Wall clock time and date at job start Tue Mar 31 2020 17:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34879 * 125.50993 * 2 1 4 4 C 1.41329 * 108.24508 * 179.97438 * 3 2 1 5 5 N 1.32719 * 126.39035 * 180.02562 * 4 3 2 6 6 C 1.34424 * 119.99858 * 0.02562 * 5 4 3 7 7 O 1.22085 * 120.00481 * 0.02562 * 6 5 4 8 8 N 1.34427 * 119.99655 * 180.02562 * 6 5 4 9 9 C 1.32714 * 119.99945 * 180.02562 * 8 6 5 10 10 N 1.37551 * 126.39175 * 359.68682 * 9 8 6 11 11 H 0.97001 * 126.38042 * 359.97438 * 10 9 8 12 12 N 1.40168 * 107.24674 * 179.88319 * 10 9 8 13 13 H 0.96993 * 125.84985 * 180.14840 * 12 10 9 14 14 C 1.36527 * 108.30513 * 0.38392 * 12 10 9 15 15 C 1.34884 * 108.98474 * 359.76387 * 14 12 10 16 16 C 1.50708 * 125.87758 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47106 * 299.97719 * 16 15 14 18 18 C 1.52999 * 109.46824 * 59.97461 * 16 15 14 19 19 N 1.37549 * 107.21678 * 0.25826 * 4 3 2 20 20 H 0.97002 * 126.38345 * 179.74427 * 19 4 3 21 21 N 1.36522 * 125.50435 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.84537 * 0.02562 * 21 2 1 23 23 C 1.50700 * 109.47150 * 85.00458 * 22 21 2 24 24 H 1.08001 * 120.00097 * 359.97438 * 23 22 21 25 25 C 1.37876 * 119.99841 * 180.02562 * 23 22 21 26 26 N 1.31520 * 120.00291 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00062 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46900 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47388 * 119.99521 * 27 25 23 30 30 H 1.48497 * 109.47075 * 239.99849 * 27 25 23 31 31 H 1.08995 * 109.46964 * 90.01769 * 1 2 3 32 32 H 1.08992 * 109.47301 * 210.02524 * 1 2 3 33 33 H 1.09004 * 109.46209 * 330.02033 * 1 2 3 34 34 H 1.08001 * 125.87699 * 0.02562 * 3 2 1 35 35 H 1.08000 * 125.50785 * 179.75744 * 14 12 10 36 36 H 1.08997 * 109.46857 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.47022 * 180.02562 * 17 16 15 38 38 H 1.09003 * 109.46886 * 299.99836 * 17 16 15 39 39 H 1.08998 * 109.47288 * 59.99590 * 17 16 15 40 40 H 1.09008 * 109.47018 * 60.00097 * 18 16 15 41 41 H 1.09003 * 109.46861 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47522 * 300.00374 * 18 16 15 43 43 H 1.09008 * 109.46980 * 204.99905 * 22 21 2 44 44 H 1.08995 * 109.47405 * 324.99774 * 22 21 2 45 45 H 0.96997 * 119.99856 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2905 1.0979 0.0000 4 6 3.6401 0.6785 0.0006 5 7 4.7091 1.4650 0.0013 6 6 4.5605 2.8010 0.0019 7 8 3.4423 3.2910 0.0024 8 7 5.6433 3.5977 0.0021 9 6 5.4967 4.9167 0.0033 10 7 4.3061 5.6055 -0.0016 11 1 3.4170 5.2176 -0.0070 12 7 4.6166 6.9723 0.0046 13 1 3.9758 7.7004 0.0051 14 6 5.9756 7.1033 0.0044 15 6 6.5347 5.8758 0.0036 16 6 8.0121 5.5782 0.0038 17 6 8.6547 6.1850 -1.2451 18 6 8.6542 6.1841 1.2533 19 7 3.6390 -0.6970 -0.0050 20 1 4.4194 -1.2730 -0.0095 21 7 2.2999 -1.1114 0.0005 22 6 1.8315 -2.4995 0.0006 23 6 1.5541 -2.9361 -1.4149 24 1 1.7107 -2.2483 -2.2327 25 6 1.0994 -4.2134 -1.6657 26 7 0.9082 -5.0508 -0.6697 27 14 0.7563 -4.7549 -3.4202 28 1 1.0494 -3.6349 -4.3502 29 1 1.6174 -5.9168 -3.7570 30 1 -0.6713 -5.1432 -3.5482 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3632 0.8902 0.5136 34 1 1.9458 2.1215 0.0004 35 1 6.5156 8.0385 0.0048 36 1 8.1653 4.4990 0.0034 37 1 9.7231 5.9694 -1.2453 38 1 8.1972 5.7533 -2.1354 39 1 8.5014 7.2641 -1.2448 40 1 8.1964 5.7518 2.1431 41 1 9.7229 5.9693 1.2532 42 1 8.5009 7.2632 1.2538 43 1 2.5977 -3.1415 0.4353 44 1 0.9175 -2.5745 0.5897 45 1 0.5887 -5.9495 -0.8463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455116754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:23 Heat of formation + Delta-G solvation = 134.690264 kcal Electronic energy + Delta-G solvation = -27608.586438 eV Core-core repulsion = 23665.296204 eV Total energy + Delta-G solvation = -3943.290234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.40173 -42.21747 -39.86768 -36.44653 -36.17873 -35.07197 -34.46526 -33.60124 -32.35420 -31.34587 -30.17738 -28.80108 -28.34955 -27.70869 -25.25291 -24.28724 -23.49266 -22.59704 -21.19196 -20.97116 -19.79459 -19.19206 -18.86184 -18.32972 -17.24559 -17.14211 -16.62895 -16.51740 -16.25025 -16.10737 -15.61600 -15.13326 -15.12010 -14.79100 -14.44725 -14.34057 -14.28607 -13.84102 -13.79757 -13.69386 -13.64906 -13.22621 -13.02786 -12.76949 -12.74852 -12.35143 -12.09019 -11.99073 -11.90526 -11.87340 -11.74150 -11.35792 -11.08844 -10.78946 -10.32243 -10.29652 -10.03534 -9.77783 -8.75154 -8.42036 -8.00799 -6.56715 0.02886 0.57161 0.67737 1.01773 1.35217 1.39813 1.47561 1.50884 2.09910 2.29503 2.75493 2.93434 3.09379 3.46962 3.58292 3.69720 4.02354 4.26986 4.31309 4.35127 4.47574 4.61078 4.63798 4.66707 4.69276 4.82392 4.86205 4.93619 5.03657 5.05923 5.06267 5.23971 5.27778 5.30176 5.35044 5.49772 5.51910 5.54029 5.68861 5.69918 5.79632 6.01084 6.16004 6.26236 6.46530 6.55901 6.73616 6.99800 7.16575 7.28900 8.37018 8.66227 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.002213 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.046643 B =12648.022875 C =13088.835695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.193 3.807 3 C -0.348 4.348 4 C 0.460 3.540 5 N -0.698 5.698 6 C 0.639 3.361 7 O -0.689 6.689 8 N -0.656 5.656 9 C 0.453 3.547 10 N -0.511 5.511 11 H 0.446 0.554 12 N -0.472 5.472 13 H 0.464 0.536 14 C 0.192 3.808 15 C -0.257 4.257 16 C -0.012 4.012 17 C -0.135 4.135 18 C -0.134 4.134 19 N -0.474 5.474 20 H 0.449 0.551 21 N -0.352 5.352 22 C 0.268 3.732 23 C -0.561 4.561 24 H 0.054 0.946 25 C 0.031 3.969 26 N -0.912 5.912 27 Si 0.965 3.035 28 H -0.275 1.275 29 H -0.278 1.278 30 H -0.269 1.269 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.257 0.743 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 26.725 2.340 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 C -0.380 4.380 4 C 0.206 3.794 5 N -0.460 5.460 6 C 0.338 3.662 7 O -0.577 6.577 8 N -0.417 5.417 9 C 0.198 3.802 10 N -0.250 5.250 11 H 0.303 0.697 12 N -0.191 5.191 13 H 0.314 0.686 14 C 0.050 3.950 15 C -0.271 4.271 16 C -0.032 4.032 17 C -0.192 4.192 18 C -0.191 4.191 19 N -0.199 5.199 20 H 0.297 0.703 21 N -0.139 5.139 22 C 0.151 3.849 23 C -0.599 4.599 24 H 0.073 0.927 25 C -0.172 4.172 26 N -0.550 5.550 27 Si 0.790 3.210 28 H -0.200 1.200 29 H -0.204 1.204 30 H -0.194 1.194 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.192 0.808 35 H 0.272 0.728 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.552 25.661 2.405 26.593 hybrid contribution -1.731 -0.969 -0.818 2.146 sum 4.821 24.692 1.586 25.208 Atomic orbital electron populations 1.20750 0.83505 1.05330 1.05066 1.21855 0.95989 0.84544 0.90800 1.22129 0.91039 1.00230 1.24643 1.19210 0.91846 0.82815 0.85540 1.68374 1.28330 1.04706 1.44544 1.18510 0.83977 0.87150 0.76546 1.90327 1.30067 1.77985 1.59275 1.69500 1.29811 0.98598 1.43826 1.21068 0.85041 0.89104 0.84971 1.47329 1.10834 0.95714 1.71123 0.69722 1.44378 1.07729 0.96669 1.70312 0.68631 1.23190 0.80715 1.00517 0.90535 1.19331 0.95434 0.90022 1.22316 1.19289 0.87247 0.99992 0.96633 1.21814 1.00047 1.01692 0.95635 1.21812 1.00037 1.01691 0.95605 1.44396 0.98956 1.04607 1.71901 0.70305 1.47738 0.92937 1.07867 1.65404 1.19687 0.96042 0.70970 0.98163 1.21546 1.47166 0.98726 0.92443 0.92733 1.25602 0.94177 0.95838 1.01537 1.69973 1.44941 1.07272 1.32836 0.85391 0.78409 0.78057 0.79159 1.19997 1.20363 1.19415 0.88464 0.89769 0.86842 0.80806 0.72767 0.93375 0.92093 0.94792 0.89790 0.94684 0.92101 0.89806 0.94302 0.91217 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.57 10.09 71.24 0.72 -1.85 16 2 C 0.19 7.53 6.92 41.06 0.28 7.82 16 3 C -0.35 -15.09 9.41 22.26 0.21 -14.89 16 4 C 0.46 21.70 8.08 134.00 1.08 22.78 16 5 N -0.70 -35.61 10.62 -321.73 -3.42 -39.02 16 6 C 0.64 31.58 8.42 179.27 1.51 33.09 16 7 O -0.69 -32.58 10.65 -5.59 -0.06 -32.64 16 8 N -0.66 -29.19 10.39 -321.73 -3.34 -32.53 16 9 C 0.45 15.01 7.70 134.00 1.03 16.05 16 10 N -0.51 -13.48 7.05 -54.75 -0.39 -13.87 16 11 H 0.45 13.56 6.35 -213.28 -1.36 12.20 16 12 N -0.47 -5.48 7.41 -56.90 -0.42 -5.90 16 13 H 0.46 1.12 8.96 -213.29 -1.91 -0.79 16 14 C 0.19 1.79 11.21 83.19 0.93 2.72 16 15 C -0.26 -5.48 4.87 -19.87 -0.10 -5.58 16 16 C -0.01 -0.23 3.28 -11.54 -0.04 -0.27 16 17 C -0.13 -1.90 9.07 71.98 0.65 -1.25 16 18 C -0.13 -1.86 9.07 71.98 0.65 -1.21 16 19 N -0.47 -20.43 7.39 -54.75 -0.40 -20.84 16 20 H 0.45 17.60 8.96 -213.27 -1.91 15.68 16 21 N -0.35 -14.94 3.64 -337.53 -1.23 -16.16 16 22 C 0.27 12.15 5.93 85.63 0.51 12.65 16 23 C -0.56 -28.00 9.39 25.60 0.24 -27.76 16 24 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 25 C 0.03 1.54 5.46 84.65 0.46 2.00 16 26 N -0.91 -47.40 13.29 21.45 0.28 -47.11 16 27 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 28 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 29 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 30 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 31 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 2.39 7.14 -2.39 -0.02 2.37 16 33 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.17 7.68 5.76 -2.91 -0.02 7.67 16 35 H 0.26 -0.98 8.06 -2.91 -0.02 -1.01 16 36 H 0.05 1.39 7.92 -2.39 -0.02 1.37 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.58 7.99 -2.39 -0.02 0.56 16 40 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.56 7.99 -2.39 -0.02 0.54 16 43 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.07 3.11 7.18 -2.39 -0.02 3.09 16 45 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -83.29 379.62 -2.92 -86.21 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -4.12 Total: 35.06 kcal Atomic # 6 Polarization: 36.16 SS G_CDS: 8.15 Total: 44.31 kcal Atomic # 7 Polarization: -166.52 SS G_CDS: -8.91 Total: -175.43 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.06 Total: -32.64 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -83.29 -2.92 -86.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455116754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.898 kcal (2) G-P(sol) polarization free energy of solvation -83.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds