Wall clock time and date at job start Tue Mar 31 2020 17:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40104 * 125.97531 * 180.12353 * 4 3 2 6 6 C 1.34777 * 120.00177 * 0.25568 * 5 4 3 7 7 O 1.21608 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.00132 * 180.02562 * 6 5 4 9 9 C 1.36610 * 125.77443 * 179.71563 * 8 6 5 10 10 N 1.34810 * 106.84039 * 179.86844 * 9 8 6 11 11 C 1.46506 * 126.59852 * 180.13610 * 10 9 8 12 12 C 1.52999 * 109.47205 * 75.31474 * 11 10 9 13 13 C 1.53001 * 109.47432 * 195.31750 * 11 10 9 14 14 C 1.53003 * 109.46917 * 315.31744 * 11 10 9 15 15 N 1.40213 * 106.81375 * 0.37826 * 10 9 8 16 16 N 1.28768 * 108.36744 * 359.75974 * 15 10 9 17 17 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46498 * 125.97410 * 359.96275 * 18 2 1 20 20 C 1.50702 * 109.47036 * 90.00121 * 19 18 2 21 21 H 1.08000 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99820 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99752 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47202 * 90.00097 * 24 22 20 26 26 H 1.48499 * 109.46838 * 209.99601 * 24 22 20 27 27 H 1.48496 * 109.47188 * 329.99716 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07995 * 126.06740 * 0.03221 * 3 2 1 32 32 H 0.96994 * 120.00097 * 180.25202 * 5 4 3 33 33 H 1.08004 * 126.57575 * 359.97438 * 9 8 6 34 34 H 1.09000 * 109.46952 * 60.00354 * 12 11 10 35 35 H 1.08998 * 109.47489 * 180.02562 * 12 11 10 36 36 H 1.09007 * 109.47029 * 300.00646 * 12 11 10 37 37 H 1.08998 * 109.46881 * 59.99944 * 13 11 10 38 38 H 1.08999 * 109.47161 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47116 * 299.99886 * 13 11 10 40 40 H 1.09007 * 109.46964 * 59.99570 * 14 11 10 41 41 H 1.08999 * 109.47426 * 179.97438 * 14 11 10 42 42 H 1.08998 * 109.46808 * 299.99815 * 14 11 10 43 43 H 1.09005 * 109.47009 * 210.00038 * 19 18 2 44 44 H 1.08998 * 109.47217 * 329.99672 * 19 18 2 45 45 H 0.96998 * 120.00018 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7732 1.4745 0.0053 6 6 4.6364 2.8153 0.0117 7 8 3.5270 3.3133 0.0143 8 6 5.8324 3.6786 0.0145 9 6 5.8312 5.0447 0.0153 10 7 7.1212 5.4363 0.0209 11 6 7.6152 6.8155 0.0266 12 6 7.4382 7.4149 1.4231 13 6 9.0983 6.8277 -0.3493 14 6 6.8251 7.6445 -0.9880 15 7 7.8992 4.2699 0.0145 16 7 7.1077 3.2542 0.0108 17 7 3.6337 -0.6577 -0.0045 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0127 20 6 1.6943 -2.9553 -1.4359 21 1 1.9099 -2.2834 -2.2535 22 6 1.2767 -4.2437 -1.6941 23 7 1.0147 -5.0620 -0.6984 24 14 1.0845 -4.8273 -3.4581 25 1 2.3655 -5.4132 -3.9280 26 1 0.0156 -5.8560 -3.5254 27 1 0.7196 -3.6768 -4.3231 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0005 32 1 5.6580 1.0773 0.0029 33 1 4.9633 5.6875 0.0138 34 1 8.0011 6.8244 2.1460 35 1 7.8053 8.4412 1.4273 36 1 6.3816 7.4063 1.6910 37 1 9.2244 6.4007 -1.3442 38 1 9.4657 7.8539 -0.3455 39 1 9.6612 6.2371 0.3735 40 1 5.7685 7.6358 -0.7202 41 1 7.1923 8.6708 -0.9835 42 1 6.9513 7.2175 -1.9829 43 1 2.5848 -3.1072 0.4976 44 1 0.8916 -2.5584 0.5013 45 1 0.7212 -5.9685 -0.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359945533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:26 Heat of formation + Delta-G solvation = 133.766388 kcal Electronic energy + Delta-G solvation = -27454.771064 eV Core-core repulsion = 23511.440768 eV Total energy + Delta-G solvation = -3943.330297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.53367 -40.63786 -39.08318 -37.78036 -34.83722 -33.36184 -32.33605 -31.59065 -31.08760 -30.54790 -28.16470 -28.09729 -26.71800 -26.30971 -24.44114 -23.86763 -22.69362 -21.19203 -20.65643 -19.66976 -19.08629 -17.60782 -16.67462 -16.39895 -16.37129 -16.17232 -15.36579 -15.11786 -14.95846 -14.81275 -14.48068 -14.37455 -14.08280 -13.85653 -13.27310 -13.09752 -12.98331 -12.88138 -12.53748 -12.45276 -12.42374 -12.29324 -12.14316 -12.01847 -11.74071 -11.63562 -11.41339 -11.37773 -11.05858 -10.81463 -10.62119 -10.42053 -10.22384 -10.00334 -9.65752 -9.54281 -9.46416 -8.61484 -7.89818 -7.42034 -6.22611 -4.30106 0.90189 1.51004 1.64576 2.72208 2.81160 3.14386 3.24400 3.30523 3.35403 3.68263 3.83707 