Wall clock time and date at job start Tue Mar 31 2020 18:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47438 * 2 1 4 4 N 1.36521 * 125.51029 * 265.00329 * 3 2 1 5 5 H 0.97001 * 125.84429 * 359.96338 * 4 3 2 6 6 N 1.40161 * 108.31245 * 179.73814 * 4 3 2 7 7 H 0.96999 * 126.37799 * 180.29050 * 6 4 3 8 8 C 1.37557 * 107.24281 * 0.41497 * 6 4 3 9 9 N 1.32714 * 126.39375 * 179.84619 * 8 6 4 10 10 C 1.34427 * 119.99679 * 359.69534 * 9 8 6 11 11 O 1.22088 * 120.00071 * 0.02562 * 10 9 8 12 12 N 1.34426 * 119.99965 * 179.97438 * 10 9 8 13 13 C 1.32707 * 120.00468 * 179.97438 * 12 10 9 14 14 C 1.41330 * 126.38987 * 359.97438 * 13 12 10 15 15 C 1.34877 * 108.24874 * 180.02562 * 14 13 12 16 16 C 1.50699 * 125.50965 * 179.97438 * 15 14 13 17 17 N 1.36535 * 108.98105 * 0.02562 * 15 14 13 18 18 C 1.46501 * 125.84094 * 179.73610 * 17 15 14 19 19 C 1.50704 * 109.47237 * 85.00207 * 18 17 15 20 20 H 1.08003 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00322 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00220 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47363 * 89.99947 * 23 21 19 25 25 H 1.48503 * 109.47331 * 209.99965 * 23 21 19 26 26 H 1.48507 * 109.47109 * 329.99785 * 23 21 19 27 27 N 1.37555 * 126.39421 * 180.02562 * 13 12 10 28 28 H 0.96991 * 126.38213 * 0.02562 * 27 13 12 29 29 C 1.34879 * 125.50506 * 84.99660 * 3 2 1 30 30 C 1.50701 * 125.88226 * 0.03882 * 29 3 2 31 31 H 1.08997 * 109.47116 * 60.00386 * 1 2 3 32 32 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47404 * 300.00035 * 1 2 3 34 34 H 1.08998 * 109.47404 * 239.99965 * 2 1 3 35 35 H 1.09009 * 109.47229 * 120.00053 * 2 1 3 36 36 H 1.07999 * 125.87625 * 359.97438 * 14 13 12 37 37 H 1.09007 * 109.47055 * 270.03765 * 16 15 14 38 38 H 1.08995 * 109.47149 * 30.04079 * 16 15 14 39 39 H 1.09004 * 109.47202 * 150.04345 * 16 15 14 40 40 H 1.08999 * 109.46764 * 204.99932 * 18 17 15 41 41 H 1.08990 * 109.47571 * 325.00000 * 18 17 15 42 42 H 0.96997 * 120.00056 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.47319 * 269.98475 * 30 29 3 44 44 H 1.09002 * 109.46709 * 29.98452 * 30 29 3 45 45 H 1.08998 * 109.47257 * 149.97878 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3880 2.1361 -1.1071 5 1 2.3606 1.8169 -2.0226 6 7 2.7946 3.4125 -0.6948 7 1 3.0971 4.1334 -1.2690 8 6 2.6876 3.4516 0.6761 9 7 2.9793 4.4822 1.4596 10 6 3.4341 5.6274 0.9223 11 8 3.5783 5.7196 -0.2865 12 7 3.7291 6.6716 1.7159 13 6 4.1785 7.8020 1.1856 14 6 4.3972 8.0553 -0.1875 15 6 4.8559 9.3170 -0.3165 16 6 5.2164 9.9888 -1.6164 17 7 4.9420 9.8869 0.9213 18 6 5.4026 11.2476 1.2090 19 6 4.2521 12.2095 1.0599 20 1 3.2756 11.8439 0.7785 21 6 4.4462 13.5562 1.2827 22 7 5.6352 14.0013 1.6259 23 14 3.0199 14.7484 1.0986 24 1 2.3196 14.8873 2.4007 25 1 3.5347 16.0736 0.6697 26 1 2.0716 14.2321 0.0790 27 7 4.5195 8.9456 1.8698 28 1 4.4765 9.0759 2.8300 29 6 2.2032 2.1913 1.0938 30 6 1.9262 1.7790 2.5166 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.2270 7.3581 -0.9946 37 1 6.2681 9.8087 -1.8391 38 1 4.6004 9.5823 -2.4185 39 1 5.0415 11.0614 -1.5319 40 1 5.7849 11.2936 2.2287 41 1 6.1951 11.5181 0.5114 42 1 5.7716 14.9487 1.7830 43 1 0.8941 2.0207 2.7706 44 1 2.0844 0.7056 2.6212 45 1 2.5999 2.3125 3.1872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000479017403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:20 Heat of formation + Delta-G solvation = 131.782314 kcal Electronic energy + Delta-G solvation = -27476.636022 eV Core-core repulsion = 23533.219689 eV Total energy + Delta-G solvation = -3943.416332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.48091 -42.26718 -39.93405 -36.30451 -35.57432 -34.93880 -34.61269 -33.64074 -32.45061 -32.13974 -30.54886 -28.80311 -28.42110 -27.64549 -25.40434 -24.88731 -23.85827 -22.09957 -21.02947 -20.47179 -20.33891 -19.26469 -18.86775 -18.34022 -17.23038 -17.17401 -16.65305 -16.58793 -16.37842 -16.17297 -15.63773 -15.30775 -15.02863 -14.46621 -14.36208 -14.35127 -14.19035 -13.77036 -13.68029 -13.58258 -13.50826 -13.31870 -13.24378 -13.00896 -12.76144 -12.75293 -12.33290 -12.14835 -12.08395 -11.98765 -11.79900 -11.67916 -11.09125 -10.78968 -10.31303 -10.19291 -10.06569 -9.80343 -8.76622 -8.42554 -8.02929 -6.56628 -0.01378 0.53992 0.62774 0.90466 1.36398 1.39387 1.41962 1.49574 2.05637 2.29530 2.73764 2.93616 3.02611 3.34255 3.55555 3.69118 3.81444 4.14351 4.20795 4.28026 4.32938 4.45055 4.65364 4.73487 4.78803 4.83709 4.84389 4.89934 4.94776 5.04515 5.10161 5.14814 5.18061 5.22846 5.26939 5.32626 5.43925 5.49539 5.50861 5.69929 5.72041 5.98414 6.13806 6.24331 6.43880 6.53560 6.72831 6.94993 7.16538 7.25888 8.33890 8.66174 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.002076 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.557996 B =13485.909666 C =13667.158433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C 0.205 3.795 4 N -0.473 5.473 5 H 0.459 0.541 6 N -0.507 5.507 7 H 0.448 0.552 8 C 0.455 3.545 9 N -0.654 5.654 10 C 0.639 3.361 11 O -0.688 6.688 12 N -0.697 5.697 13 C 0.461 3.539 14 C -0.349 4.349 15 C 0.195 3.805 16 C -0.094 4.094 17 N -0.352 5.352 18 C 0.269 3.731 19 C -0.562 4.562 20 H 0.055 0.945 21 C 0.031 3.969 22 N -0.911 5.911 23 Si 0.964 3.036 24 H -0.278 1.278 25 H -0.274 1.274 26 H -0.270 1.270 27 N -0.474 5.474 28 H 0.449 0.551 29 C -0.265 4.265 30 C -0.055 4.055 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.174 0.826 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.274 0.726 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 -26.386 -8.504 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C 0.082 3.918 4 N -0.193 5.193 5 H 0.309 0.691 6 N -0.246 5.246 7 H 0.305 0.695 8 C 0.200 3.800 9 N -0.414 5.414 10 C 0.338 3.662 11 O -0.576 6.576 12 N -0.459 5.459 13 C 0.207 3.793 14 C -0.382 4.382 15 C 0.069 3.931 16 C -0.151 4.151 17 N -0.139 5.139 18 C 0.152 3.848 19 C -0.600 4.600 20 H 0.073 0.927 21 C -0.171 4.171 22 N -0.549 5.549 23 Si 0.789 3.211 24 H -0.204 1.204 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.198 5.198 28 H 0.297 0.703 29 C -0.278 4.278 30 C -0.113 4.113 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.191 0.809 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.087 -25.668 -7.625 27.460 hybrid contribution -0.132 1.868 -1.216 2.233 sum -6.219 -23.800 -8.841 26.139 Atomic orbital electron populations 1.21773 0.92807 1.03787 1.02375 1.20658 0.97043 0.84971 1.07123 1.21473 0.91166 0.95317 0.83824 1.44258 1.62540 1.02713 1.09794 0.69103 1.47248 1.63433 1.05814 1.08095 0.69544 1.21033 0.86275 0.94280 0.78393 1.69504 1.38785 1.01084 1.32056 1.18507 0.77871 0.86921 0.82863 1.90330 1.61889 1.86162 1.19229 1.68363 1.38979 1.00353 1.38180 1.19191 0.85756 0.85614 0.88754 1.22138 1.20778 0.98244 0.97018 1.21847 0.91666 0.92384 0.87158 1.20793 1.04351 1.01134 0.88868 1.47743 1.57416 1.09132 0.99588 1.19689 0.95530 0.70748 0.98870 1.21521 0.96128 0.92340 1.50027 0.92690 1.25598 0.98458 0.99408 0.93670 1.69965 1.22938 1.16341 1.45665 0.85451 0.78966 0.78125 0.78567 1.20352 1.19845 1.19508 1.44396 1.63130 1.06492 1.05785 0.70259 1.19262 1.18732 0.91192 0.98645 1.19943 1.01111 1.01647 0.88589 0.92930 0.89205 0.92617 0.87047 0.86185 0.80857 0.87386 0.87286 0.89900 0.94262 0.91240 0.91637 0.92057 0.88706 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 71.98 0.71 0.11 16 2 C -0.06 -0.22 6.18 29.85 0.18 -0.03 16 3 C 0.21 2.93 6.43 41.06 0.26 3.20 16 4 N -0.47 -7.27 7.40 -47.39 -0.35 -7.62 16 5 H 0.46 2.93 8.96 -213.28 -1.91 1.01 16 6 N -0.51 -14.42 7.05 -54.74 -0.39 -14.80 16 7 H 0.45 14.22 6.35 -213.28 -1.36 12.87 16 8 C 0.45 15.85 7.70 134.00 1.03 16.88 16 9 N -0.65 -29.53 10.58 -321.71 -3.40 -32.93 16 10 C 0.64 31.87 8.42 179.27 1.51 33.38 16 11 O -0.69 -32.93 10.65 -5.60 -0.06 -32.99 16 12 N -0.70 -35.63 10.62 -321.72 -3.42 -39.05 16 13 C 0.46 21.75 8.08 134.00 1.08 22.83 16 14 C -0.35 -15.21 9.41 22.26 0.21 -15.00 16 15 C 0.19 7.60 6.92 41.05 0.28 7.88 16 16 C -0.09 -2.72 9.92 71.24 0.71 -2.01 16 17 N -0.35 -14.88 3.64 -337.55 -1.23 -16.10 16 18 C 0.27 12.14 5.71 85.63 0.49 12.62 16 19 C -0.56 -28.01 9.39 25.60 0.24 -27.77 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.03 1.55 5.46 84.65 0.46 2.01 16 22 N -0.91 -47.28 13.29 21.45 0.28 -47.00 16 23 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 N -0.47 -20.36 7.39 -54.75 -0.40 -20.76 16 28 H 0.45 17.52 8.96 -213.29 -1.91 15.61 16 29 C -0.27 -6.33 6.12 -19.87 -0.12 -6.46 16 30 C -0.06 -1.10 10.10 71.24 0.72 -0.38 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.12 0.14 7.21 -2.38 -0.02 0.13 16 36 H 0.17 7.71 5.76 -2.91 -0.02 7.69 16 37 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.08 2.59 7.81 -2.38 -0.02 2.57 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 3.10 7.89 -2.39 -0.02 3.08 16 42 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.08 7.15 -2.39 -0.02 1.06 16 45 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.76 380.72 -3.28 -84.04 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -4.11 Total: 37.51 kcal Atomic # 6 Polarization: 39.49 SS G_CDS: 7.77 Total: 47.27 kcal Atomic # 7 Polarization: -169.36 SS G_CDS: -8.90 Total: -178.27 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.06 Total: -32.99 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -80.76 -3.28 -84.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479017403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.822 kcal (2) G-P(sol) polarization free energy of solvation -80.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds