Wall clock time and date at job start Tue Mar 31 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47548 * 120.00208 * 2 1 3 5 5 C 1.50698 * 109.47287 * 175.00023 * 4 2 1 6 6 C 1.34889 * 125.50875 * 275.29460 * 5 4 2 7 7 C 1.41321 * 108.24195 * 180.16240 * 6 5 4 8 8 N 1.32717 * 126.38989 * 179.82455 * 7 6 5 9 9 C 1.34430 * 120.00027 * 179.71711 * 8 7 6 10 10 O 1.22090 * 119.99929 * 0.02562 * 9 8 7 11 11 N 1.34422 * 119.99735 * 180.02562 * 9 8 7 12 12 C 1.32709 * 120.00021 * 179.97438 * 11 9 8 13 13 C 1.41327 * 126.39374 * 0.03155 * 12 11 9 14 14 C 1.34884 * 108.24929 * 179.97438 * 13 12 11 15 15 N 1.36521 * 108.98485 * 359.97438 * 14 13 12 16 16 C 1.46492 * 125.84732 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47208 * 84.97618 * 16 15 14 18 18 H 1.08005 * 119.99281 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00042 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46985 * 60.00264 * 21 19 17 23 23 H 1.48497 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47320 * 300.00270 * 21 19 17 25 25 N 1.37561 * 126.39716 * 179.97438 * 12 11 9 26 26 H 0.97005 * 126.37462 * 0.03756 * 25 12 11 27 27 N 1.37552 * 107.22054 * 359.56877 * 7 6 5 28 28 H 0.97001 * 126.37939 * 180.30113 * 27 7 6 29 29 N 1.36524 * 125.50751 * 94.97854 * 5 4 2 30 30 H 0.97003 * 125.84591 * 359.97438 * 29 5 4 31 31 H 1.08997 * 109.47209 * 299.99501 * 1 2 3 32 32 H 1.09000 * 109.47032 * 59.99996 * 1 2 3 33 33 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47065 * 240.00253 * 2 1 3 35 35 H 1.08997 * 109.46806 * 60.00252 * 3 2 1 36 36 H 1.09002 * 109.46936 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47305 * 299.99837 * 3 2 1 38 38 H 1.09001 * 109.46896 * 55.00068 * 4 2 1 39 39 H 1.09000 * 109.46678 * 295.00070 * 4 2 1 40 40 H 1.08003 * 125.87404 * 0.02587 * 6 5 4 41 41 H 1.08002 * 125.87188 * 0.20583 * 13 12 11 42 42 H 1.08007 * 125.50618 * 179.97438 * 14 13 12 43 43 H 1.09004 * 109.47538 * 204.97641 * 16 15 14 44 44 H 1.09004 * 109.47368 * 324.97537 * 16 15 14 45 45 H 0.97005 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8294 1.1888 6 6 4.2328 -1.7966 0.5511 7 6 5.6121 -1.5475 0.7318 8 7 6.6131 -2.2792 0.2583 9 6 7.8844 -1.9186 0.5047 10 8 8.1183 -0.9183 1.1644 11 7 8.8982 -2.6595 0.0247 12 6 10.1533 -2.3033 0.2675 13 6 10.5769 -1.1783 1.0107 14 6 11.9256 -1.1669 1.0279 15 7 12.3879 -2.2419 0.3247 16 6 13.7956 -2.5849 0.1088 17 6 14.3049 -3.3798 1.2835 18 1 13.6455 -3.6072 2.1082 19 6 15.6124 -3.8168 1.3054 20 7 16.4150 -3.5403 0.3010 21 14 16.2433 -4.8027 2.7611 22 1 15.4464 -6.0484 2.8980 23 1 17.6704 -5.1503 2.5424 24 1 16.1145 -3.9941 3.9999 25 7 11.2849 -2.9608 -0.1562 26 1 11.3141 -3.7711 -0.6888 27 7 5.7238 -0.4019 1.4850 28 1 6.5489 0.0220 1.7686 29 7 4.4233 0.0392 1.7655 30 1 4.1896 0.8270 2.2809 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6055 -1.7199 1.2951 39 1 1.7517 -0.1583 2.1369 40 1 3.8054 -2.6209 -0.0006 41 1 9.9317 -0.4546 1.4864 42 1 12.5404 -0.4269 1.5187 43 1 13.8897 -3.1791 -0.8002 44 1 14.3809 -1.6709 0.0075 45 1 17.3348 -3.8481 0.3162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494769996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:08 Heat of formation + Delta-G solvation = 159.333467 kcal Electronic energy + Delta-G solvation = -26877.125572 eV Core-core repulsion = 22934.903948 eV Total energy + Delta-G solvation = -3942.221625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.36334 -40.58721 -38.44416 -36.85979 -34.41410 -33.50646 -32.69759 -31.78109 -30.88409 -30.58194 -29.39385 -27.65651 -27.44682 -26.57240 -23.55349 -22.43714 -21.41098 -21.14566 -20.72407 -20.46724 -19.14030 -18.07731 -17.01915 -16.65739 -15.95190 -15.71153 -15.43709 -15.42563 -14.87544 -14.67862 -14.62743 -14.30549 -14.11568 -14.01710 -13.47592 -13.23202 -13.12389 -12.78970 -12.68232 -12.49748 -12.39760 -12.35743 -11.89985 -11.60409 -11.44056 -11.31139 -11.15543 -11.00446 -10.62916 -10.56796 -10.46031 -10.26927 -9.48572 -9.41929 -8.89523 -8.85954 -8.53255 -8.16334 -7.48158 -6.67569 -6.37415 -4.59013 1.22402 1.85632 1.92681 2.24642 2.77695 3.11766 3.16831 3.20666 3.56845 3.96770 4.10102 4.12465 4.36430 4.39499 4.41667 4.71495 4.83844 4.87521 5.07567 5.13378 5.17390 5.18245 5.29554 5.36007 5.39967 5.40383 5.46126 5.67297 5.74735 5.81829 5.89861 5.97887 6.07958 6.18503 6.46727 6.64024 6.64603 6.79969 6.88855 7.08535 7.44453 7.50740 7.58729 7.77508 7.85846 8.20715 8.27812 8.50822 8.79782 9.11155 9.91043 10.58778 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.039014 B = 0.001740 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.511399 B =16092.119371 C =16167.458293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.058 4.058 5 C 0.174 3.826 6 C -0.262 4.262 7 C 0.477 3.523 8 N -0.610 5.610 9 C 0.656 3.344 10 O -0.675 6.675 11 N -0.668 5.668 12 C 0.475 3.525 13 C -0.336 4.336 14 C 0.158 3.842 15 N -0.348 5.348 16 C 0.256 3.744 17 C -0.557 4.557 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.888 5.888 21 Si 0.910 3.090 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 N -0.473 5.473 26 H 0.444 0.556 27 N -0.499 5.499 28 H 0.453 0.547 29 N -0.502 5.502 30 H 0.436 0.564 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.184 0.816 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.946 10.052 1.640 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.212 4.212 4 C -0.097 4.097 5 C 0.054 3.946 6 C -0.293 4.293 7 C 0.219 3.781 8 N -0.367 5.367 9 C 0.356 3.644 10 O -0.561 6.561 11 N -0.428 5.428 12 C 0.221 3.779 13 C -0.369 4.369 14 C 0.014 3.986 15 N -0.134 5.134 16 C 0.139 3.861 17 C -0.596 4.596 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 N -0.197 5.197 26 H 0.291 0.709 27 N -0.244 5.244 28 H 0.311 0.689 29 N -0.220 5.220 30 H 0.281 0.719 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.182 0.818 41 H 0.197 0.803 42 H 0.201 0.799 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.184 9.236 1.042 27.785 hybrid contribution 1.292 0.741 1.657 2.228 sum -24.893 9.977 2.699 26.953 Atomic orbital electron populations 1.21839 0.94397 1.02196 1.02066 1.21152 0.95969 0.96368 0.97765 1.21941 1.01392 0.95824 1.02021 1.20567 0.86189 1.03484 0.99481 1.20813 0.92126 0.89241 0.92454 1.20442 0.89387 1.05536 1.13963 1.20652 0.95196 0.79624 0.82644 1.69582 0.98260 1.32035 1.36786 1.18182 0.87283 0.80841 0.78113 1.90385 1.87063 1.32014 1.46615 1.68399 0.94531 1.38433 1.41433 1.19006 0.86545 0.86555 0.85841 1.22433 0.93779 1.05760 1.14908 1.22741 0.95782 0.88957 0.91163 1.47915 1.00926 1.19181 1.45338 1.19995 0.68256 0.98855 0.98950 1.21408 0.96940 1.36271 1.04944 0.91305 1.24948 0.96154 0.95570 0.96833 1.69893 1.06993 1.44854 1.30688 0.86350 0.77811 0.80355 0.81866 1.19846 1.20822 1.19752 1.44466 0.97952 1.25808 1.51437 0.70862 1.47398 0.97383 1.26598 1.53002 0.68862 1.44145 0.97050 1.27254 1.53592 0.71910 0.92613 0.92299 0.92195 0.89845 0.92721 0.92493 0.92263 0.87992 0.90141 0.81807 0.80292 0.79904 0.93121 0.91567 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.19 37.16 0.34 -0.13 16 2 C -0.09 -0.39 2.91 -90.62 -0.26 -0.66 16 3 C -0.15 -0.72 9.01 37.16 0.33 -0.38 16 4 C -0.06 -0.24 5.22 -27.88 -0.15 -0.38 16 5 C 0.17 1.38 5.53 -81.69 -0.45 0.93 16 6 C -0.26 -3.05 10.71 -39.60 -0.42 -3.48 16 7 C 0.48 7.83 7.74 -155.31 -1.20 6.63 16 8 N -0.61 -12.88 10.62 -15.67 -0.17 -13.04 16 9 C 0.66 15.24 8.42 -87.55 -0.74 14.50 16 10 O -0.67 -15.06 10.65 4.84 0.05 -15.01 16 11 N -0.67 -15.86 10.62 -15.66 -0.17 -16.02 16 12 C 0.47 10.44 8.08 -155.30 -1.25 9.18 16 13 C -0.34 -6.82 9.52 -39.60 -0.38 -7.19 16 14 C 0.16 2.90 11.45 -16.65 -0.19 2.71 16 15 N -0.35 -6.99 3.64 -62.24 -0.23 -7.22 16 16 C 0.26 5.64 6.19 -5.19 -0.03 5.61 16 17 C -0.56 -13.86 9.39 -34.44 -0.32 -14.18 16 18 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 19 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -23.21 13.29 55.43 0.74 -22.47 16 21 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 N -0.47 -9.49 7.39 31.34 0.23 -9.26 16 26 H 0.44 8.02 8.96 -182.55 -1.64 6.39 16 27 N -0.50 -6.82 7.05 31.34 0.22 -6.60 16 28 H 0.45 6.81 6.35 -182.55 -1.16 5.65 16 29 N -0.50 -4.20 7.00 33.67 0.24 -3.96 16 30 H 0.44 2.08 8.96 -182.55 -1.64 0.45 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 0.35 7.04 -51.93 -0.37 -0.02 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.18 3.71 5.76 -52.49 -0.30 3.40 16 42 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -34.60 380.67 -12.91 -47.51 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -9.72 Total: 10.63 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -4.82 Total: 14.82 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: 0.87 Total: -78.57 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.05 Total: -15.01 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.60 -12.91 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494769996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.844 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds