Wall clock time and date at job start Tue Mar 31 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34879 * 125.50993 * 2 1 4 4 C 1.41329 * 108.24508 * 179.97438 * 3 2 1 5 5 N 1.32719 * 126.39035 * 180.02562 * 4 3 2 6 6 C 1.34424 * 119.99858 * 0.02562 * 5 4 3 7 7 O 1.22085 * 120.00481 * 0.02562 * 6 5 4 8 8 N 1.34427 * 119.99655 * 180.02562 * 6 5 4 9 9 C 1.32714 * 119.99945 * 180.02562 * 8 6 5 10 10 N 1.37551 * 126.39175 * 359.68682 * 9 8 6 11 11 H 0.97001 * 126.38042 * 359.97438 * 10 9 8 12 12 N 1.40168 * 107.24674 * 179.88319 * 10 9 8 13 13 H 0.96993 * 125.84985 * 180.14840 * 12 10 9 14 14 C 1.36527 * 108.30513 * 0.38392 * 12 10 9 15 15 C 1.34884 * 108.98474 * 359.76387 * 14 12 10 16 16 C 1.50708 * 125.87758 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47106 * 299.97719 * 16 15 14 18 18 C 1.52999 * 109.46824 * 59.97461 * 16 15 14 19 19 N 1.37549 * 107.21678 * 0.25826 * 4 3 2 20 20 H 0.97002 * 126.38345 * 179.74427 * 19 4 3 21 21 N 1.36522 * 125.50435 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.84537 * 0.02562 * 21 2 1 23 23 C 1.50700 * 109.47150 * 85.00458 * 22 21 2 24 24 H 1.08001 * 120.00097 * 359.97438 * 23 22 21 25 25 C 1.37876 * 119.99841 * 180.02562 * 23 22 21 26 26 N 1.31520 * 120.00291 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00062 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46900 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47388 * 119.99521 * 27 25 23 30 30 H 1.48497 * 109.47075 * 239.99849 * 27 25 23 31 31 H 1.08995 * 109.46964 * 90.01769 * 1 2 3 32 32 H 1.08992 * 109.47301 * 210.02524 * 1 2 3 33 33 H 1.09004 * 109.46209 * 330.02033 * 1 2 3 34 34 H 1.08001 * 125.87699 * 0.02562 * 3 2 1 35 35 H 1.08000 * 125.50785 * 179.75744 * 14 12 10 36 36 H 1.08997 * 109.46857 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.47022 * 180.02562 * 17 16 15 38 38 H 1.09003 * 109.46886 * 299.99836 * 17 16 15 39 39 H 1.08998 * 109.47288 * 59.99590 * 17 16 15 40 40 H 1.09008 * 109.47018 * 60.00097 * 18 16 15 41 41 H 1.09003 * 109.46861 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47522 * 300.00374 * 18 16 15 43 43 H 1.09008 * 109.46980 * 204.99905 * 22 21 2 44 44 H 1.08995 * 109.47405 * 324.99774 * 22 21 2 45 45 H 0.96997 * 119.99856 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2905 1.0979 0.0000 4 6 3.6401 0.6785 0.0006 5 7 4.7091 1.4650 0.0013 6 6 4.5605 2.8010 0.0019 7 8 3.4423 3.2910 0.0024 8 7 5.6433 3.5977 0.0021 9 6 5.4967 4.9167 0.0033 10 7 4.3061 5.6055 -0.0016 11 1 3.4170 5.2176 -0.0070 12 7 4.6166 6.9723 0.0046 13 1 3.9758 7.7004 0.0051 14 6 5.9756 7.1033 0.0044 15 6 6.5347 5.8758 0.0036 16 6 8.0121 5.5782 0.0038 17 6 8.6547 6.1850 -1.2451 18 6 8.6542 6.1841 1.2533 19 7 3.6390 -0.6970 -0.0050 20 1 4.4194 -1.2730 -0.0095 21 7 2.2999 -1.1114 0.0005 22 6 1.8315 -2.4995 0.0006 23 6 1.5541 -2.9361 -1.4149 24 1 1.7107 -2.2483 -2.2327 25 6 1.0994 -4.2134 -1.6657 26 7 0.9082 -5.0508 -0.6697 27 14 0.7563 -4.7549 -3.4202 28 1 1.0494 -3.6349 -4.3502 29 1 1.6174 -5.9168 -3.7570 30 1 -0.6713 -5.1432 -3.5482 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3632 0.8902 0.5136 34 1 1.9458 2.1215 0.0004 35 1 6.5156 8.0385 0.0048 36 1 8.1653 4.4990 0.0034 37 1 9.7231 5.9694 -1.2453 38 1 8.1972 5.7533 -2.1354 39 1 8.5014 7.2641 -1.2448 40 1 8.1964 5.7518 2.1431 41 1 9.7229 5.9693 1.2532 42 1 8.5009 7.2632 1.2538 43 1 2.5977 -3.1415 0.4353 44 1 0.9175 -2.5745 0.5897 45 1 0.5887 -5.9495 -0.8463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455116754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:25 Heat of formation + Delta-G solvation = 160.355767 kcal Electronic energy + Delta-G solvation = -27607.473499 eV Core-core repulsion = 23665.296204 eV Total energy + Delta-G solvation = -3942.177295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31760 -40.67935 -38.36309 -35.67667 -34.53313 -33.50126 -32.92723 -32.04696 -30.74613 -30.24905 -29.09219 -27.40454 -27.09616 -26.57565 -23.74911 -23.00543 -22.33757 -21.37678 -19.84666 -19.46672 -18.81439 -18.01608 -17.03694 -16.67972 -15.82850 -15.65433 -15.23112 -15.19640 -14.84650 -14.70922 -14.40581 -14.10000 -13.95196 -13.65294 -13.09083 -13.03620 -12.88156 -12.72574 -12.57551 -12.41182 -12.23334 -12.00181 -11.75710 -11.29084 -11.20654 -11.16075 -11.03337 -10.69812 -10.65599 -10.54608 -10.42732 -10.21564 -9.36673 -9.33520 -8.87240 -8.72071 -8.52627 -8.15258 -7.42449 -6.66475 -6.36988 -4.58844 1.25776 1.91291 1.92261 2.22877 2.74190 3.07749 3.17163 3.22710 3.54707 3.98792 4.10462 4.27099 4.53940 4.86644 4.97579 5.02658 5.13440 5.15638 5.16159 5.30810 5.43310 5.59978 5.61944 5.66178 5.82278 5.83260 5.90378 5.96262 6.00688 6.16942 6.18287 6.32305 6.33629 6.44544 6.54975 6.64476 6.69831 6.81187 6.91161 7.10395 7.45144 7.51931 7.58914 7.80008 7.87886 8.21563 8.28338 8.51732 8.80524 9.11180 9.91490 10.58508 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002213 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.046643 B =12648.022875 C =13088.835695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.184 3.816 3 C -0.335 4.335 4 C 0.476 3.524 5 N -0.668 5.668 6 C 0.655 3.345 7 O -0.674 6.674 8 N -0.605 5.605 9 C 0.478 3.522 10 N -0.501 5.501 11 H 0.453 0.547 12 N -0.506 5.506 13 H 0.440 0.560 14 C 0.140 3.860 15 C -0.221 4.221 16 C -0.014 4.014 17 C -0.141 4.141 18 C -0.141 4.141 19 N -0.473 5.473 20 H 0.444 0.556 21 N -0.346 5.346 22 C 0.255 3.745 23 C -0.552 4.552 24 H 0.069 0.931 25 C 0.069 3.931 26 N -0.888 5.888 27 Si 0.908 3.092 28 H -0.270 1.270 29 H -0.279 1.279 30 H -0.279 1.279 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.189 0.811 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 22.926 2.732 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 C -0.368 4.368 4 C 0.223 3.777 5 N -0.428 5.428 6 C 0.355 3.645 7 O -0.561 6.561 8 N -0.362 5.362 9 C 0.220 3.780 10 N -0.246 5.246 11 H 0.311 0.689 12 N -0.224 5.224 13 H 0.284 0.716 14 C 0.002 3.998 15 C -0.235 4.235 16 C -0.033 4.033 17 C -0.198 4.198 18 C -0.198 4.198 19 N -0.196 5.196 20 H 0.291 0.709 21 N -0.133 5.133 22 C 0.139 3.861 23 C -0.590 4.590 24 H 0.087 0.913 25 C -0.136 4.136 26 N -0.525 5.525 27 Si 0.734 3.266 28 H -0.194 1.194 29 H -0.205 1.205 30 H -0.205 1.205 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.197 0.803 35 H 0.205 0.795 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.866 21.761 2.790 22.988 hybrid contribution -1.853 -0.118 -0.962 2.091 sum 5.013 21.643 1.828 22.291 Atomic orbital electron populations 1.20556 0.86695 1.03620 1.04053 1.21238 0.94269 0.85751 0.92892 1.22214 0.91306 0.99992 1.23287 1.18980 0.91247 0.82365 0.85121 1.68395 1.27300 1.03671 1.43481 1.18177 0.83126 0.87066 0.76092 1.90386 1.29856 1.77856 1.57963 1.69535 1.30480 0.96325 1.39814 1.20525 0.83014 0.89357 0.85132 1.47392 1.11628 0.92858 1.72689 0.68861 1.44094 1.06366 0.98660 1.73239 0.71568 1.22196 0.81708 0.99812 0.96111 1.19113 0.95576 0.89621 1.19187 1.19361 0.87255 1.02310 0.94401 1.21858 1.00181 0.99905 0.97894 1.21859 1.00173 0.99911 0.97874 1.44405 0.98679 1.04942 1.71585 0.70870 1.47793 0.92706 1.07918 1.64902 1.19969 0.96340 0.70464 0.99346 1.21442 1.47106 0.98688 0.91793 0.91298 1.24950 0.94389 0.95840 0.98373 1.69912 1.44332 1.06886 1.31325 0.86267 0.78204 0.78856 0.83245 1.19426 1.20519 1.20460 0.89374 0.90214 0.89863 0.80345 0.79461 0.88679 0.92653 0.92597 0.93332 0.92608 0.92659 0.93337 0.93195 0.91662 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.09 36.01 0.36 -1.01 16 2 C 0.18 3.54 6.92 -81.69 -0.57 2.98 16 3 C -0.34 -7.00 9.41 -39.60 -0.37 -7.38 16 4 C 0.48 10.62 8.08 -155.31 -1.25 9.37 16 5 N -0.67 -15.86 10.62 -15.66 -0.17 -16.03 16 6 C 0.66 15.14 8.42 -87.55 -0.74 14.40 16 7 O -0.67 -15.07 10.65 4.84 0.05 -15.02 16 8 N -0.61 -12.52 10.39 -15.67 -0.16 -12.68 16 9 C 0.48 7.75 7.70 -155.31 -1.20 6.55 16 10 N -0.50 -6.78 7.05 31.34 0.22 -6.56 16 11 H 0.45 6.79 6.35 -182.54 -1.16 5.63 16 12 N -0.51 -3.96 7.41 30.66 0.23 -3.73 16 13 H 0.44 1.66 8.96 -182.55 -1.64 0.02 16 14 C 0.14 1.01 11.21 -16.65 -0.19 0.83 16 15 C -0.22 -2.53 4.87 -104.64 -0.51 -3.04 16 16 C -0.01 -0.14 3.28 -91.77 -0.30 -0.44 16 17 C -0.14 -1.15 9.07 37.16 0.34 -0.81 16 18 C -0.14 -1.13 9.07 37.16 0.34 -0.79 16 19 N -0.47 -9.67 7.39 31.34 0.23 -9.44 16 20 H 0.44 8.14 8.96 -182.54 -1.64 6.50 16 21 N -0.35 -7.15 3.64 -58.04 -0.21 -7.36 16 22 C 0.26 5.68 5.93 -5.19 -0.03 5.65 16 23 C -0.55 -13.68 9.39 -34.44 -0.32 -14.00 16 24 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 25 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 26 N -0.89 -23.11 13.29 55.43 0.74 -22.38 16 27 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.18 7.14 -51.93 -0.37 0.81 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.18 3.78 5.76 -52.49 -0.30 3.48 16 35 H 0.19 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.29 7.99 -51.93 -0.42 -0.12 16 40 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.29 7.99 -51.93 -0.42 -0.13 16 43 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 44 H 0.07 1.45 7.18 -51.93 -0.37 1.08 16 45 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -34.78 379.62 -12.56 -47.34 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -9.65 Total: 11.38 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -4.54 Total: 13.95 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: 0.88 Total: -78.17 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.05 Total: -15.02 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.78 -12.56 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455116754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.694 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds