Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99862 * 2 1 4 4 C 1.50697 * 109.47085 * 66.04491 * 3 2 1 5 5 O 1.21279 * 120.00062 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99789 * 179.97438 * 4 3 2 7 7 C 1.46508 * 119.99785 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46637 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47419 * 299.99894 * 8 7 6 10 10 C 1.52994 * 109.47210 * 60.00525 * 8 7 6 11 11 C 1.50706 * 109.46527 * 180.02562 * 8 7 6 12 12 H 1.07995 * 120.00173 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99509 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00007 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99755 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47326 * 90.00052 * 15 13 11 17 17 H 1.48500 * 109.47171 * 210.00061 * 15 13 11 18 18 H 1.48504 * 109.47028 * 330.00392 * 15 13 11 19 19 C 1.38388 * 111.00003 * 236.04220 * 2 1 3 20 20 N 1.32908 * 120.76768 * 123.93006 * 19 2 1 21 21 C 1.32050 * 121.18886 * 180.02562 * 20 19 2 22 22 N 1.31637 * 122.46204 * 0.21298 * 21 20 19 23 23 C 1.32893 * 120.64326 * 359.57828 * 22 21 20 24 24 N 1.37205 * 134.92277 * 180.09476 * 23 22 21 25 25 H 0.97000 * 126.27551 * 0.24363 * 24 23 22 26 26 C 1.36313 * 107.44444 * 180.28472 * 24 23 22 27 27 N 1.30139 * 109.97698 * 359.97438 * 26 24 23 28 28 C 1.35471 * 109.44251 * 0.02562 * 27 26 24 29 29 H 1.08997 * 109.47115 * 183.95127 * 1 2 3 30 30 H 1.08996 * 109.47645 * 303.95555 * 1 2 3 31 31 H 1.09005 * 109.46983 * 63.95872 * 1 2 3 32 32 H 1.08997 * 109.46868 * 186.04231 * 3 2 1 33 33 H 1.09001 * 109.47282 * 306.04552 * 3 2 1 34 34 H 0.97003 * 120.00466 * 359.97438 * 6 4 3 35 35 H 1.08990 * 109.47459 * 300.00261 * 7 6 4 36 36 H 1.08998 * 109.47074 * 60.00690 * 7 6 4 37 37 H 1.09006 * 109.47262 * 60.00541 * 9 8 7 38 38 H 1.09005 * 109.47564 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.47409 * 300.00574 * 9 8 7 40 40 H 1.08997 * 109.47468 * 59.99522 * 10 8 7 41 41 H 1.09005 * 109.47390 * 179.97438 * 10 8 7 42 42 H 1.08997 * 109.46939 * 299.99326 * 10 8 7 43 43 H 0.97008 * 119.99652 * 180.02562 * 14 13 11 44 44 H 1.07999 * 118.76778 * 179.97438 * 21 20 19 45 45 H 1.08002 * 125.01221 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1410 6 7 2.0188 3.3198 1.5236 7 6 1.6697 3.9769 2.7857 8 6 2.2193 5.4049 2.7862 9 6 3.7413 5.3657 2.6355 10 6 1.6112 6.1857 1.6195 11 6 1.8607 6.0805 4.0847 12 1 1.2977 5.5449 4.8347 13 6 2.2525 7.3822 4.3156 14 7 2.9386 8.0342 3.4025 15 14 1.8087 8.2195 5.9254 16 1 2.8850 7.9813 6.9204 17 1 1.6583 9.6794 5.6989 18 1 0.5301 7.6634 6.4365 19 6 1.9650 -0.7217 -1.0716 20 7 2.8037 -0.1627 -1.9379 21 6 3.2816 -0.8434 -2.9636 22 7 2.9581 -2.0990 -3.1907 23 6 2.1289 -2.7428 -2.3758 24 7 1.6072 -4.0110 -2.3285 25 1 1.7841 -4.7281 -2.9572 26 6 0.7941 -4.0779 -1.2365 27 7 0.7875 -2.9338 -0.6163 28 6 1.5933 -2.0622 -1.2693 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5248 3.8008 0.8502 35 1 0.5855 4.0044 2.8933 36 1 2.1034 3.4209 3.6169 37 1 4.0010 4.8768 1.6965 38 1 4.1328 6.3830 2.6363 39 1 4.1745 4.8093 3.4667 40 1 0.5268 6.2137 1.7269 41 1 2.0023 7.2032 1.6201 42 1 1.8708 5.6969 0.6806 43 1 3.2145 8.9499 3.5651 44 1 3.9604 -0.3503 -3.6437 45 1 0.2374 -4.9515 -0.9310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = 62.277549 kcal Electronic energy + Delta-G solvation = -28132.175377 eV Core-core repulsion = 24185.745091 eV Total energy + Delta-G solvation = -3946.430285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -43.62855 -41.23326 -40.28226 -38.60616 -37.72707 -34.98079 -34.30468 -33.17117 -32.79405 -31.09087 -29.60875 -27.53243 -27.52698 -27.20839 -26.18499 -24.82338 -23.98475 -22.48451 -21.49636 -20.57729 -20.13148 -18.97519 -18.46687 -17.96681 -17.60306 -17.24926 -16.74432 -16.59585 -16.56014 -15.94666 -15.71878 -15.67879 -15.12938 -14.89753 -14.76636 -14.62797 -14.35364 -14.17272 -13.91107 -13.27926 -13.14936 -13.06511 -12.92939 -12.63042 -12.62646 -12.58053 -12.51789 -12.21137 -12.11837 -11.51727 -11.45368 -11.24602 -10.95113 -10.72035 -10.64219 -10.40161 -10.37552 -10.23341 -9.89937 -9.18148 -8.00538 -6.15954 -0.40284 0.12435 1.43257 1.46185 1.51842 1.54272 1.66465 1.74630 1.91056 2.44276 2.56590 2.74932 3.04698 3.19887 3.22988 3.37527 3.68301 3.83790 4.03509 4.16604 4.31569 4.36041 4.44561 4.48090 4.52253 4.55470 4.74963 4.80075 4.95373 5.03684 5.09476 5.14099 5.22513 5.23406 5.33421 5.40023 5.62221 5.69413 5.70251 5.76914 5.83764 6.18219 6.24467 6.30826 6.45813 6.67632 6.69568 6.88356 7.08413 7.32880 7.51513 8.98222 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031126 B = 0.002195 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.354242 B =12755.560845 C =13352.604292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.461 5.461 3 C 0.054 3.946 4 C 0.506 3.494 5 O -0.572 6.572 6 N -0.707 5.707 7 C 0.151 3.849 8 C 0.051 3.949 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.527 4.527 12 H 0.044 0.956 13 C 0.027 3.973 14 N -0.899 5.899 15 Si 0.944 3.056 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.276 1.276 19 C 0.410 3.590 20 N -0.575 5.575 21 C 0.339 3.661 22 N -0.549 5.549 23 C 0.275 3.725 24 N -0.567 5.567 25 H 0.448 0.552 26 C 0.289 3.711 27 N -0.504 5.504 28 C -0.085 4.085 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.410 0.590 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.241 0.759 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -23.031 -17.543 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.176 5.176 3 C -0.075 4.075 4 C 0.292 3.708 5 O -0.451 6.451 6 N -0.360 5.360 7 C 0.027 3.973 8 C 0.050 3.950 9 C -0.180 4.180 10 C -0.179 4.179 11 C -0.566 4.566 12 H 0.062 0.938 13 C -0.172 4.172 14 N -0.537 5.537 15 Si 0.771 3.229 16 H -0.206 1.206 17 H -0.208 1.208 18 H -0.201 1.201 19 C 0.162 3.838 20 N -0.300 5.300 21 C 0.049 3.951 22 N -0.272 5.272 23 C 0.030 3.970 24 N -0.183 5.183 25 H 0.292 0.708 26 C 0.001 3.999 27 N -0.224 5.224 28 C -0.210 4.210 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.256 0.744 45 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -1.764 -22.819 -16.349 28.127 hybrid contribution -0.088 0.353 0.010 0.364 sum -1.852 -22.465 -16.339 27.840 Atomic orbital electron populations 1.22621 0.81355 1.05103 1.02027 1.58082 1.11168 1.14003 1.34378 1.21921 1.04121 0.86794 0.94661 1.20858 0.79077 0.81729 0.89132 1.90650 1.41537 1.64936 1.48022 1.46052 1.56572 1.12997 1.20349 1.21253 0.98076 0.93867 0.84116 1.18359 0.93016 0.88900 0.94689 1.21685 0.97409 1.01571 0.97312 1.21670 0.97912 1.02304 0.95991 1.21274 1.35163 0.98138 1.02011 0.93798 1.25449 0.94988 0.97711 0.99081 1.69910 1.38196 1.11317 1.34310 0.85777 0.78422 0.77745 0.80958 1.20597 1.20822 1.20104 1.19588 0.89898 0.88342 0.86020 1.68498 1.16704 1.38706 1.06083 1.25334 0.93450 0.84835 0.91506 1.67405 1.17028 1.11417 1.31319 1.19178 0.95543 0.88666 0.93636 1.42906 1.38936 1.09639 1.26862 0.70773 1.26711 0.91929 0.98775 0.82442 1.70357 1.21227 1.01382 1.29441 1.19850 1.05899 0.95972 0.99315 0.88847 0.89665 0.93666 0.85439 0.87970 0.75276 0.94142 0.94511 0.94254 0.91902 0.96455 0.96243 0.91957 0.94221 0.93060 0.74357 0.70418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 8.94 127.69 1.14 2.07 16 2 N -0.46 -13.26 4.53 -729.83 -3.30 -16.56 16 3 C 0.05 1.44 4.73 85.56 0.40 1.85 16 4 C 0.51 17.17 7.52 87.66 0.66 17.83 16 5 O -0.57 -23.84 14.33 -3.03 -0.04 -23.88 16 6 N -0.71 -24.18 4.96 -463.06 -2.30 -26.47 16 7 C 0.15 6.40 4.50 86.38 0.39 6.79 16 8 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 9 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 10 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 11 C -0.53 -27.97 8.01 25.60 0.21 -27.77 16 12 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 13 C 0.03 1.45 5.15 84.66 0.44 1.89 16 14 N -0.90 -48.00 9.35 21.45 0.20 -47.80 16 15 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C 0.41 10.82 6.42 133.46 0.86 11.68 16 20 N -0.58 -13.17 8.77 -196.97 -1.73 -14.90 16 21 C 0.34 6.26 12.25 180.85 2.22 8.47 16 22 N -0.55 -10.99 10.47 -197.89 -2.07 -13.06 16 23 C 0.27 5.47 8.51 133.86 1.14 6.61 16 24 N -0.57 -5.81 6.20 -195.84 -1.21 -7.03 16 25 H 0.45 1.17 8.96 -92.71 -0.83 0.34 16 26 C 0.29 2.86 12.98 179.96 2.34 5.20 16 27 N -0.50 -10.75 9.89 -191.40 -1.89 -12.65 16 28 C -0.09 -2.08 6.59 39.69 0.26 -1.82 16 29 H 0.09 2.52 6.38 -2.39 -0.02 2.51 16 30 H 0.08 2.67 5.83 -2.39 -0.01 2.66 16 31 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.13 3.14 7.55 -2.39 -0.02 3.13 16 33 H 0.10 2.29 8.12 -2.39 -0.02 2.27 16 34 H 0.41 12.08 6.16 -92.71 -0.57 11.51 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.45 6.86 -2.38 -0.02 1.44 16 38 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 42 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 43 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 44 H 0.24 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.28 -0.70 8.06 -2.91 -0.02 -0.73 16 Total: -1.00 -73.94 363.34 0.51 -73.42 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.35 Total: 18.51 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 11.18 Total: 25.52 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -12.30 Total: -138.46 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.94 0.51 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.702 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds