Wall clock time and date at job start Tue Mar 31 2020 17:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40405 * 107.87064 * 0.36692 * 12 11 10 14 14 N 1.40196 * 125.97001 * 179.74102 * 13 12 11 15 15 C 1.34768 * 120.00423 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00079 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46819 * 179.97438 * 18 17 15 20 20 C 1.53008 * 109.46942 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.46942 * 180.02562 * 20 19 18 22 22 N 1.46493 * 109.47254 * 179.97438 * 21 20 19 23 23 C 1.36882 * 126.39870 * 90.00059 * 22 21 20 24 24 C 1.34669 * 106.82080 * 180.02562 * 23 22 21 25 25 N 1.34127 * 108.02161 * 0.02562 * 24 23 22 26 26 C 1.30508 * 109.25313 * 359.72165 * 25 24 23 27 27 N 1.31207 * 108.05174 * 359.77109 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.07999 * 126.06995 * 0.02562 * 11 10 9 32 32 H 1.08004 * 126.06640 * 180.13892 * 12 11 10 33 33 H 0.97000 * 119.99746 * 180.02562 * 14 13 12 34 34 H 0.96994 * 120.00039 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.47335 * 299.99969 * 18 17 15 36 36 H 1.09001 * 109.46861 * 60.00214 * 18 17 15 37 37 H 1.09000 * 109.47148 * 299.99675 * 19 18 17 38 38 H 1.09001 * 109.47403 * 60.00103 * 19 18 17 39 39 H 1.09000 * 109.46814 * 299.99733 * 20 19 18 40 40 H 1.09001 * 109.46919 * 60.00295 * 20 19 18 41 41 H 1.08997 * 109.47299 * 300.00036 * 21 20 19 42 42 H 1.09010 * 109.47318 * 59.99882 * 21 20 19 43 43 H 1.08004 * 126.58840 * 359.96584 * 23 22 21 44 44 H 1.08000 * 125.99015 * 179.97438 * 24 23 22 45 45 H 1.07996 * 125.64831 * 180.28993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8673 -4.9126 -0.6204 14 7 4.9616 -5.4614 -1.3036 15 6 5.5284 -6.6018 -0.8627 16 8 5.0903 -7.1552 0.1274 17 7 6.5808 -7.1291 -1.5193 18 6 7.1965 -8.3691 -1.0403 19 6 8.3609 -8.7477 -1.9576 20 6 9.0036 -10.0432 -1.4578 21 6 10.1685 -10.4214 -2.3747 22 7 10.7842 -11.6614 -1.8959 23 6 10.4383 -12.9342 -2.2621 24 6 11.2527 -13.7685 -1.5881 25 7 12.0732 -13.0255 -0.8306 26 6 11.8020 -11.7622 -1.0140 27 7 3.2287 -3.8133 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5908 -4.7508 1.7301 32 1 3.5593 -6.3454 1.0457 33 1 5.3109 -5.0201 -2.0937 34 1 6.9305 -6.6875 -2.3089 35 1 7.5657 -8.2230 -0.0253 36 1 6.4553 -9.1684 -1.0458 37 1 7.9913 -8.8940 -2.9725 38 1 9.1022 -7.9485 -1.9526 39 1 9.3732 -9.8973 -0.4428 40 1 8.2622 -10.8422 -1.4633 41 1 9.7993 -10.5671 -3.3899 42 1 10.9098 -9.6222 -2.3689 43 1 9.6609 -13.2153 -2.9572 44 1 11.2459 -14.8469 -1.6467 45 1 12.3065 -10.9346 -0.5377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525232876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:59 Heat of formation + Delta-G solvation = 84.772576 kcal Electronic energy + Delta-G solvation = -25974.667847 eV Core-core repulsion = 22029.213019 eV Total energy + Delta-G solvation = -3945.454828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.87837 -42.30029 -40.93628 -37.59419 -36.40315 -35.64813 -35.49693 -33.28673 -32.39866 -31.01382 -30.34771 -29.00766 -27.99885 -25.39480 -24.69935 -23.00681 -22.52442 -22.22979 -22.12896 -21.63473 -21.23752 -19.28321 -19.14302 -18.38049 -18.09412 -17.18878 -17.06825 -16.45411 -16.26138 -15.95013 -15.79869 -15.57191 -15.48115 -15.18592 -14.92141 -14.82819 -14.37279 -14.17071 -14.07344 -13.89700 -13.70514 -13.55931 -13.22669 -12.93025 -12.65058 -12.57918 -12.31401 -12.02009 -11.94913 -11.69870 -11.65149 -11.19999 -11.00387 -10.90670 -10.68898 -10.52430 -10.23098 -9.80757 -9.41895 -9.14727 -8.76389 -6.55423 0.98375 1.06789 1.19504 1.51759 1.58172 1.63895 1.79671 1.93572 2.07637 2.25816 2.35900 2.49436 3.01822 3.12820 3.71358 3.79384 3.86269 3.92493 4.01945 4.14569 4.16663 4.27701 4.37455 4.55285 4.57090 4.57834 4.66766 4.67812 4.74477 4.78338 4.84776 4.85860 4.97544 5.08675 5.18202 5.27419 5.41176 5.46458 5.55585 5.81279 5.85825 5.86300 5.95613 6.27481 6.34799 6.42069 6.69873 7.08728 7.18635 7.20673 7.40724 8.58966 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.033461 B = 0.001423 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.594174 B =19675.423740 C =20133.924924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.046 0.954 9 C 0.260 3.740 10 N -0.345 5.345 11 C 0.055 3.945 12 C -0.291 4.291 13 C 0.287 3.713 14 N -0.636 5.636 15 C 0.709 3.291 16 O -0.605 6.605 17 N -0.720 5.720 18 C 0.136 3.864 19 C -0.114 4.114 20 C -0.126 4.126 21 C 0.104 3.896 22 N -0.457 5.457 23 C -0.050 4.050 24 C -0.065 4.065 25 N -0.547 5.547 26 C 0.173 3.827 27 N -0.347 5.347 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.017 0.983 31 H 0.200 0.800 32 H 0.168 0.832 33 H 0.422 0.578 34 H 0.417 0.583 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.200 0.800 44 H 0.174 0.826 45 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.435 -21.653 -8.048 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.322 4.322 13 C 0.031 3.969 14 N -0.288 5.288 15 C 0.408 3.592 16 O -0.483 6.483 17 N -0.377 5.377 18 C 0.013 3.987 19 C -0.152 4.152 20 C -0.165 4.165 21 C -0.017 4.017 22 N -0.139 5.139 23 C -0.184 4.184 24 C -0.212 4.212 25 N -0.266 5.266 26 C -0.110 4.110 27 N -0.178 5.178 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.185 0.815 33 H 0.260 0.740 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.217 0.783 44 H 0.191 0.809 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 21.257 -19.689 -7.525 29.936 hybrid contribution -0.530 -1.762 -0.469 1.899 sum 20.728 -21.451 -7.995 30.882 Atomic orbital electron populations 1.70948 1.07480 1.30170 1.47352 1.27277 0.96417 1.06063 0.92039 0.82874 0.74131 0.71083 0.77803 1.20042 1.19695 1.19973 1.22299 0.94721 0.92135 1.56877 0.93592 1.19414 0.86424 0.82811 0.97326 1.48545 1.24146 1.20191 1.19761 1.23161 1.00622 0.88843 0.96678 1.21706 1.02186 1.06520 1.01806 1.19098 0.90949 0.92806 0.94057 1.41388 1.30415 1.25433 1.31563 1.15862 0.80842 0.79644 0.82866 1.90845 1.65876 1.63104 1.28469 1.44873 1.32051 1.28171 1.32627 1.21322 0.95086 0.83915 0.98418 1.21608 0.96262 0.97651 0.99666 1.21765 0.97188 0.97694 0.99804 1.22158 0.96446 0.83704 0.99429 1.45807 1.26965 1.07656 1.33428 1.23178 1.05214 0.83597 1.06423 1.22648 0.97690 1.00711 1.00178 1.70242 1.27843 1.03260 1.25215 1.25517 0.92761 0.96657 0.96055 1.77252 1.04919 1.18152 1.17450 0.92989 0.92905 0.96551 0.78269 0.81480 0.74042 0.74619 0.92508 0.92465 0.88897 0.88821 0.91441 0.91563 0.87012 0.86570 0.78347 0.80885 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.65 21.45 0.29 -53.47 16 2 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 3 Si 1.12 49.19 29.90 68.60 2.05 51.24 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.62 -35.27 9.24 25.60 0.24 -35.04 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 9 C 0.26 13.34 5.57 85.64 0.48 13.82 16 10 N -0.34 -16.19 3.67 -351.84 -1.29 -17.48 16 11 C 0.06 2.18 11.44 83.52 0.96 3.13 16 12 C -0.29 -11.42 9.61 22.11 0.21 -11.21 16 13 C 0.29 11.32 8.11 133.31 1.08 12.40 16 14 N -0.64 -18.20 5.45 -321.24 -1.75 -19.95 16 15 C 0.71 18.61 8.53 179.06 1.53 20.14 16 16 O -0.60 -20.75 13.47 -4.00 -0.05 -20.80 16 17 N -0.72 -10.35 5.56 -478.54 -2.66 -13.01 16 18 C 0.14 1.54 5.67 86.38 0.49 2.03 16 19 C -0.11 -0.23 5.33 30.60 0.16 -0.06 16 20 C -0.13 -0.39 5.54 30.60 0.17 -0.22 16 21 C 0.10 0.13 6.15 86.38 0.53 0.66 16 22 N -0.46 -4.00 2.75 -529.07 -1.46 -5.45 16 23 C -0.05 -0.53 11.58 83.09 0.96 0.43 16 24 C -0.07 -1.05 11.87 83.52 0.99 -0.05 16 25 N -0.55 -10.86 11.25 -200.31 -2.25 -13.12 16 26 C 0.17 2.22 12.56 180.26 2.26 4.48 16 27 N -0.35 -16.04 12.42 -54.43 -0.68 -16.72 16 28 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 29 H 0.05 2.61 7.94 -2.39 -0.02 2.59 16 30 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 31 H 0.20 6.23 8.06 -2.91 -0.02 6.20 16 32 H 0.17 6.41 5.91 -2.91 -0.02 6.40 16 33 H 0.42 9.20 8.84 -92.71 -0.82 8.38 16 34 H 0.42 2.94 8.49 -92.71 -0.79 2.15 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.12 -0.27 8.14 -2.38 -0.02 -0.28 16 43 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -83.84 387.68 2.24 -81.59 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.48 Total: 17.21 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 10.52 Total: 9.95 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -9.80 Total: -139.19 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Total: -83.84 2.24 -81.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525232876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.364 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds