Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.34944 * 126.03669 * 274.71979 * 4 2 1 6 6 C 1.35323 * 107.74482 * 179.83861 * 5 4 2 7 7 C 1.39873 * 107.91958 * 0.41777 * 6 5 4 8 8 C 1.50698 * 125.90051 * 179.71606 * 7 6 5 9 9 N 1.46506 * 109.46828 * 95.00347 * 8 7 6 10 10 C 1.34771 * 119.99627 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99589 * 180.02562 * 10 9 8 13 13 C 1.40197 * 119.99576 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97591 * 359.71403 * 13 12 10 15 15 C 1.35249 * 107.86983 * 179.82886 * 14 13 12 16 16 N 1.34967 * 107.85432 * 0.43260 * 15 14 13 17 17 C 1.46503 * 125.97298 * 179.70879 * 16 15 14 18 18 C 1.50701 * 109.46921 * 124.99687 * 17 16 15 19 19 H 1.08002 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00291 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47458 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47337 * 120.00141 * 22 20 18 25 25 H 1.48504 * 109.47307 * 240.00245 * 22 20 18 26 26 N 1.31208 * 125.97093 * 180.02562 * 13 12 10 27 27 N 1.30842 * 108.20046 * 359.74273 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07999 * 126.13049 * 359.97438 * 5 4 2 36 36 H 1.08003 * 126.04072 * 180.16194 * 6 5 4 37 37 H 1.08994 * 109.47184 * 215.00364 * 8 7 6 38 38 H 1.09002 * 109.46907 * 335.00782 * 8 7 6 39 39 H 0.96993 * 120.00008 * 0.02562 * 9 8 7 40 40 H 0.96993 * 120.00046 * 359.97438 * 12 10 9 41 41 H 1.08003 * 126.06890 * 0.02562 * 14 13 12 42 42 H 1.07999 * 126.07076 * 180.16065 * 15 14 13 43 43 H 1.08995 * 109.46771 * 244.99542 * 17 16 15 44 44 H 1.08994 * 109.47457 * 4.99739 * 17 16 15 45 45 H 0.96992 * 120.00208 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1984 -0.1380 2.4140 6 6 2.6563 -1.1053 3.2422 7 6 2.7687 -2.2873 2.5028 8 6 3.2478 -3.6160 3.0280 9 7 2.0952 -4.4284 3.4251 10 6 2.2833 -5.6646 3.9279 11 8 3.4096 -6.1055 4.0523 12 7 1.2228 -6.4122 4.2927 13 6 1.4185 -7.6980 4.8163 14 6 2.6571 -8.3303 5.0088 15 6 2.4212 -9.5537 5.5350 16 7 1.0854 -9.6984 5.6632 17 6 0.3941 -10.8787 6.1878 18 6 -0.5055 -10.4696 7.3255 19 1 -0.5575 -9.4339 7.6273 20 6 -1.2631 -11.4173 7.9805 21 7 -1.2003 -12.6785 7.6126 22 14 -2.3777 -10.9104 9.3911 23 1 -2.2676 -9.4453 9.6071 24 1 -3.7833 -11.2572 9.0607 25 1 -1.9687 -11.6254 10.6267 26 7 0.4758 -8.5229 5.2066 27 7 2.3866 -2.0398 1.2761 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0088 0.8912 2.6806 36 1 2.8968 -0.9849 4.2882 37 1 3.8067 -4.1345 2.2490 38 1 3.8930 -3.4541 3.8915 39 1 1.1967 -4.0766 3.3262 40 1 0.3244 -6.0604 4.1938 41 1 3.6266 -7.9127 4.7804 42 1 3.1686 -10.2865 5.8010 43 1 -0.2036 -11.3312 5.3966 44 1 1.1281 -11.6002 6.5465 45 1 -1.7329 -13.3452 8.0736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574711380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = 110.466007 kcal Electronic energy + Delta-G solvation = -26603.678308 eV Core-core repulsion = 22659.337631 eV Total energy + Delta-G solvation = -3944.340677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.34094 -42.14742 -40.81954 -37.17467 -36.24533 -35.63702 -35.22956 -32.81201 -31.53670 -30.94341 -30.83695 -28.67382 -28.22115 -27.50716 -24.97348 -23.65956 -23.00276 -21.93212 -21.51695 -21.07208 -20.74510 -19.18403 -18.67907 -18.25852 -17.93869 -17.24980 -16.82203 -16.50201 -16.14405 -15.85914 -15.70677 -15.52609 -15.32965 -14.92676 -14.55622 -14.45491 -14.28321 -14.02930 -13.77948 -13.77537 -13.62405 -13.30015 -13.07431 -13.01107 -12.91720 -12.71853 -12.34992 -12.29249 -12.09120 -12.03972 -11.65153 -11.60696 -11.37556 -11.15836 -10.71000 -10.36720 -10.24552 -9.70055 -9.55231 -9.03181 -8.31400 -6.45490 0.73862 1.10321 1.17838 1.38101 1.39370 1.51650 1.52835 1.72116 1.74571 2.25132 2.38813 2.42480 2.99964 3.22352 3.40059 3.70334 3.91682 3.93658 4.00207 4.10597 4.23664 4.30489 4.54416 4.60645 4.64865 4.77172 4.79298 4.81852 4.83950 4.92020 4.93251 4.97839 5.04106 5.10323 5.12773 5.18215 5.22922 5.39734 5.58608 5.61730 5.76278 5.88164 5.99360 6.15442 6.32094 6.65351 6.71081 6.74926 7.15567 7.24430 7.41027 8.76219 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.001792 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.844597 B =15620.033597 C =16322.872919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 C -0.158 4.158 4 N -0.362 5.362 5 C 0.063 3.937 6 C -0.270 4.270 7 C 0.043 3.957 8 C 0.229 3.771 9 N -0.717 5.717 10 C 0.717 3.283 11 O -0.597 6.597 12 N -0.636 5.636 13 C 0.285 3.715 14 C -0.292 4.292 15 C 0.057 3.943 16 N -0.345 5.345 17 C 0.272 3.728 18 C -0.547 4.547 19 H 0.052 0.948 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.270 1.270 26 N -0.349 5.349 27 N -0.315 5.315 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.208 0.792 36 H 0.163 0.837 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.410 0.590 40 H 0.420 0.580 41 H 0.168 0.832 42 H 0.202 0.798 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 31.418 -14.131 35.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 C -0.216 4.216 4 N -0.146 5.146 5 C -0.083 4.083 6 C -0.299 4.299 7 C -0.122 4.122 8 C 0.103 3.897 9 N -0.374 5.374 10 C 0.416 3.584 11 O -0.475 6.475 12 N -0.288 5.288 13 C 0.029 3.971 14 C -0.323 4.323 15 C -0.092 4.092 16 N -0.127 5.127 17 C 0.153 3.847 18 C -0.585 4.585 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.797 3.203 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.195 1.195 26 N -0.180 5.180 27 N -0.139 5.139 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.225 0.775 36 H 0.181 0.819 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.246 0.754 40 H 0.257 0.743 41 H 0.185 0.815 42 H 0.219 0.781 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.682 30.202 -15.133 34.256 hybrid contribution -0.541 0.408 1.182 1.363 sum 5.140 30.610 -13.951 34.030 Atomic orbital electron populations 1.22208 0.92707 1.02418 1.04433 1.21600 0.95480 0.93858 0.84693 1.22188 1.01883 0.92159 1.05323 1.49200 1.49200 1.06298 1.09890 1.23032 0.99398 1.01228 0.84691 1.21695 1.13919 0.91852 1.02440 1.22131 1.01720 0.96537 0.91808 1.19311 0.86482 0.84110 0.99758 1.44796 1.11217 1.13641 1.67775 1.15633 0.83509 0.81029 0.78228 1.90842 1.22992 1.72344 1.61324 1.41350 1.10162 1.12050 1.65230 1.19070 0.92920 0.86749 0.98334 1.21698 0.98930 0.95701 1.16012 1.23162 0.86551 0.99474 0.99962 1.48812 1.04727 1.12277 1.46888 1.19340 0.92845 0.79071 0.93414 1.21446 1.25899 0.94719 1.16409 0.92951 1.25747 0.97920 0.94597 0.99997 1.70004 1.41694 1.01703 1.42565 0.85285 0.78302 0.78245 0.78475 1.19927 1.19886 1.19474 1.77239 1.21011 0.95037 1.24716 1.77306 1.20945 0.95234 1.20421 0.91327 0.93718 0.88296 0.88721 0.90185 0.92107 0.88024 0.77502 0.81941 0.91107 0.88569 0.75446 0.74337 0.81466 0.78140 0.96112 0.92272 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.52 71.98 0.69 -0.40 16 2 C 0.14 1.21 3.93 44.99 0.18 1.39 16 3 C -0.16 -0.40 8.83 71.98 0.64 0.24 16 4 N -0.36 -5.19 3.53 -327.49 -1.16 -6.34 16 5 C 0.06 0.69 10.59 83.54 0.88 1.57 16 6 C -0.27 -3.89 10.74 21.99 0.24 -3.66 16 7 C 0.04 0.82 6.59 43.10 0.28 1.10 16 8 C 0.23 4.69 6.23 85.63 0.53 5.22 16 9 N -0.72 -15.80 5.55 -482.29 -2.68 -18.48 16 10 C 0.72 21.80 8.53 179.05 1.53 23.32 16 11 O -0.60 -21.97 13.47 -4.01 -0.05 -22.03 16 12 N -0.64 -20.55 5.46 -321.23 -1.75 -22.31 16 13 C 0.28 11.89 8.11 133.31 1.08 12.97 16 14 C -0.29 -11.94 9.61 22.11 0.21 -11.73 16 15 C 0.06 2.32 11.44 83.52 0.96 3.28 16 16 N -0.34 -16.67 3.67 -351.84 -1.29 -17.96 16 17 C 0.27 14.41 6.26 85.63 0.54 14.95 16 18 C -0.55 -31.36 9.24 25.60 0.24 -31.13 16 19 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 20 C 0.02 0.98 5.46 84.65 0.46 1.45 16 21 N -0.92 -52.74 13.29 21.45 0.28 -52.45 16 22 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 N -0.35 -16.76 12.42 -54.44 -0.68 -17.44 16 27 N -0.32 -6.61 12.58 -47.38 -0.60 -7.21 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.02 7.15 -2.39 -0.02 0.00 16 33 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.21 0.61 7.25 -2.91 -0.02 0.59 16 36 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.41 7.33 8.48 -92.71 -0.79 6.54 16 40 H 0.42 11.07 8.84 -92.71 -0.82 10.25 16 41 H 0.17 6.66 5.91 -2.91 -0.02 6.64 16 42 H 0.20 6.47 8.06 -2.91 -0.02 6.45 16 43 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 3.05 8.07 -2.39 -0.02 3.03 16 45 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.54 387.09 1.98 -74.56 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.57 Total: 24.91 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 8.45 Total: 18.58 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -7.86 Total: -142.20 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -76.54 1.98 -74.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574711380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.029 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds