Wall clock time and date at job start Tue Mar 31 2020 18:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47548 * 120.00208 * 2 1 3 5 5 C 1.50698 * 109.47287 * 175.00023 * 4 2 1 6 6 C 1.34889 * 125.50875 * 275.29460 * 5 4 2 7 7 C 1.41321 * 108.24195 * 180.16240 * 6 5 4 8 8 N 1.32717 * 126.38989 * 179.82455 * 7 6 5 9 9 C 1.34430 * 120.00027 * 179.71711 * 8 7 6 10 10 O 1.22090 * 119.99929 * 0.02562 * 9 8 7 11 11 N 1.34422 * 119.99735 * 180.02562 * 9 8 7 12 12 C 1.32709 * 120.00021 * 179.97438 * 11 9 8 13 13 C 1.41327 * 126.39374 * 0.03155 * 12 11 9 14 14 C 1.34884 * 108.24929 * 179.97438 * 13 12 11 15 15 N 1.36521 * 108.98485 * 359.97438 * 14 13 12 16 16 C 1.46492 * 125.84732 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47208 * 84.97618 * 16 15 14 18 18 H 1.08005 * 119.99281 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00042 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46985 * 60.00264 * 21 19 17 23 23 H 1.48497 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47320 * 300.00270 * 21 19 17 25 25 N 1.37561 * 126.39716 * 179.97438 * 12 11 9 26 26 H 0.97005 * 126.37462 * 0.03756 * 25 12 11 27 27 N 1.37552 * 107.22054 * 359.56877 * 7 6 5 28 28 H 0.97001 * 126.37939 * 180.30113 * 27 7 6 29 29 N 1.36524 * 125.50751 * 94.97854 * 5 4 2 30 30 H 0.97003 * 125.84591 * 359.97438 * 29 5 4 31 31 H 1.08997 * 109.47209 * 299.99501 * 1 2 3 32 32 H 1.09000 * 109.47032 * 59.99996 * 1 2 3 33 33 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47065 * 240.00253 * 2 1 3 35 35 H 1.08997 * 109.46806 * 60.00252 * 3 2 1 36 36 H 1.09002 * 109.46936 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47305 * 299.99837 * 3 2 1 38 38 H 1.09001 * 109.46896 * 55.00068 * 4 2 1 39 39 H 1.09000 * 109.46678 * 295.00070 * 4 2 1 40 40 H 1.08003 * 125.87404 * 0.02587 * 6 5 4 41 41 H 1.08002 * 125.87188 * 0.20583 * 13 12 11 42 42 H 1.08007 * 125.50618 * 179.97438 * 14 13 12 43 43 H 1.09004 * 109.47538 * 204.97641 * 16 15 14 44 44 H 1.09004 * 109.47368 * 324.97537 * 16 15 14 45 45 H 0.97005 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8294 1.1888 6 6 4.2328 -1.7966 0.5511 7 6 5.6121 -1.5475 0.7318 8 7 6.6131 -2.2792 0.2583 9 6 7.8844 -1.9186 0.5047 10 8 8.1183 -0.9183 1.1644 11 7 8.8982 -2.6595 0.0247 12 6 10.1533 -2.3033 0.2675 13 6 10.5769 -1.1783 1.0107 14 6 11.9256 -1.1669 1.0279 15 7 12.3879 -2.2419 0.3247 16 6 13.7956 -2.5849 0.1088 17 6 14.3049 -3.3798 1.2835 18 1 13.6455 -3.6072 2.1082 19 6 15.6124 -3.8168 1.3054 20 7 16.4150 -3.5403 0.3010 21 14 16.2433 -4.8027 2.7611 22 1 15.4464 -6.0484 2.8980 23 1 17.6704 -5.1503 2.5424 24 1 16.1145 -3.9941 3.9999 25 7 11.2849 -2.9608 -0.1562 26 1 11.3141 -3.7711 -0.6888 27 7 5.7238 -0.4019 1.4850 28 1 6.5489 0.0220 1.7686 29 7 4.4233 0.0392 1.7655 30 1 4.1896 0.8270 2.2809 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6055 -1.7199 1.2951 39 1 1.7517 -0.1583 2.1369 40 1 3.8054 -2.6209 -0.0006 41 1 9.9317 -0.4546 1.4864 42 1 12.5404 -0.4269 1.5187 43 1 13.8897 -3.1791 -0.8002 44 1 14.3809 -1.6709 0.0075 45 1 17.3348 -3.8481 0.3162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494769996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:07 Heat of formation + Delta-G solvation = 134.622368 kcal Electronic energy + Delta-G solvation = -26878.197126 eV Core-core repulsion = 22934.903948 eV Total energy + Delta-G solvation = -3943.293178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42048 -42.15240 -39.91712 -37.38550 -36.04806 -35.00990 -34.31012 -32.67180 -32.44387 -32.23957 -30.60188 -28.34693 -28.13978 -27.84638 -25.20698 -23.95777 -22.69209 -22.31827 -21.87769 -21.24776 -20.18595 -19.27835 -18.85421 -18.31350 -17.18714 -17.07919 -16.62087 -16.50633 -16.43364 -16.11174 -15.67318 -15.30949 -15.17876 -14.80638 -14.61868 -14.57722 -14.37775 -14.20583 -14.08273 -13.66790 -13.15125 -13.09939 -12.91717 -12.74160 -12.66242 -12.32074 -12.19026 -12.06300 -12.01647 -11.81593 -11.60015 -11.44150 -11.20849 -10.77555 -10.49286 -10.35425 -10.05614 -9.79048 -8.82243 -8.44028 -8.04086 -6.56140 0.01498 0.58127 0.67556 0.90710 1.39001 1.40892 1.47623 1.50245 2.11252 2.30591 2.78812 2.94730 3.06187 3.35370 3.57618 3.78583 3.92787 4.02022 4.07064 4.31047 4.37506 4.45544 4.48182 4.59236 4.80418 4.85709 4.88012 4.91006 4.94303 5.02757 5.09029 5.16271 5.16536 5.25984 5.35849 5.40637 5.46845 5.51255 5.56561 5.60518 5.71035 5.98458 6.12758 6.24100 6.43802 6.54457 6.73782 6.95515 7.17352 7.27528 8.35652 8.66497 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.039014 B = 0.001740 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.511399 B =16092.119371 C =16167.458293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.156 4.156 4 C -0.054 4.054 5 C 0.217 3.783 6 C -0.292 4.292 7 C 0.455 3.545 8 N -0.661 5.661 9 C 0.639 3.361 10 O -0.688 6.688 11 N -0.698 5.698 12 C 0.458 3.542 13 C -0.347 4.347 14 C 0.176 3.824 15 N -0.351 5.351 16 C 0.269 3.731 17 C -0.569 4.569 18 H 0.058 0.942 19 C 0.030 3.970 20 N -0.913 5.913 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.277 1.277 24 H -0.267 1.267 25 N -0.473 5.473 26 H 0.449 0.551 27 N -0.505 5.505 28 H 0.448 0.552 29 N -0.471 5.471 30 H 0.458 0.542 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.225 0.775 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.293 11.316 3.318 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.214 4.214 4 C -0.093 4.093 5 C 0.094 3.906 6 C -0.323 4.323 7 C 0.201 3.799 8 N -0.422 5.422 9 C 0.339 3.661 10 O -0.576 6.576 11 N -0.460 5.460 12 C 0.204 3.796 13 C -0.380 4.380 14 C 0.033 3.967 15 N -0.137 5.137 16 C 0.151 3.849 17 C -0.607 4.607 18 H 0.076 0.924 19 C -0.172 4.172 20 N -0.550 5.550 21 Si 0.790 3.210 22 H -0.203 1.203 23 H -0.202 1.202 24 H -0.192 1.192 25 N -0.197 5.197 26 H 0.297 0.703 27 N -0.245 5.245 28 H 0.304 0.696 29 N -0.191 5.191 30 H 0.307 0.693 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.192 0.808 41 H 0.192 0.808 42 H 0.241 0.759 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.602 10.564 2.753 30.615 hybrid contribution 1.722 0.513 1.186 2.153 sum -26.880 11.077 3.939 29.339 Atomic orbital electron populations 1.21807 0.93094 1.02776 1.02501 1.21112 0.96918 0.95809 0.97155 1.21973 1.00157 0.96381 1.02865 1.20837 0.82359 1.05379 1.00731 1.21467 0.93783 0.86647 0.88734 1.20630 0.87477 1.07787 1.16408 1.21106 0.96069 0.80035 0.82726 1.69535 0.97988 1.34600 1.40074 1.18495 0.88100 0.81055 0.78484 1.90332 1.87427 1.32330 1.47470 1.68367 0.95418 1.39591 1.42606 1.19227 0.86541 0.87424 0.86437 1.22351 0.94587 1.05567 1.15519 1.23316 0.95413 0.88476 0.89544 1.47820 1.00456 1.19652 1.45795 1.19716 0.69023 0.98539 0.97572 1.21600 0.97029 1.36661 1.05384 0.92400 1.25608 0.96368 0.96333 0.98890 1.69959 1.07304 1.45758 1.31999 0.85492 0.77353 0.78840 0.79354 1.20295 1.20196 1.19223 1.44458 0.97612 1.26052 1.51603 0.70275 1.47295 0.99332 1.25964 1.51863 0.69562 1.44368 0.94950 1.27510 1.52305 0.69310 0.91456 0.92655 0.91583 0.91191 0.90886 0.94297 0.92622 0.85961 0.87022 0.80769 0.80829 0.75898 0.94091 0.91001 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.42 9.19 71.98 0.66 0.24 16 2 C -0.09 -0.48 2.91 -10.79 -0.03 -0.51 16 3 C -0.16 -1.02 9.01 71.98 0.65 -0.37 16 4 C -0.05 -0.21 5.22 29.85 0.16 -0.05 16 5 C 0.22 2.87 5.53 41.06 0.23 3.10 16 6 C -0.29 -6.61 10.71 22.26 0.24 -6.37 16 7 C 0.45 15.34 7.74 134.00 1.04 16.38 16 8 N -0.66 -29.47 10.62 -321.72 -3.42 -32.89 16 9 C 0.64 31.34 8.42 179.27 1.51 32.85 16 10 O -0.69 -32.19 10.65 -5.61 -0.06 -32.25 16 11 N -0.70 -34.98 10.62 -321.72 -3.42 -38.40 16 12 C 0.46 20.90 8.08 134.00 1.08 21.98 16 13 C -0.35 -14.37 9.52 22.26 0.21 -14.16 16 14 C 0.18 6.34 11.45 83.19 0.95 7.29 16 15 N -0.35 -14.12 3.64 -350.83 -1.28 -15.39 16 16 C 0.27 11.80 6.19 85.64 0.53 12.33 16 17 C -0.57 -28.08 9.39 25.60 0.24 -27.84 16 18 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 19 C 0.03 1.51 5.46 84.65 0.46 1.98 16 20 N -0.91 -47.34 13.29 21.45 0.28 -47.06 16 21 Si 0.96 40.31 29.54 68.60 2.03 42.34 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 N -0.47 -19.50 7.39 -54.75 -0.40 -19.90 16 26 H 0.45 16.91 8.96 -213.27 -1.91 15.00 16 27 N -0.51 -13.75 7.05 -54.75 -0.39 -14.14 16 28 H 0.45 13.74 6.35 -213.28 -1.36 12.39 16 29 N -0.47 -6.77 7.00 -47.39 -0.33 -7.10 16 30 H 0.46 2.77 8.96 -213.28 -1.91 0.86 16 31 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.04 0.39 7.04 -2.39 -0.02 0.37 16 37 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.11 -0.12 8.14 -2.39 -0.02 -0.13 16 40 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.17 7.39 5.76 -2.91 -0.02 7.38 16 42 H 0.22 5.97 8.06 -2.91 -0.02 5.94 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.27 13.52 8.31 -92.70 -0.77 12.75 16 Total: -1.00 -78.87 380.67 -3.18 -82.05 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -4.13 Total: 35.89 kcal Atomic # 6 Polarization: 38.93 SS G_CDS: 7.93 Total: 46.85 kcal Atomic # 7 Polarization: -165.93 SS G_CDS: -8.95 Total: -174.88 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.06 Total: -32.25 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -78.87 -3.18 -82.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494769996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.675 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds