Wall clock time and date at job start Tue Mar 31 2020 17:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40104 * 125.97531 * 180.12353 * 4 3 2 6 6 C 1.34777 * 120.00177 * 0.25568 * 5 4 3 7 7 O 1.21608 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.00132 * 180.02562 * 6 5 4 9 9 C 1.36610 * 125.77443 * 179.71563 * 8 6 5 10 10 N 1.34810 * 106.84039 * 179.86844 * 9 8 6 11 11 C 1.46506 * 126.59852 * 180.13610 * 10 9 8 12 12 C 1.52999 * 109.47205 * 75.31474 * 11 10 9 13 13 C 1.53001 * 109.47432 * 195.31750 * 11 10 9 14 14 C 1.53003 * 109.46917 * 315.31744 * 11 10 9 15 15 N 1.40213 * 106.81375 * 0.37826 * 10 9 8 16 16 N 1.28768 * 108.36744 * 359.75974 * 15 10 9 17 17 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46498 * 125.97410 * 359.96275 * 18 2 1 20 20 C 1.50702 * 109.47036 * 90.00121 * 19 18 2 21 21 H 1.08000 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99820 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99752 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47202 * 90.00097 * 24 22 20 26 26 H 1.48499 * 109.46838 * 209.99601 * 24 22 20 27 27 H 1.48496 * 109.47188 * 329.99716 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07995 * 126.06740 * 0.03221 * 3 2 1 32 32 H 0.96994 * 120.00097 * 180.25202 * 5 4 3 33 33 H 1.08004 * 126.57575 * 359.97438 * 9 8 6 34 34 H 1.09000 * 109.46952 * 60.00354 * 12 11 10 35 35 H 1.08998 * 109.47489 * 180.02562 * 12 11 10 36 36 H 1.09007 * 109.47029 * 300.00646 * 12 11 10 37 37 H 1.08998 * 109.46881 * 59.99944 * 13 11 10 38 38 H 1.08999 * 109.47161 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47116 * 299.99886 * 13 11 10 40 40 H 1.09007 * 109.46964 * 59.99570 * 14 11 10 41 41 H 1.08999 * 109.47426 * 179.97438 * 14 11 10 42 42 H 1.08998 * 109.46808 * 299.99815 * 14 11 10 43 43 H 1.09005 * 109.47009 * 210.00038 * 19 18 2 44 44 H 1.08998 * 109.47217 * 329.99672 * 19 18 2 45 45 H 0.96998 * 120.00018 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7732 1.4745 0.0053 6 6 4.6364 2.8153 0.0117 7 8 3.5270 3.3133 0.0143 8 6 5.8324 3.6786 0.0145 9 6 5.8312 5.0447 0.0153 10 7 7.1212 5.4363 0.0209 11 6 7.6152 6.8155 0.0266 12 6 7.4382 7.4149 1.4231 13 6 9.0983 6.8277 -0.3493 14 6 6.8251 7.6445 -0.9880 15 7 7.8992 4.2699 0.0145 16 7 7.1077 3.2542 0.0108 17 7 3.6337 -0.6577 -0.0045 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0127 20 6 1.6943 -2.9553 -1.4359 21 1 1.9099 -2.2834 -2.2535 22 6 1.2767 -4.2437 -1.6941 23 7 1.0147 -5.0620 -0.6984 24 14 1.0845 -4.8273 -3.4581 25 1 2.3655 -5.4132 -3.9280 26 1 0.0156 -5.8560 -3.5254 27 1 0.7196 -3.6768 -4.3231 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0005 32 1 5.6580 1.0773 0.0029 33 1 4.9633 5.6875 0.0138 34 1 8.0011 6.8244 2.1460 35 1 7.8053 8.4412 1.4273 36 1 6.3816 7.4063 1.6910 37 1 9.2244 6.4007 -1.3442 38 1 9.4657 7.8539 -0.3455 39 1 9.6612 6.2371 0.3735 40 1 5.7685 7.6358 -0.7202 41 1 7.1923 8.6708 -0.9835 42 1 6.9513 7.2175 -1.9829 43 1 2.5848 -3.1072 0.4976 44 1 0.8916 -2.5584 0.5013 45 1 0.7212 -5.9685 -0.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359945533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:21 Heat of formation + Delta-G solvation = 111.408615 kcal Electronic energy + Delta-G solvation = -27455.740570 eV Core-core repulsion = 23511.440768 eV Total energy + Delta-G solvation = -3944.299802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.98 seconds Orbital eigenvalues (eV) -43.39869 -42.27286 -40.43636 -38.31341 -36.39066 -35.31592 -33.25632 -32.97038 -32.67159 -31.80974 -28.73284 -28.39758 -28.37734 -27.86282 -25.73224 -24.77093 -24.40574 -22.33722 -21.63549 -21.22060 -20.38883 -18.80864 -18.46008 -17.70837 -17.32765 -17.23797 -17.10126 -16.42433 -16.16725 -15.77597 -15.62622 -15.54142 -15.04647 -14.89967 -14.69497 -14.31946 -13.79781 -13.66377 -13.62074 -13.59473 -13.37074 -13.31514 -13.18453 -13.14127 -12.81967 -12.75609 -12.69016 -12.45431 -12.37824 -12.24896 -12.11201 -11.96599 -11.57724 -11.36679 -11.30604 -11.16003 -10.73394 -10.43591 -9.59326 -9.14983 -8.32465 -6.49914 0.07802 0.41674 0.95555 1.10798 1.35308 1.37955 1.39753 1.51166 1.75893 2.25324 2.36302 2.38958 2.97201 3.03060 3.21746 3.61063 3.66398 3.78176 3.85011 3.89942 4.15630 4.16464 4.44280 4.50122 4.59700 4.61858 4.69449 4.72639 4.77203 4.80717 4.81216 4.82429 4.87227 4.99265 4.99820 5.10205 5.13800 5.21817 5.26176 5.27853 5.52707 5.54193 5.81407 5.90103 6.15622 6.27158 6.62439 6.77530 6.95568 7.02879 7.20851 8.73626 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024824 B = 0.002107 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.667710 B =13287.827108 C =13691.249367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 C -0.294 4.294 4 C 0.272 3.728 5 N -0.617 5.617 6 C 0.617 3.383 7 O -0.531 6.531 8 C -0.120 4.120 9 C 0.120 3.880 10 N -0.337 5.337 11 C 0.159 3.841 12 C -0.159 4.159 13 C -0.149 4.149 14 C -0.162 4.162 15 N -0.078 5.078 16 N -0.230 5.230 17 N -0.360 5.360 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.269 1.269 27 H -0.269 1.269 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.423 0.577 33 H 0.237 0.763 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.023 0.977 44 H 0.055 0.945 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.298 30.936 2.235 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.041 4.041 3 C -0.325 4.325 4 C 0.018 3.982 5 N -0.264 5.264 6 C 0.403 3.597 7 O -0.405 6.405 8 C -0.260 4.260 9 C -0.039 4.039 10 N -0.123 5.123 11 C 0.078 3.922 12 C -0.217 4.217 13 C -0.206 4.206 14 C -0.220 4.220 15 N -0.058 5.058 16 N -0.103 5.103 17 N -0.190 5.190 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.202 1.202 26 H -0.194 1.194 27 H -0.193 1.193 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.192 0.808 32 H 0.260 0.740 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.615 29.440 2.291 31.731 hybrid contribution -0.732 -0.278 -0.675 1.034 sum 10.883 29.162 1.616 31.168 Atomic orbital electron populations 1.20519 0.85027 1.04528 1.04225 1.21809 0.96801 0.86282 0.99256 1.21458 0.89321 1.00231 1.21459 1.19245 0.88461 0.89232 1.01241 1.42304 1.07419 1.05017 1.71699 1.16924 0.87334 0.80150 0.75283 1.90714 1.25574 1.74155 1.50071 1.20993 0.91255 0.93038 1.20702 1.23652 0.90383 0.94802 0.95038 1.51239 1.04479 1.09520 1.47030 1.21639 0.97399 0.73433 0.99709 1.22324 1.03817 1.03160 0.92366 1.22037 0.91401 1.04997 1.02205 1.22366 1.01039 1.01361 0.97211 1.81902 1.15648 0.85441 1.22801 1.74671 1.01067 1.23731 1.10868 1.77211 1.00302 1.10058 1.31479 1.48821 1.01602 1.07663 1.54266 1.19266 0.94953 0.72377 0.97816 1.21435 1.47504 0.98408 0.91747 0.93263 1.25738 0.93977 0.95885 1.02283 1.70002 1.45105 1.07364 1.33084 0.85354 0.78220 0.78230 0.78682 1.20179 1.19381 1.19347 0.88745 0.91456 0.87624 0.80848 0.73982 0.74689 0.92703 0.86777 0.90821 0.92460 0.87089 0.92078 0.90114 0.86663 0.92149 0.95885 0.92721 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.81 9.89 71.24 0.70 -2.11 16 2 C 0.09 3.80 6.92 41.38 0.29 4.09 16 3 C -0.29 -12.19 9.52 22.11 0.21 -11.98 16 4 C 0.27 11.79 8.11 133.35 1.08 12.87 16 5 N -0.62 -22.04 5.44 -310.40 -1.69 -23.73 16 6 C 0.62 19.47 7.78 86.68 0.67 20.15 16 7 O -0.53 -17.94 13.99 -4.06 -0.06 -17.99 16 8 C -0.12 -3.06 6.99 40.81 0.29 -2.78 16 9 C 0.12 2.05 10.43 83.85 0.87 2.92 16 10 N -0.34 -5.33 3.44 -306.87 -1.06 -6.39 16 11 C 0.16 1.18 1.25 3.60 0.00 1.18 16 12 C -0.16 -0.69 8.74 71.98 0.63 -0.06 16 13 C -0.15 -1.08 8.11 71.98 0.58 -0.50 16 14 C -0.16 -0.50 8.30 71.98 0.60 0.10 16 15 N -0.08 -1.84 12.91 37.02 0.48 -1.36 16 16 N -0.23 -6.32 12.04 -50.00 -0.60 -6.92 16 17 N -0.36 -17.91 12.59 -54.47 -0.69 -18.60 16 18 N -0.34 -17.03 3.59 -338.44 -1.22 -18.24 16 19 C 0.27 14.87 5.81 85.63 0.50 15.36 16 20 C -0.55 -31.61 9.39 25.60 0.24 -31.37 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.02 1.23 5.46 84.65 0.46 1.70 16 23 N -0.92 -52.54 13.29 21.45 0.28 -52.25 16 24 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.45 7.71 -2.39 -0.02 2.43 16 30 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 32 H 0.42 14.08 8.51 -92.71 -0.79 13.29 16 33 H 0.24 2.26 7.62 -2.91 -0.02 2.24 16 34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 40 H 0.08 0.14 7.43 -2.38 -0.02 0.12 16 41 H 0.11 -0.22 8.14 -2.39 -0.02 -0.23 16 42 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.02 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.06 2.90 7.65 -2.39 -0.02 2.88 16 45 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.44 385.28 4.85 -70.60 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.23 Total: 19.44 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 7.13 Total: 9.58 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -4.49 Total: -127.50 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -75.44 4.85 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359945533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.005 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.98 seconds