3.85015 3.99557 4.03968 4.11439 4.32992 4.48747 4.65394 4.78526 4.80932 4.93889 4.96608 5.00025 5.10983 5.12381 5.13915 5.33869 5.39508 5.47399 5.54301 5.69546 5.76434 5.98519 6.12585 6.13092 6.26493 6.49876 6.57245 6.75699 6.96222 7.09026 7.46907 7.60450 7.70310 7.80223 7.92093 8.08777 8.24447 8.68924 8.78627 9.36137 10.84615 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024824 B = 0.002107 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.667710 B =13287.827108 C =13691.249367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.264 3.736 5 N -0.615 5.615 6 C 0.612 3.388 7 O -0.516 6.516 8 C -0.095 4.095 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.169 3.831 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.164 4.164 15 N -0.061 5.061 16 N -0.205 5.205 17 N -0.316 5.316 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.203 0.797 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 27.823 2.905 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.012 3.988 5 N -0.261 5.261 6 C 0.396 3.604 7 O -0.390 6.390 8 C -0.235 4.235 9 C -0.060 4.060 10 N -0.138 5.138 11 C 0.087 3.913 12 C -0.220 4.220 13 C -0.207 4.207 14 C -0.222 4.222 15 N -0.041 5.041 16 N -0.078 5.078 17 N -0.147 5.147 18 N -0.098 5.098 19 C 0.140 3.860 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.255 0.745 33 H 0.220 0.780 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.986 26.283 2.950 29.038 hybrid contribution -0.960 0.474 -0.935 1.422 sum 11.026 26.757 2.015 29.010 Atomic orbital electron populations 1.20376 0.87894 1.03868 1.02519 1.21063 0.94919 0.87133 1.00926 1.21240 0.89629 0.99812 1.21336 1.18918 0.86963 0.89600 1.03356 1.42144 1.08187 1.04574 1.71218 1.16581 0.86505 0.80789 0.76575 1.90751 1.24678 1.74103 1.49453 1.21252 0.92312 0.92151 1.17772 1.23213 0.89267 0.95851 0.97643 1.50842 1.04954 1.08825 1.49162 1.21114 0.96910 0.75294 0.97982 1.22295 1.03591 1.02029 0.94053 1.22001 0.91684 1.03475 1.03534 1.22315 1.00689 1.00517 0.98681 1.81971 1.15197 0.84627 1.22266 1.74691 1.00654 1.22540 1.09963 1.77295 0.99865 1.08455 1.29053 1.49021 1.00951 1.07818 1.52036 1.19699 0.95999 0.71334 0.98934 1.21331 1.46709 0.97980 0.91382 0.91716 1.24931 0.94708 0.96055 0.98127 1.69922 1.45000 1.06920 1.31118 0.86353 0.78001 0.78542 0.83784 1.20334 1.20911 1.19661 0.91085 0.89904 0.90619 0.82263 0.74533 0.78005 0.91155 0.89596 0.91265 0.91160 0.90101 0.90566 0.91016 0.89349 0.91041 0.92946 0.92747 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.03 9.52 -39.83 -0.38 -6.41 16 4 C 0.26 5.62 8.11 -154.43 -1.25 4.37 16 5 N -0.61 -10.79 5.44 -12.08 -0.07 -10.85 16 6 C 0.61 9.75 7.78 -12.49 -0.10 9.65 16 7 O -0.52 -9.01 13.99 5.27 0.07 -8.94 16 8 C -0.10 -1.24 6.99 -83.55 -0.58 -1.83 16 9 C 0.10 0.93 10.43 -16.83 -0.18 0.75 16 10 N -0.35 -3.07 3.44 -48.35 -0.17 -3.23 16 11 C 0.17 0.85 1.25 -131.81 -0.16 0.68 16 12 C -0.16 -0.60 8.74 37.16 0.32 -0.27 16 13 C -0.15 -0.68 8.11 37.16 0.30 -0.38 16 14 C -0.16 -0.53 8.30 37.16 0.31 -0.23 16 15 N -0.06 -0.73 12.91 60.35 0.78 0.05 16 16 N -0.20 -2.80 12.04 32.84 0.40 -2.40 16 17 N -0.32 -7.58 12.59 31.43 0.40 -7.19 16 18 N -0.32 -7.64 3.59 -58.33 -0.21 -7.85 16 19 C 0.26 6.71 5.81 -5.19 -0.03 6.68 16 20 C -0.54 -14.92 9.39 -34.44 -0.32 -15.24 16 21 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 24 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 32 H 0.42 6.69 8.51 -40.82 -0.35 6.34 16 33 H 0.20 1.32 7.62 -52.48 -0.40 0.92 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 40 H 0.07 0.20 7.43 -51.93 -0.39 -0.18 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -33.80 385.28 -6.09 -39.89 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.43 Total: 3.22 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.38 Total: -0.31 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 1.86 Total: -56.01 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.80 -6.09 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359945533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.656 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds