Wall clock time and date at job start Tue Mar 31 2020 17:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40405 * 107.87064 * 0.36692 * 12 11 10 14 14 N 1.40196 * 125.97001 * 179.74102 * 13 12 11 15 15 C 1.34768 * 120.00423 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00079 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46819 * 179.97438 * 18 17 15 20 20 C 1.53008 * 109.46942 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.46942 * 180.02562 * 20 19 18 22 22 N 1.46493 * 109.47254 * 179.97438 * 21 20 19 23 23 C 1.36882 * 126.39870 * 90.00059 * 22 21 20 24 24 C 1.34669 * 106.82080 * 180.02562 * 23 22 21 25 25 N 1.34127 * 108.02161 * 0.02562 * 24 23 22 26 26 C 1.30508 * 109.25313 * 359.72165 * 25 24 23 27 27 N 1.31207 * 108.05174 * 359.77109 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.07999 * 126.06995 * 0.02562 * 11 10 9 32 32 H 1.08004 * 126.06640 * 180.13892 * 12 11 10 33 33 H 0.97000 * 119.99746 * 180.02562 * 14 13 12 34 34 H 0.96994 * 120.00039 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.47335 * 299.99969 * 18 17 15 36 36 H 1.09001 * 109.46861 * 60.00214 * 18 17 15 37 37 H 1.09000 * 109.47148 * 299.99675 * 19 18 17 38 38 H 1.09001 * 109.47403 * 60.00103 * 19 18 17 39 39 H 1.09000 * 109.46814 * 299.99733 * 20 19 18 40 40 H 1.09001 * 109.46919 * 60.00295 * 20 19 18 41 41 H 1.08997 * 109.47299 * 300.00036 * 21 20 19 42 42 H 1.09010 * 109.47318 * 59.99882 * 21 20 19 43 43 H 1.08004 * 126.58840 * 359.96584 * 23 22 21 44 44 H 1.08000 * 125.99015 * 179.97438 * 24 23 22 45 45 H 1.07996 * 125.64831 * 180.28993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8673 -4.9126 -0.6204 14 7 4.9616 -5.4614 -1.3036 15 6 5.5284 -6.6018 -0.8627 16 8 5.0903 -7.1552 0.1274 17 7 6.5808 -7.1291 -1.5193 18 6 7.1965 -8.3691 -1.0403 19 6 8.3609 -8.7477 -1.9576 20 6 9.0036 -10.0432 -1.4578 21 6 10.1685 -10.4214 -2.3747 22 7 10.7842 -11.6614 -1.8959 23 6 10.4383 -12.9342 -2.2621 24 6 11.2527 -13.7685 -1.5881 25 7 12.0732 -13.0255 -0.8306 26 6 11.8020 -11.7622 -1.0140 27 7 3.2287 -3.8133 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5908 -4.7508 1.7301 32 1 3.5593 -6.3454 1.0457 33 1 5.3109 -5.0201 -2.0937 34 1 6.9305 -6.6875 -2.3089 35 1 7.5657 -8.2230 -0.0253 36 1 6.4553 -9.1684 -1.0458 37 1 7.9913 -8.8940 -2.9725 38 1 9.1022 -7.9485 -1.9526 39 1 9.3732 -9.8973 -0.4428 40 1 8.2622 -10.8422 -1.4633 41 1 9.7993 -10.5671 -3.3899 42 1 10.9098 -9.6222 -2.3689 43 1 9.6609 -13.2153 -2.9572 44 1 11.2459 -14.8469 -1.6467 45 1 12.3065 -10.9346 -0.5377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525232876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:00 Heat of formation + Delta-G solvation = 109.178054 kcal Electronic energy + Delta-G solvation = -25973.609546 eV Core-core repulsion = 22029.213019 eV Total energy + Delta-G solvation = -3944.396527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43632 -40.82440 -39.69679 -37.07960 -35.15282 -34.71509 -33.69689 -32.56371 -30.80978 -29.87675 -29.39014 -28.37871 -26.24079 -24.50860 -23.09046 -22.18038 -21.76355 -21.75544 -21.24915 -20.56537 -19.90863 -18.16166 -17.74901 -17.19413 -16.85373 -16.55759 -15.99791 -15.55833 -15.45046 -14.82767 -14.67421 -14.50544 -14.34807 -14.14522 -13.80986 -13.76847 -13.66971 -13.26157 -13.13179 -12.59462 -12.46255 -12.36686 -12.16082 -11.97604 -11.83949 -11.42122 -11.17650 -10.83182 -10.49061 -10.38802 -10.19993 -10.17587 -10.06687 -9.77631 -9.38678 -9.00048 -8.94665 -8.59514 -8.20764 -7.50170 -6.59351 -4.33477 1.61673 2.18970 2.36892 2.55737 2.78827 3.01131 3.36300 3.37795 3.45841 3.57529 3.74186 3.95486 4.00909 4.16347 4.31117 4.35521 4.39998 4.44013 4.51037 4.68949 4.75683 4.99301 5.02915 5.06581 5.14316 5.28556 5.32603 5.41477 5.52483 5.58973 5.69163 5.81411 6.09077 6.17457 6.31368 6.39828 6.44162 6.62667 6.73064 6.74919 6.91939 7.38931 7.61015 7.66537 7.82783 7.85348 8.33080 8.48911 8.54153 8.61545 9.34804 10.78136 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.033461 B = 0.001423 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.594174 B =19675.423740 C =20133.924924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.284 4.284 13 C 0.277 3.723 14 N -0.643 5.643 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.746 5.746 18 C 0.141 3.859 19 C -0.129 4.129 20 C -0.132 4.132 21 C 0.104 3.896 22 N -0.459 5.459 23 C -0.057 4.057 24 C -0.031 4.031 25 N -0.498 5.498 26 C 0.181 3.819 27 N -0.305 5.305 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.397 0.603 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.942 -21.829 -6.989 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.646 4.646 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.022 3.978 14 N -0.293 5.293 15 C 0.412 3.588 16 O -0.442 6.442 17 N -0.403 5.403 18 C 0.016 3.984 19 C -0.167 4.167 20 C -0.171 4.171 21 C -0.018 4.018 22 N -0.142 5.142 23 C -0.190 4.190 24 C -0.179 4.179 25 N -0.216 5.216 26 C -0.101 4.101 27 N -0.136 5.136 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.242 0.758 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.190 0.810 44 H 0.186 0.814 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 19.716 -19.831 -6.413 28.691 hybrid contribution -0.127 -1.546 -0.792 1.742 sum 19.589 -21.378 -7.206 29.878 Atomic orbital electron populations 1.70851 1.06777 1.30433 1.45953 1.25920 0.96312 1.02792 0.93140 0.83417 0.74805 0.74578 0.76810 1.20513 1.21247 1.21174 1.22108 0.95380 0.90468 1.56693 0.91859 1.19751 0.86313 0.82831 0.97965 1.48761 1.23425 1.19578 1.18269 1.22559 1.00471 0.90165 0.96705 1.21523 1.02091 1.06349 1.01586 1.18783 0.90737 0.93964 0.94286 1.41370 1.31581 1.25048 1.31326 1.15615 0.80058 0.80176 0.82973 1.90877 1.64486 1.62224 1.26612 1.44989 1.34176 1.28211 1.32919 1.21143 0.94113 0.85291 0.97811 1.21713 0.97659 0.97361 1.00011 1.21863 0.97202 0.97993 1.00034 1.21945 0.96370 0.84467 0.99031 1.45621 1.27542 1.06907 1.34141 1.22771 1.05593 0.83579 1.07014 1.22336 0.96654 0.99865 0.99066 1.70310 1.26123 1.01595 1.23533 1.25044 0.92377 0.96792 0.95922 1.77336 1.03757 1.16253 1.16247 0.92272 0.93619 0.94802 0.81515 0.82057 0.75833 0.76913 0.91246 0.91318 0.90687 0.90592 0.90459 0.90547 0.88833 0.88576 0.80954 0.81431 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.65 55.43 0.76 -25.47 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.74 29.90 -169.99 -5.08 19.66 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.61 -17.06 9.24 -34.44 -0.32 -17.38 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.30 5.57 -5.19 -0.03 6.28 16 10 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.28 -5.66 9.61 -39.83 -0.38 -6.05 16 13 C 0.28 5.53 8.11 -154.36 -1.25 4.28 16 14 N -0.64 -9.64 5.45 -15.51 -0.08 -9.72 16 15 C 0.71 9.91 8.53 -86.92 -0.74 9.17 16 16 O -0.57 -9.95 13.47 5.29 0.07 -9.88 16 17 N -0.75 -6.30 5.56 -65.23 -0.36 -6.67 16 18 C 0.14 0.95 5.67 -4.04 -0.02 0.93 16 19 C -0.13 -0.36 5.33 -26.73 -0.14 -0.50 16 20 C -0.13 -0.38 5.54 -26.73 -0.15 -0.53 16 21 C 0.10 0.24 6.15 -4.05 -0.02 0.22 16 22 N -0.46 -2.47 2.75 -118.58 -0.33 -2.80 16 23 C -0.06 -0.34 11.58 -16.56 -0.19 -0.53 16 24 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 25 N -0.50 -4.90 11.25 -14.66 -0.16 -5.06 16 26 C 0.18 1.25 12.56 -90.37 -1.14 0.12 16 27 N -0.31 -7.02 12.42 31.44 0.39 -6.63 16 28 H 0.27 7.57 7.22 -40.82 -0.29 7.28 16 29 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 30 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 31 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 32 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 33 H 0.41 4.80 8.84 -40.82 -0.36 4.44 16 34 H 0.40 2.10 8.49 -40.82 -0.35 1.76 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.10 0.09 8.14 -51.92 -0.42 -0.33 16 43 H 0.17 0.57 8.06 -52.48 -0.42 0.14 16 44 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.20 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -37.75 387.68 -10.50 -48.25 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.42 Total: 3.26 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.89 Total: -3.11 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.02 Total: -64.02 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.75 -10.50 -48.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525232876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.429 kcal (2) G-P(sol) polarization free energy of solvation -37.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds