Wall clock time and date at job start Tue Mar 31 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.34944 * 126.03669 * 274.71979 * 4 2 1 6 6 C 1.35323 * 107.74482 * 179.83861 * 5 4 2 7 7 C 1.39873 * 107.91958 * 0.41777 * 6 5 4 8 8 C 1.50698 * 125.90051 * 179.71606 * 7 6 5 9 9 N 1.46506 * 109.46828 * 95.00347 * 8 7 6 10 10 C 1.34771 * 119.99627 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99589 * 180.02562 * 10 9 8 13 13 C 1.40197 * 119.99576 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97591 * 359.71403 * 13 12 10 15 15 C 1.35249 * 107.86983 * 179.82886 * 14 13 12 16 16 N 1.34967 * 107.85432 * 0.43260 * 15 14 13 17 17 C 1.46503 * 125.97298 * 179.70879 * 16 15 14 18 18 C 1.50701 * 109.46921 * 124.99687 * 17 16 15 19 19 H 1.08002 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00291 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47458 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47337 * 120.00141 * 22 20 18 25 25 H 1.48504 * 109.47307 * 240.00245 * 22 20 18 26 26 N 1.31208 * 125.97093 * 180.02562 * 13 12 10 27 27 N 1.30842 * 108.20046 * 359.74273 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07999 * 126.13049 * 359.97438 * 5 4 2 36 36 H 1.08003 * 126.04072 * 180.16194 * 6 5 4 37 37 H 1.08994 * 109.47184 * 215.00364 * 8 7 6 38 38 H 1.09002 * 109.46907 * 335.00782 * 8 7 6 39 39 H 0.96993 * 120.00008 * 0.02562 * 9 8 7 40 40 H 0.96993 * 120.00046 * 359.97438 * 12 10 9 41 41 H 1.08003 * 126.06890 * 0.02562 * 14 13 12 42 42 H 1.07999 * 126.07076 * 180.16065 * 15 14 13 43 43 H 1.08995 * 109.46771 * 244.99542 * 17 16 15 44 44 H 1.08994 * 109.47457 * 4.99739 * 17 16 15 45 45 H 0.96992 * 120.00208 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1984 -0.1380 2.4140 6 6 2.6563 -1.1053 3.2422 7 6 2.7687 -2.2873 2.5028 8 6 3.2478 -3.6160 3.0280 9 7 2.0952 -4.4284 3.4251 10 6 2.2833 -5.6646 3.9279 11 8 3.4096 -6.1055 4.0523 12 7 1.2228 -6.4122 4.2927 13 6 1.4185 -7.6980 4.8163 14 6 2.6571 -8.3303 5.0088 15 6 2.4212 -9.5537 5.5350 16 7 1.0854 -9.6984 5.6632 17 6 0.3941 -10.8787 6.1878 18 6 -0.5055 -10.4696 7.3255 19 1 -0.5575 -9.4339 7.6273 20 6 -1.2631 -11.4173 7.9805 21 7 -1.2003 -12.6785 7.6126 22 14 -2.3777 -10.9104 9.3911 23 1 -2.2676 -9.4453 9.6071 24 1 -3.7833 -11.2572 9.0607 25 1 -1.9687 -11.6254 10.6267 26 7 0.4758 -8.5229 5.2066 27 7 2.3866 -2.0398 1.2761 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0088 0.8912 2.6806 36 1 2.8968 -0.9849 4.2882 37 1 3.8067 -4.1345 2.2490 38 1 3.8930 -3.4541 3.8915 39 1 1.1967 -4.0766 3.3262 40 1 0.3244 -6.0604 4.1938 41 1 3.6266 -7.9127 4.7804 42 1 3.1686 -10.2865 5.8010 43 1 -0.2036 -11.3312 5.3966 44 1 1.1281 -11.6002 6.5465 45 1 -1.7329 -13.3452 8.0736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574711380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:21 Heat of formation + Delta-G solvation = 134.139808 kcal Electronic energy + Delta-G solvation = -26602.651735 eV Core-core repulsion = 22659.337631 eV Total energy + Delta-G solvation = -3943.314104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69614 -40.61403 -39.43892 -36.58480 -34.95209 -34.46345 -33.28367 -31.25720 -30.57549 -30.25458 -29.21207 -27.96501 -27.14112 -26.23823 -23.26587 -22.92991 -21.65129 -20.69255 -20.34849 -20.25902 -19.63181 -17.97800 -17.48297 -16.73534 -16.52442 -15.91837 -15.60494 -15.41215 -15.06015 -14.73190 -14.60770 -14.23455 -14.11944 -14.01145 -13.78177 -13.44718 -13.22511 -12.94194 -12.71513 -12.66530 -12.46943 -12.25973 -12.14944 -12.01955 -11.75572 -11.69855 -11.02519 -10.97873 -10.84864 -10.36194 -10.22512 -10.06740 -9.76874 -9.56841 -9.42807 -9.16934 -8.96342 -8.59884 -8.02606 -7.33971 -6.20506 -4.25182 1.44107 1.98728 2.14465 2.73283 2.78370 3.19237 3.24801 3.32208 3.39121 3.75501 3.87080 3.92390 4.22046 4.29756 4.33046 4.36601 4.42420 4.46370 4.79856 4.82568 5.01782 5.05783 5.14600 5.16204 5.31364 5.33281 5.45092 5.51936 5.53617 5.62682 5.75219 5.88269 6.22228 6.26859 6.35632 6.61507 6.63078 6.65929 6.93874 7.07285 7.17196 7.34332 7.57434 7.74358 7.88044 8.04539 8.13338 8.66577 8.73287 8.86264 9.40262 10.88190 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.001792 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.844597 B =15620.033597 C =16322.872919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.165 4.165 4 N -0.363 5.363 5 C 0.053 3.947 6 C -0.256 4.256 7 C 0.053 3.947 8 C 0.226 3.774 9 N -0.739 5.739 10 C 0.716 3.284 11 O -0.567 6.567 12 N -0.643 5.643 13 C 0.277 3.723 14 C -0.286 4.286 15 C 0.050 3.950 16 N -0.321 5.321 17 C 0.258 3.742 18 C -0.526 4.526 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 N -0.309 5.309 27 N -0.275 5.275 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.406 0.594 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 28.835 -14.396 32.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.223 4.223 4 N -0.146 5.146 5 C -0.093 4.093 6 C -0.285 4.285 7 C -0.113 4.113 8 C 0.100 3.900 9 N -0.396 5.396 10 C 0.415 3.585 11 O -0.443 6.443 12 N -0.293 5.293 13 C 0.023 3.977 14 C -0.317 4.317 15 C -0.099 4.099 16 N -0.103 5.103 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.088 0.912 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 N -0.140 5.140 27 N -0.098 5.098 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.232 0.768 40 H 0.241 0.759 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.933 27.572 -15.361 32.115 hybrid contribution -0.671 1.066 1.395 1.880 sum 5.262 28.638 -13.966 32.293 Atomic orbital electron populations 1.22245 0.93381 1.03561 1.03163 1.21311 0.94967 0.92738 0.85857 1.22203 1.02392 0.93910 1.03771 1.48913 1.49944 1.07106 1.08683 1.22466 1.01227 0.99991 0.85604 1.21458 1.13288 0.92207 1.01576 1.22242 1.01037 0.96502 0.91518 1.19305 0.86989 0.83850 0.99847 1.44925 1.10060 1.15154 1.69465 1.15532 0.84299 0.80288 0.78355 1.90872 1.21916 1.71445 1.60026 1.41357 1.08991 1.13388 1.65561 1.18776 0.93232 0.85775 0.99944 1.21520 0.98739 0.95601 1.15860 1.22552 0.87176 0.98754 1.01466 1.49037 1.03758 1.12374 1.45145 1.19727 0.93202 0.78204 0.94799 1.21318 1.24583 0.95368 1.15211 0.91235 1.24949 0.96823 0.94673 0.97712 1.69930 1.41063 1.00879 1.41545 0.86279 0.80052 0.78878 0.81326 1.19576 1.20756 1.20789 1.77318 1.19631 0.94327 1.22707 1.77384 1.19492 0.93144 1.19753 0.91826 0.91428 0.90354 0.87864 0.91458 0.91391 0.89841 0.81063 0.83203 0.89945 0.89241 0.76815 0.75895 0.82131 0.81556 0.93779 0.92541 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 9.52 37.16 0.35 -0.34 16 2 C 0.15 0.75 3.93 -67.93 -0.27 0.49 16 3 C -0.16 -0.42 8.83 37.16 0.33 -0.10 16 4 N -0.36 -2.84 3.53 -54.86 -0.19 -3.03 16 5 C 0.05 0.35 10.59 -17.22 -0.18 0.17 16 6 C -0.26 -2.05 10.74 -40.01 -0.43 -2.48 16 7 C 0.05 0.52 6.59 -82.40 -0.54 -0.02 16 8 C 0.23 2.35 6.23 -5.19 -0.03 2.31 16 9 N -0.74 -8.37 5.55 -66.41 -0.37 -8.74 16 10 C 0.72 11.06 8.53 -86.92 -0.74 10.32 16 11 O -0.57 -10.52 13.47 5.28 0.07 -10.44 16 12 N -0.64 -10.50 5.46 -15.51 -0.08 -10.58 16 13 C 0.28 5.77 8.11 -154.36 -1.25 4.52 16 14 C -0.29 -5.89 9.61 -39.83 -0.38 -6.27 16 15 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 16 N -0.32 -7.65 3.67 -62.56 -0.23 -7.88 16 17 C 0.26 6.68 6.26 -5.19 -0.03 6.65 16 18 C -0.53 -14.86 9.24 -34.44 -0.32 -15.18 16 19 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 22 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 N -0.31 -7.30 12.42 31.44 0.39 -6.91 16 27 N -0.27 -2.92 12.58 33.67 0.42 -2.50 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.13 7.15 -51.93 -0.37 -0.24 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.17 0.58 7.25 -52.49 -0.38 0.20 16 36 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 3.74 8.48 -40.82 -0.35 3.39 16 40 H 0.41 5.46 8.84 -40.82 -0.36 5.10 16 41 H 0.16 3.24 5.91 -52.48 -0.31 2.93 16 42 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 43 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -35.19 387.09 -8.62 -43.81 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.38 Total: 6.24 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.79 Total: 2.51 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.67 Total: -64.52 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.19 -8.62 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574711380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.945 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds