Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99862 * 2 1 4 4 C 1.50697 * 109.47085 * 66.04491 * 3 2 1 5 5 O 1.21279 * 120.00062 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99789 * 179.97438 * 4 3 2 7 7 C 1.46508 * 119.99785 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46637 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47419 * 299.99894 * 8 7 6 10 10 C 1.52994 * 109.47210 * 60.00525 * 8 7 6 11 11 C 1.50706 * 109.46527 * 180.02562 * 8 7 6 12 12 H 1.07995 * 120.00173 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99509 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00007 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99755 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47326 * 90.00052 * 15 13 11 17 17 H 1.48500 * 109.47171 * 210.00061 * 15 13 11 18 18 H 1.48504 * 109.47028 * 330.00392 * 15 13 11 19 19 C 1.38388 * 111.00003 * 236.04220 * 2 1 3 20 20 N 1.32908 * 120.76768 * 123.93006 * 19 2 1 21 21 C 1.32050 * 121.18886 * 180.02562 * 20 19 2 22 22 N 1.31637 * 122.46204 * 0.21298 * 21 20 19 23 23 C 1.32893 * 120.64326 * 359.57828 * 22 21 20 24 24 N 1.37205 * 134.92277 * 180.09476 * 23 22 21 25 25 H 0.97000 * 126.27551 * 0.24363 * 24 23 22 26 26 C 1.36313 * 107.44444 * 180.28472 * 24 23 22 27 27 N 1.30139 * 109.97698 * 359.97438 * 26 24 23 28 28 C 1.35471 * 109.44251 * 0.02562 * 27 26 24 29 29 H 1.08997 * 109.47115 * 183.95127 * 1 2 3 30 30 H 1.08996 * 109.47645 * 303.95555 * 1 2 3 31 31 H 1.09005 * 109.46983 * 63.95872 * 1 2 3 32 32 H 1.08997 * 109.46868 * 186.04231 * 3 2 1 33 33 H 1.09001 * 109.47282 * 306.04552 * 3 2 1 34 34 H 0.97003 * 120.00466 * 359.97438 * 6 4 3 35 35 H 1.08990 * 109.47459 * 300.00261 * 7 6 4 36 36 H 1.08998 * 109.47074 * 60.00690 * 7 6 4 37 37 H 1.09006 * 109.47262 * 60.00541 * 9 8 7 38 38 H 1.09005 * 109.47564 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.47409 * 300.00574 * 9 8 7 40 40 H 1.08997 * 109.47468 * 59.99522 * 10 8 7 41 41 H 1.09005 * 109.47390 * 179.97438 * 10 8 7 42 42 H 1.08997 * 109.46939 * 299.99326 * 10 8 7 43 43 H 0.97008 * 119.99652 * 180.02562 * 14 13 11 44 44 H 1.07999 * 118.76778 * 179.97438 * 21 20 19 45 45 H 1.08002 * 125.01221 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1410 6 7 2.0188 3.3198 1.5236 7 6 1.6697 3.9769 2.7857 8 6 2.2193 5.4049 2.7862 9 6 3.7413 5.3657 2.6355 10 6 1.6112 6.1857 1.6195 11 6 1.8607 6.0805 4.0847 12 1 1.2977 5.5449 4.8347 13 6 2.2525 7.3822 4.3156 14 7 2.9386 8.0342 3.4025 15 14 1.8087 8.2195 5.9254 16 1 2.8850 7.9813 6.9204 17 1 1.6583 9.6794 5.6989 18 1 0.5301 7.6634 6.4365 19 6 1.9650 -0.7217 -1.0716 20 7 2.8037 -0.1627 -1.9379 21 6 3.2816 -0.8434 -2.9636 22 7 2.9581 -2.0990 -3.1907 23 6 2.1289 -2.7428 -2.3758 24 7 1.6072 -4.0110 -2.3285 25 1 1.7841 -4.7281 -2.9572 26 6 0.7941 -4.0779 -1.2365 27 7 0.7875 -2.9338 -0.6163 28 6 1.5933 -2.0622 -1.2693 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5248 3.8008 0.8502 35 1 0.5855 4.0044 2.8933 36 1 2.1034 3.4209 3.6169 37 1 4.0010 4.8768 1.6965 38 1 4.1328 6.3830 2.6363 39 1 4.1745 4.8093 3.4667 40 1 0.5268 6.2137 1.7269 41 1 2.0023 7.2032 1.6201 42 1 1.8708 5.6969 0.6806 43 1 3.2145 8.9499 3.5651 44 1 3.9604 -0.3503 -3.6437 45 1 0.2374 -4.9515 -0.9310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = 83.429442 kcal Electronic energy + Delta-G solvation = -28131.258162 eV Core-core repulsion = 24185.745091 eV Total energy + Delta-G solvation = -3945.513070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -42.91812 -40.14510 -39.19730 -37.40559 -36.16506 -33.53499 -33.27134 -32.42021 -30.99586 -30.23410 -28.45382 -26.34280 -25.70732 -25.45829 -24.66418 -24.07312 -23.03890 -21.77552 -20.10275 -19.36614 -18.79227 -18.16453 -17.37764 -16.81091 -16.40430 -15.84154 -15.62991 -15.40164 -15.02520 -14.85590 -14.53846 -14.45581 -14.37679 -13.81418 -13.48808 -13.05882 -12.93806 -12.78662 -12.26775 -12.16467 -11.88844 -11.72634 -11.62673 -11.30098 -11.17857 -10.84142 -10.74754 -10.67948 -10.36439 -10.19231 -10.07307 -9.74247 -9.61641 -9.43438 -9.42586 -9.17230 -8.77013 -8.44102 -8.33410 -8.27244 -6.00731 -4.10650 0.36708 0.92988 2.09717 2.36366 2.95819 3.03804 3.29561 3.36540 3.40424 3.49762 3.65096 3.86545 3.90590 4.16340 4.39215 4.41942 4.63217 5.04070 5.10982 5.17716 5.26061 5.33128 5.41944 5.46524 5.54674 5.97085 6.04399 6.20102 6.26157 6.34866 6.52610 6.52909 6.69591 6.79860 6.84806 6.93445 6.95768 7.03808 7.05090 7.31615 7.37448 7.57490 7.71009 7.87435 8.02874 8.05864 8.17073 8.40101 8.70736 8.90139 9.55082 11.00611 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031126 B = 0.002195 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.354242 B =12755.560845 C =13352.604292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.442 5.442 3 C 0.040 3.960 4 C 0.504 3.496 5 O -0.537 6.537 6 N -0.714 5.714 7 C 0.134 3.866 8 C 0.056 3.944 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.434 3.566 20 N -0.570 5.570 21 C 0.349 3.651 22 N -0.546 5.546 23 C 0.288 3.712 24 N -0.582 5.582 25 H 0.430 0.570 26 C 0.258 3.742 27 N -0.453 5.453 28 C -0.066 4.066 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.034 0.966 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.399 0.601 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.007 0.993 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.007 0.993 43 H 0.260 0.740 44 H 0.207 0.793 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 -21.202 -15.704 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.155 5.155 3 C -0.090 4.090 4 C 0.288 3.712 5 O -0.414 6.414 6 N -0.366 5.366 7 C 0.011 3.989 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.185 3.815 20 N -0.295 5.295 21 C 0.057 3.943 22 N -0.269 5.269 23 C 0.045 3.955 24 N -0.198 5.198 25 H 0.270 0.730 26 C -0.031 4.031 27 N -0.172 5.172 28 C -0.192 4.192 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.234 0.766 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.223 0.777 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.004 -20.967 -14.456 25.546 hybrid contribution 0.005 -0.048 -0.507 0.509 sum -1.998 -21.014 -14.963 25.874 Atomic orbital electron populations 1.22797 0.81205 1.05539 1.02595 1.58080 1.10911 1.13832 1.32726 1.22045 1.03551 0.86736 0.96647 1.20273 0.80278 0.82315 0.88341 1.90660 1.40091 1.64216 1.46480 1.46258 1.56313 1.12670 1.21344 1.21718 0.99325 0.94878 0.82954 1.18360 0.92492 0.88077 0.95578 1.21836 0.98128 1.02885 0.96063 1.21829 0.98696 1.03537 0.94798 1.20985 1.35014 0.97585 1.00784 0.92449 1.24882 0.94851 0.97182 0.96640 1.69806 1.37958 1.11278 1.33401 0.86576 0.78910 0.78544 0.83862 1.20727 1.21295 1.19917 1.19522 0.88727 0.87795 0.85487 1.68519 1.16922 1.38211 1.05814 1.24618 0.93260 0.84811 0.91583 1.67317 1.17128 1.11068 1.31404 1.18871 0.95391 0.87258 0.93964 1.42843 1.39815 1.10559 1.26550 0.72954 1.25620 0.94219 0.98901 0.84312 1.70364 1.19472 0.99791 1.27527 1.19655 1.05234 0.95838 0.98436 0.88713 0.87467 0.94758 0.86416 0.89941 0.76611 0.92702 0.92668 0.97399 0.89607 0.95442 0.95470 0.89607 0.97430 0.93025 0.77702 0.75578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.94 60.07 0.54 0.85 16 2 N -0.44 -6.40 4.53 -182.03 -0.82 -7.22 16 3 C 0.04 0.55 4.73 -4.98 -0.02 0.53 16 4 C 0.50 8.62 7.52 -10.99 -0.08 8.53 16 5 O -0.54 -10.98 14.33 5.56 0.08 -10.90 16 6 N -0.71 -12.48 4.96 -60.29 -0.30 -12.77 16 7 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 8 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 9 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 10 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 11 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 14 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.43 5.87 6.42 -154.66 -0.99 4.88 16 20 N -0.57 -6.90 8.77 -13.61 -0.12 -7.02 16 21 C 0.35 3.53 12.25 -92.07 -1.13 2.40 16 22 N -0.55 -5.97 10.47 -13.90 -0.15 -6.11 16 23 C 0.29 3.13 8.51 -155.80 -1.33 1.81 16 24 N -0.58 -3.83 6.20 -13.25 -0.08 -3.91 16 25 H 0.43 1.28 8.96 -40.82 -0.37 0.92 16 26 C 0.26 1.67 12.98 -89.50 -1.16 0.51 16 27 N -0.45 -5.14 9.89 -11.85 -0.12 -5.26 16 28 C -0.07 -0.84 6.59 -84.55 -0.56 -1.39 16 29 H 0.09 1.26 6.38 -51.93 -0.33 0.92 16 30 H 0.11 1.62 5.83 -51.93 -0.30 1.32 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.12 1.54 7.55 -51.93 -0.39 1.14 16 33 H 0.08 1.00 8.12 -51.93 -0.42 0.57 16 34 H 0.40 6.26 6.16 -40.82 -0.25 6.01 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 42 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 43 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.23 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -33.18 363.34 -11.04 -44.23 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.91 Total: 5.78 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -4.60 Total: 5.01 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.07 Total: -65.33 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.18 -11.04 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.655 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds