Wall clock time and date at job start Tue Mar 31 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47438 * 2 1 4 4 N 1.36521 * 125.51029 * 265.00329 * 3 2 1 5 5 H 0.97001 * 125.84429 * 359.96338 * 4 3 2 6 6 N 1.40161 * 108.31245 * 179.73814 * 4 3 2 7 7 H 0.96999 * 126.37799 * 180.29050 * 6 4 3 8 8 C 1.37557 * 107.24281 * 0.41497 * 6 4 3 9 9 N 1.32714 * 126.39375 * 179.84619 * 8 6 4 10 10 C 1.34427 * 119.99679 * 359.69534 * 9 8 6 11 11 O 1.22088 * 120.00071 * 0.02562 * 10 9 8 12 12 N 1.34426 * 119.99965 * 179.97438 * 10 9 8 13 13 C 1.32707 * 120.00468 * 179.97438 * 12 10 9 14 14 C 1.41330 * 126.38987 * 359.97438 * 13 12 10 15 15 C 1.34877 * 108.24874 * 180.02562 * 14 13 12 16 16 C 1.50699 * 125.50965 * 179.97438 * 15 14 13 17 17 N 1.36535 * 108.98105 * 0.02562 * 15 14 13 18 18 C 1.46501 * 125.84094 * 179.73610 * 17 15 14 19 19 C 1.50704 * 109.47237 * 85.00207 * 18 17 15 20 20 H 1.08003 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00322 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00220 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47363 * 89.99947 * 23 21 19 25 25 H 1.48503 * 109.47331 * 209.99965 * 23 21 19 26 26 H 1.48507 * 109.47109 * 329.99785 * 23 21 19 27 27 N 1.37555 * 126.39421 * 180.02562 * 13 12 10 28 28 H 0.96991 * 126.38213 * 0.02562 * 27 13 12 29 29 C 1.34879 * 125.50506 * 84.99660 * 3 2 1 30 30 C 1.50701 * 125.88226 * 0.03882 * 29 3 2 31 31 H 1.08997 * 109.47116 * 60.00386 * 1 2 3 32 32 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47404 * 300.00035 * 1 2 3 34 34 H 1.08998 * 109.47404 * 239.99965 * 2 1 3 35 35 H 1.09009 * 109.47229 * 120.00053 * 2 1 3 36 36 H 1.07999 * 125.87625 * 359.97438 * 14 13 12 37 37 H 1.09007 * 109.47055 * 270.03765 * 16 15 14 38 38 H 1.08995 * 109.47149 * 30.04079 * 16 15 14 39 39 H 1.09004 * 109.47202 * 150.04345 * 16 15 14 40 40 H 1.08999 * 109.46764 * 204.99932 * 18 17 15 41 41 H 1.08990 * 109.47571 * 325.00000 * 18 17 15 42 42 H 0.96997 * 120.00056 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.47319 * 269.98475 * 30 29 3 44 44 H 1.09002 * 109.46709 * 29.98452 * 30 29 3 45 45 H 1.08998 * 109.47257 * 149.97878 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3880 2.1361 -1.1071 5 1 2.3606 1.8169 -2.0226 6 7 2.7946 3.4125 -0.6948 7 1 3.0971 4.1334 -1.2690 8 6 2.6876 3.4516 0.6761 9 7 2.9793 4.4822 1.4596 10 6 3.4341 5.6274 0.9223 11 8 3.5783 5.7196 -0.2865 12 7 3.7291 6.6716 1.7159 13 6 4.1785 7.8020 1.1856 14 6 4.3972 8.0553 -0.1875 15 6 4.8559 9.3170 -0.3165 16 6 5.2164 9.9888 -1.6164 17 7 4.9420 9.8869 0.9213 18 6 5.4026 11.2476 1.2090 19 6 4.2521 12.2095 1.0599 20 1 3.2756 11.8439 0.7785 21 6 4.4462 13.5562 1.2827 22 7 5.6352 14.0013 1.6259 23 14 3.0199 14.7484 1.0986 24 1 2.3196 14.8873 2.4007 25 1 3.5347 16.0736 0.6697 26 1 2.0716 14.2321 0.0790 27 7 4.5195 8.9456 1.8698 28 1 4.4765 9.0759 2.8300 29 6 2.2032 2.1913 1.0938 30 6 1.9262 1.7790 2.5166 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.2270 7.3581 -0.9946 37 1 6.2681 9.8087 -1.8391 38 1 4.6004 9.5823 -2.4185 39 1 5.0415 11.0614 -1.5319 40 1 5.7849 11.2936 2.2287 41 1 6.1951 11.5181 0.5114 42 1 5.7716 14.9487 1.7830 43 1 0.8941 2.0207 2.7706 44 1 2.0844 0.7056 2.6212 45 1 2.5999 2.3125 3.1872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000479017403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:25 Heat of formation + Delta-G solvation = 157.178164 kcal Electronic energy + Delta-G solvation = -27475.534775 eV Core-core repulsion = 23533.219689 eV Total energy + Delta-G solvation = -3942.315086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.38366 -40.67210 -38.40171 -35.05655 -34.30487 -33.63468 -32.98372 -32.09733 -31.41539 -30.58238 -29.42158 -27.39416 -26.87219 -26.49156 -24.55651 -23.40938 -22.37672 -20.75763 -19.50374 -19.46328 -19.14531 -18.02482 -17.02051 -16.67359 -15.84271 -15.74102 -15.44715 -15.27202 -14.85682 -14.72904 -14.57828 -14.00063 -13.74425 -13.58906 -12.88470 -12.82683 -12.75996 -12.70699 -12.69652 -12.57830 -12.34629 -12.23742 -11.98778 -11.75636 -11.55716 -11.41724 -11.27729 -11.01727 -10.60088 -10.55075 -10.41357 -10.22076 -9.33984 -9.18277 -8.86657 -8.71608 -8.51552 -8.14394 -7.39456 -6.65622 -6.36406 -4.58755 1.23448 1.87970 1.91162 2.23648 2.73579 3.09455 3.17104 3.21399 3.55406 3.98080 4.10248 4.14306 4.39642 4.54943 4.79152 4.86069 4.92111 5.06242 5.14327 5.18509 5.20795 5.39376 5.42572 5.66496 5.73853 5.76624 5.84067 5.88471 5.90600 5.99699 6.01329 6.20650 6.32192 6.39835 6.56551 6.65289 6.68549 6.83149 6.92926 7.12126 7.45337 7.53306 7.59270 7.81205 7.88991 8.22806 8.29520 8.51940 8.81469 9.11264 9.92449 10.58728 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.002076 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.557996 B =13485.909666 C =13667.158433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C 0.164 3.836 4 N -0.503 5.503 5 H 0.437 0.563 6 N -0.499 5.499 7 H 0.453 0.547 8 C 0.480 3.520 9 N -0.606 5.606 10 C 0.655 3.345 11 O -0.675 6.675 12 N -0.668 5.668 13 C 0.477 3.523 14 C -0.336 4.336 15 C 0.185 3.815 16 C -0.097 4.097 17 N -0.346 5.346 18 C 0.256 3.744 19 C -0.553 4.553 20 H 0.069 0.931 21 C 0.069 3.931 22 N -0.887 5.887 23 Si 0.908 3.092 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.270 1.270 27 N -0.473 5.473 28 H 0.444 0.556 29 C -0.229 4.229 30 C -0.061 4.061 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.179 0.821 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.271 0.729 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -23.825 -6.566 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C 0.045 3.955 4 N -0.222 5.222 5 H 0.282 0.718 6 N -0.243 5.243 7 H 0.312 0.688 8 C 0.221 3.779 9 N -0.362 5.362 10 C 0.355 3.645 11 O -0.561 6.561 12 N -0.429 5.429 13 C 0.223 3.777 14 C -0.368 4.368 15 C 0.059 3.941 16 C -0.155 4.155 17 N -0.133 5.133 18 C 0.139 3.861 19 C -0.592 4.592 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.195 1.195 27 N -0.196 5.196 28 H 0.291 0.709 29 C -0.243 4.243 30 C -0.119 4.119 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.196 0.804 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.101 -23.034 -5.624 24.253 hybrid contribution -0.358 1.373 -1.671 2.192 sum -5.459 -21.661 -7.295 23.499 Atomic orbital electron populations 1.21757 0.93381 1.02474 1.03108 1.20350 0.96919 0.88463 1.04475 1.20675 0.95186 0.94118 0.85557 1.44004 1.64967 1.05018 1.08162 0.71823 1.47331 1.64554 1.03951 1.08491 0.68819 1.20510 0.86219 0.93631 0.77536 1.69543 1.35539 1.00619 1.30540 1.18179 0.77351 0.86224 0.82696 1.90385 1.60733 1.85710 1.19246 1.68386 1.37911 0.99502 1.37063 1.18976 0.85413 0.85501 0.87802 1.22226 1.19457 0.97480 0.97667 1.21231 0.93508 0.92946 0.86391 1.20611 1.02221 1.02122 0.90588 1.47793 1.57095 1.09421 0.99039 1.19963 0.96201 0.70474 0.99452 1.21409 0.96119 0.91594 1.50046 0.91324 1.24949 0.96485 0.98111 0.93991 1.69903 1.21612 1.15845 1.45031 0.86316 0.81595 0.79712 0.78913 1.20200 1.20733 1.19483 1.44405 1.62952 1.06807 1.05482 0.70881 1.18962 1.16521 0.92311 0.96502 1.19956 1.01852 0.99750 0.90320 0.92550 0.91514 0.91383 0.90329 0.88169 0.80358 0.90077 0.89658 0.89114 0.93205 0.91672 0.91931 0.92158 0.92513 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.89 37.16 0.37 -0.25 16 2 C -0.06 -0.27 6.18 -27.88 -0.17 -0.45 16 3 C 0.16 1.43 6.43 -81.70 -0.53 0.90 16 4 N -0.50 -4.53 7.40 33.67 0.25 -4.28 16 5 H 0.44 2.22 8.96 -182.55 -1.64 0.58 16 6 N -0.50 -7.12 7.05 31.35 0.22 -6.90 16 7 H 0.45 7.04 6.35 -182.55 -1.16 5.88 16 8 C 0.48 8.12 7.70 -155.30 -1.20 6.93 16 9 N -0.61 -12.87 10.58 -15.66 -0.17 -13.04 16 10 C 0.66 15.40 8.42 -87.55 -0.74 14.66 16 11 O -0.67 -15.32 10.65 4.84 0.05 -15.27 16 12 N -0.67 -16.06 10.62 -15.66 -0.17 -16.22 16 13 C 0.48 10.72 8.08 -155.31 -1.25 9.47 16 14 C -0.34 -7.09 9.41 -39.60 -0.37 -7.46 16 15 C 0.18 3.59 6.92 -81.69 -0.57 3.02 16 16 C -0.10 -1.48 9.92 36.01 0.36 -1.12 16 17 N -0.35 -7.19 3.64 -58.04 -0.21 -7.41 16 18 C 0.26 5.71 5.71 -5.19 -0.03 5.68 16 19 C -0.55 -13.72 9.39 -34.44 -0.32 -14.05 16 20 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -23.10 13.29 55.43 0.74 -22.37 16 23 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 N -0.47 -9.74 7.39 31.34 0.23 -9.51 16 28 H 0.44 8.19 8.96 -182.56 -1.64 6.55 16 29 C -0.23 -2.84 6.12 -104.64 -0.64 -3.48 16 30 C -0.06 -0.63 10.10 36.01 0.36 -0.26 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.35 7.21 -51.92 -0.37 -0.03 16 36 H 0.18 3.83 5.76 -52.49 -0.30 3.53 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.47 7.81 -51.93 -0.41 1.07 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.45 7.89 -51.93 -0.41 1.04 16 42 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.40 7.15 -51.93 -0.37 0.03 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -34.83 380.72 -12.81 -47.64 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -9.65 Total: 11.54 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -4.83 Total: 15.24 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: 0.90 Total: -79.72 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.05 Total: -15.27 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.83 -12.81 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479017403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.820 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds