Wall clock time and date at job start Tue Mar 31 2020 18:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 N 1.46501 * 109.47302 * 120.00516 * 2 1 3 5 5 C 1.46504 * 119.99389 * 304.23948 * 4 2 1 6 6 C 1.50702 * 109.46932 * 269.99932 * 5 4 2 7 7 H 1.07996 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99815 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47012 * 89.99553 * 10 8 6 12 12 H 1.48497 * 109.47242 * 209.99971 * 10 8 6 13 13 H 1.48499 * 109.46709 * 329.99782 * 10 8 6 14 14 C 1.34771 * 119.99946 * 124.23876 * 4 2 1 15 15 O 1.21283 * 119.99786 * 185.39369 * 14 4 2 16 16 C 1.50697 * 120.00365 * 5.39839 * 14 4 2 17 17 C 1.52995 * 109.47070 * 174.86507 * 16 14 4 18 18 N 1.46503 * 109.47027 * 180.02562 * 17 16 14 19 19 C 1.36318 * 126.27619 * 265.02414 * 18 17 16 20 20 N 1.30140 * 109.97844 * 180.02562 * 19 18 17 21 21 C 1.35462 * 109.44300 * 359.97438 * 20 19 18 22 22 C 1.37197 * 126.28343 * 85.02603 * 18 17 16 23 23 N 1.32896 * 134.91835 * 359.97316 * 22 18 17 24 24 C 1.31645 * 120.64131 * 180.02562 * 23 22 18 25 25 N 1.32044 * 122.46188 * 359.97438 * 24 23 22 26 26 C 1.32906 * 121.19493 * 0.02562 * 25 24 23 27 27 N 1.38382 * 120.77417 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47259 * 295.64124 * 1 2 3 29 29 H 1.08999 * 109.47481 * 55.64322 * 1 2 3 30 30 H 1.09000 * 109.47131 * 175.64097 * 1 2 3 31 31 H 1.09002 * 109.47080 * 240.00272 * 2 1 3 32 32 H 1.09004 * 109.47607 * 184.58666 * 3 2 1 33 33 H 1.09007 * 109.47221 * 304.58496 * 3 2 1 34 34 H 1.09000 * 109.47454 * 64.58637 * 3 2 1 35 35 H 1.08989 * 109.47455 * 30.00230 * 5 4 2 36 36 H 1.09000 * 109.46623 * 150.00251 * 5 4 2 37 37 H 0.96999 * 120.00193 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.46883 * 54.86875 * 16 14 4 39 39 H 1.08997 * 109.47055 * 294.86896 * 16 14 4 40 40 H 1.09001 * 109.47622 * 60.00130 * 17 16 14 41 41 H 1.09003 * 109.47434 * 299.99705 * 17 16 14 42 42 H 1.08008 * 125.01058 * 0.02562 * 19 18 17 43 43 H 1.08001 * 118.76593 * 180.28267 * 24 23 22 44 44 H 0.96994 * 120.00113 * 359.97438 * 27 26 25 45 45 H 0.97004 * 120.00109 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5894 -0.2467 2.5247 6 6 2.5498 0.7937 3.0409 7 1 3.3948 1.0944 2.4394 8 6 2.3496 1.3616 4.2812 9 7 3.1879 2.2691 4.7319 10 14 0.8883 0.8411 5.3220 11 1 1.2775 -0.3038 6.1841 12 1 0.4573 1.9783 6.1741 13 1 -0.2313 0.4348 4.4352 14 6 2.8621 -1.7345 1.0742 15 8 3.1894 -2.3676 2.0555 16 6 3.3991 -2.1150 -0.2815 17 6 4.4243 -3.2401 -0.1265 18 7 4.9468 -3.6096 -1.4444 19 6 4.4924 -4.6208 -2.2376 20 7 5.1848 -4.6677 -3.3385 21 6 6.1245 -3.6922 -3.3221 22 6 5.9831 -3.0015 -2.1066 23 7 6.7972 -1.9846 -1.8430 24 6 7.7242 -1.6261 -2.7062 25 7 7.8952 -2.2446 -3.8602 26 6 7.1288 -3.2723 -4.2107 27 7 7.3153 -3.9137 -5.4226 28 1 -0.3633 0.4447 0.9264 29 1 -0.3634 0.5799 -0.8483 30 1 -0.3633 -1.0247 -0.0781 31 1 1.8933 -0.5138 -0.8900 32 1 3.1269 1.4436 -0.0822 33 1 1.6111 1.9795 -0.8461 34 1 1.7453 1.9321 0.9282 35 1 0.5897 0.1824 2.4592 36 1 1.5756 -1.0979 3.2053 37 1 3.0473 2.6685 5.6046 38 1 3.8767 -1.2487 -0.7393 39 1 2.5795 -2.4549 -0.9146 40 1 3.9468 -4.1064 0.3313 41 1 5.2440 -2.9001 0.5066 42 1 3.6778 -5.2850 -1.9891 43 1 8.3724 -0.7983 -2.4590 44 1 8.0116 -3.6142 -6.0278 45 1 6.7492 -4.6625 -5.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597041514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:19 Heat of formation + Delta-G solvation = 68.001454 kcal Electronic energy + Delta-G solvation = -28496.870123 eV Core-core repulsion = 24550.688045 eV Total energy + Delta-G solvation = -3946.182078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66634 -39.65243 -39.25037 -36.31864 -35.93510 -34.61060 -32.79655 -32.13733 -31.08916 -30.73132 -29.40788 -28.03348 -26.84374 -24.92247 -24.37476 -23.49003 -22.20205 -21.38858 -20.80412 -18.73968 -18.51990 -18.16394 -17.18218 -16.93467 -16.75283 -16.19857 -16.07565 -15.33528 -15.29690 -14.90202 -14.43710 -14.24488 -14.03923 -13.91801 -13.64136 -13.50227 -13.11114 -12.65030 -12.49307 -12.40680 -12.16457 -11.91783 -11.76517 -11.67752 -11.46220 -11.30336 -11.00327 -10.92269 -10.56587 -10.55555 -10.40100 -10.14198 -10.11495 -9.53042 -9.43983 -9.16919 -9.13451 -8.60207 -8.09493 -7.79860 -6.10298 -4.08516 0.73731 1.24367 2.14838 2.55427 3.07391 3.17128 3.26303 3.32221 3.34502 3.66248 3.82534 3.85545 4.01608 4.30762 4.37194 4.61044 4.73076 4.73549 4.88391 4.92833 5.11824 5.22479 5.27949 5.42040 5.47274 5.53897 5.61561 5.78573 5.88151 5.91522 6.03516 6.18639 6.24912 6.28435 6.45683 6.52499 6.70409 6.71949 6.91392 6.92358 6.97109 7.27635 7.40452 7.49333 7.58585 8.15842 8.19812 8.44369 8.80864 8.94720 9.49678 11.02696 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002810 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.164995 B = 9962.856302 C =10214.008479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.162 4.162 4 N -0.584 5.584 5 C 0.214 3.786 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.517 3.483 15 O -0.544 6.544 16 C -0.156 4.156 17 C 0.128 3.872 18 N -0.468 5.468 19 C 0.252 3.748 20 N -0.469 5.469 21 C -0.113 4.113 22 C 0.303 3.697 23 N -0.550 5.550 24 C 0.361 3.639 25 N -0.595 5.595 26 C 0.505 3.495 27 N -0.822 5.822 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.222 0.778 43 H 0.204 0.796 44 H 0.408 0.592 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -11.456 -19.735 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.316 5.316 5 C 0.093 3.907 6 C -0.564 4.564 7 H 0.096 0.904 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.303 3.697 15 O -0.422 6.422 16 C -0.197 4.197 17 C 0.006 3.994 18 N -0.159 5.159 19 C -0.035 4.035 20 N -0.188 5.188 21 C -0.240 4.240 22 C 0.061 3.939 23 N -0.274 5.274 24 C 0.069 3.931 25 N -0.325 5.325 26 C 0.251 3.749 27 N -0.365 5.365 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.239 0.761 43 H 0.221 0.779 44 H 0.238 0.762 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.963 -11.460 -19.267 22.504 hybrid contribution -1.130 -0.275 0.809 1.417 sum 0.832 -11.735 -18.459 21.889 Atomic orbital electron populations 1.22167 0.95387 1.01658 1.02874 1.21034 0.94165 0.94415 0.87456 1.22197 1.01231 0.95345 1.03212 1.47988 1.45317 1.30022 1.08232 1.19676 0.95810 0.95909 0.79284 1.21330 1.11490 1.20725 1.02811 0.90444 1.24849 0.96192 0.94708 0.97229 1.69892 1.36605 1.27629 1.19295 0.86903 0.83433 0.78568 0.81087 1.19963 1.21130 1.19143 1.19909 0.79424 0.80840 0.89549 1.90684 1.58898 1.52808 1.39830 1.22006 0.99499 1.00225 0.97938 1.21709 0.98700 0.99441 0.79500 1.45333 1.26048 1.26649 1.17846 1.25378 1.00032 0.91689 0.86354 1.70200 1.06781 1.20867 1.20926 1.19689 1.03713 1.02308 0.98278 1.18785 0.91291 0.93312 0.90500 1.67324 1.08080 1.16130 1.35874 1.24488 0.90580 0.95252 0.82733 1.68038 1.30481 1.11706 1.22261 1.17773 0.85374 0.86811 0.84968 1.42171 1.40366 1.36808 1.17144 0.91260 0.91900 0.92908 0.90719 0.92720 0.93142 0.89429 0.94946 0.94546 0.92574 0.88447 0.88967 0.87357 0.87549 0.76149 0.77938 0.76166 0.75175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.19 37.16 0.34 -1.84 16 2 C 0.13 2.05 3.12 -67.93 -0.21 1.83 16 3 C -0.16 -2.66 8.74 37.15 0.32 -2.34 16 4 N -0.58 -11.32 2.39 -167.48 -0.40 -11.72 16 5 C 0.21 4.98 3.80 -5.19 -0.02 4.96 16 6 C -0.53 -14.42 8.27 -34.44 -0.28 -14.71 16 7 H 0.08 2.34 7.84 -52.49 -0.41 1.93 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 10 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.52 9.69 7.65 -10.99 -0.08 9.60 16 15 O -0.54 -12.21 15.54 5.55 0.09 -12.12 16 16 C -0.16 -2.11 4.35 -27.89 -0.12 -2.23 16 17 C 0.13 1.61 5.46 -4.04 -0.02 1.59 16 18 N -0.47 -5.64 2.79 -117.62 -0.33 -5.97 16 19 C 0.25 2.50 12.51 -89.50 -1.12 1.38 16 20 N -0.47 -5.52 11.28 -11.85 -0.13 -5.65 16 21 C -0.11 -1.47 7.17 -84.54 -0.61 -2.08 16 22 C 0.30 4.27 8.05 -155.80 -1.25 3.02 16 23 N -0.55 -7.99 10.47 -13.90 -0.15 -8.14 16 24 C 0.36 4.39 12.25 -92.07 -1.13 3.26 16 25 N -0.59 -7.16 10.45 -13.61 -0.14 -7.31 16 26 C 0.50 5.91 7.87 -154.66 -1.22 4.69 16 27 N -0.82 -6.37 9.05 31.37 0.28 -6.09 16 28 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.96 5.85 -51.93 -0.30 0.66 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.73 6.60 -51.93 -0.34 1.39 16 35 H 0.03 0.73 5.19 -51.94 -0.27 0.46 16 36 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 1.40 7.85 -51.93 -0.41 0.99 16 39 H 0.09 1.00 7.73 -51.93 -0.40 0.60 16 40 H 0.11 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.22 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.20 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.41 2.32 8.95 -40.82 -0.37 1.96 16 45 H 0.42 2.70 8.85 -40.82 -0.36 2.34 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -35.82 373.20 -10.64 -46.46 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.09 Total: 5.66 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -5.50 Total: 9.11 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.09 Total: -71.18 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.82 -10.64 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.461 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds