Wall clock time and date at job start Tue Mar 31 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 N 1.46501 * 109.47302 * 120.00516 * 2 1 3 5 5 C 1.46504 * 119.99389 * 304.23948 * 4 2 1 6 6 C 1.50702 * 109.46932 * 269.99932 * 5 4 2 7 7 H 1.07996 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99815 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47012 * 89.99553 * 10 8 6 12 12 H 1.48497 * 109.47242 * 209.99971 * 10 8 6 13 13 H 1.48499 * 109.46709 * 329.99782 * 10 8 6 14 14 C 1.34771 * 119.99946 * 124.23876 * 4 2 1 15 15 O 1.21283 * 119.99786 * 185.39369 * 14 4 2 16 16 C 1.50697 * 120.00365 * 5.39839 * 14 4 2 17 17 C 1.52995 * 109.47070 * 174.86507 * 16 14 4 18 18 N 1.46503 * 109.47027 * 180.02562 * 17 16 14 19 19 C 1.36318 * 126.27619 * 265.02414 * 18 17 16 20 20 N 1.30140 * 109.97844 * 180.02562 * 19 18 17 21 21 C 1.35462 * 109.44300 * 359.97438 * 20 19 18 22 22 C 1.37197 * 126.28343 * 85.02603 * 18 17 16 23 23 N 1.32896 * 134.91835 * 359.97316 * 22 18 17 24 24 C 1.31645 * 120.64131 * 180.02562 * 23 22 18 25 25 N 1.32044 * 122.46188 * 359.97438 * 24 23 22 26 26 C 1.32906 * 121.19493 * 0.02562 * 25 24 23 27 27 N 1.38382 * 120.77417 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47259 * 295.64124 * 1 2 3 29 29 H 1.08999 * 109.47481 * 55.64322 * 1 2 3 30 30 H 1.09000 * 109.47131 * 175.64097 * 1 2 3 31 31 H 1.09002 * 109.47080 * 240.00272 * 2 1 3 32 32 H 1.09004 * 109.47607 * 184.58666 * 3 2 1 33 33 H 1.09007 * 109.47221 * 304.58496 * 3 2 1 34 34 H 1.09000 * 109.47454 * 64.58637 * 3 2 1 35 35 H 1.08989 * 109.47455 * 30.00230 * 5 4 2 36 36 H 1.09000 * 109.46623 * 150.00251 * 5 4 2 37 37 H 0.96999 * 120.00193 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.46883 * 54.86875 * 16 14 4 39 39 H 1.08997 * 109.47055 * 294.86896 * 16 14 4 40 40 H 1.09001 * 109.47622 * 60.00130 * 17 16 14 41 41 H 1.09003 * 109.47434 * 299.99705 * 17 16 14 42 42 H 1.08008 * 125.01058 * 0.02562 * 19 18 17 43 43 H 1.08001 * 118.76593 * 180.28267 * 24 23 22 44 44 H 0.96994 * 120.00113 * 359.97438 * 27 26 25 45 45 H 0.97004 * 120.00109 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5894 -0.2467 2.5247 6 6 2.5498 0.7937 3.0409 7 1 3.3948 1.0944 2.4394 8 6 2.3496 1.3616 4.2812 9 7 3.1879 2.2691 4.7319 10 14 0.8883 0.8411 5.3220 11 1 1.2775 -0.3038 6.1841 12 1 0.4573 1.9783 6.1741 13 1 -0.2313 0.4348 4.4352 14 6 2.8621 -1.7345 1.0742 15 8 3.1894 -2.3676 2.0555 16 6 3.3991 -2.1150 -0.2815 17 6 4.4243 -3.2401 -0.1265 18 7 4.9468 -3.6096 -1.4444 19 6 4.4924 -4.6208 -2.2376 20 7 5.1848 -4.6677 -3.3385 21 6 6.1245 -3.6922 -3.3221 22 6 5.9831 -3.0015 -2.1066 23 7 6.7972 -1.9846 -1.8430 24 6 7.7242 -1.6261 -2.7062 25 7 7.8952 -2.2446 -3.8602 26 6 7.1288 -3.2723 -4.2107 27 7 7.3153 -3.9137 -5.4226 28 1 -0.3633 0.4447 0.9264 29 1 -0.3634 0.5799 -0.8483 30 1 -0.3633 -1.0247 -0.0781 31 1 1.8933 -0.5138 -0.8900 32 1 3.1269 1.4436 -0.0822 33 1 1.6111 1.9795 -0.8461 34 1 1.7453 1.9321 0.9282 35 1 0.5897 0.1824 2.4592 36 1 1.5756 -1.0979 3.2053 37 1 3.0473 2.6685 5.6046 38 1 3.8767 -1.2487 -0.7393 39 1 2.5795 -2.4549 -0.9146 40 1 3.9468 -4.1064 0.3313 41 1 5.2440 -2.9001 0.5066 42 1 3.6778 -5.2850 -1.9891 43 1 8.3724 -0.7983 -2.4590 44 1 8.0116 -3.6142 -6.0278 45 1 6.7492 -4.6625 -5.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597041514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:18 Heat of formation + Delta-G solvation = 44.516386 kcal Electronic energy + Delta-G solvation = -28497.888512 eV Core-core repulsion = 24550.688045 eV Total energy + Delta-G solvation = -3947.200467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.54131 -41.03244 -40.22997 -37.75192 -36.81107 -35.62492 -34.84052 -33.00929 -32.61557 -31.92639 -30.25581 -29.76804 -28.04983 -26.18034 -25.21407 -24.54603 -23.86296 -22.70625 -21.70091 -19.62431 -19.60980 -19.40824 -19.05718 -18.34954 -17.65505 -17.27039 -16.98315 -16.80454 -16.64805 -16.04614 -15.70348 -15.32584 -15.02731 -14.96945 -14.91813 -14.73669 -14.57208 -14.34832 -13.79977 -13.64767 -13.50682 -13.26630 -13.07558 -12.89438 -12.73090 -12.59389 -12.37027 -12.36276 -12.27261 -11.92474 -11.78329 -11.53311 -11.45154 -10.97844 -10.79074 -10.72246 -10.33037 -10.10222 -9.43344 -8.93194 -8.30043 -6.33016 -0.11940 0.30800 1.22989 1.32874 1.36464 1.44220 1.68769 1.74123 2.28331 2.32393 2.32779 2.89926 3.00532 3.04102 3.15431 3.39015 3.58715 3.71113 3.76030 3.92389 3.95912 4.17035 4.22343 4.28270 4.37814 4.42151 4.67533 4.72815 4.80169 4.84717 4.88112 4.94499 4.97044 5.01385 5.05676 5.38749 5.40842 5.47936 5.56242 5.66239 5.71350 5.93458 6.16734 6.27461 6.63010 6.66686 6.69924 6.73704 7.22706 7.32275 7.36931 8.86620 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002810 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.164995 B = 9962.856302 C =10214.008479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.592 5.592 5 C 0.224 3.776 6 C -0.522 4.522 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.941 3.059 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.238 1.238 14 C 0.509 3.491 15 O -0.588 6.588 16 C -0.137 4.137 17 C 0.138 3.862 18 N -0.469 5.469 19 C 0.265 3.735 20 N -0.481 5.481 21 C -0.125 4.125 22 C 0.273 3.727 23 N -0.584 5.584 24 C 0.355 3.645 25 N -0.601 5.601 26 C 0.495 3.505 27 N -0.802 5.802 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.073 0.927 42 H 0.269 0.731 43 H 0.227 0.773 44 H 0.419 0.581 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -13.365 -22.081 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.101 3.899 6 C -0.560 4.560 7 H 0.050 0.950 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.764 3.236 11 H -0.203 1.203 12 H -0.205 1.205 13 H -0.161 1.161 14 C 0.297 3.703 15 O -0.469 6.469 16 C -0.177 4.177 17 C 0.016 3.984 18 N -0.160 5.160 19 C -0.021 4.021 20 N -0.199 5.199 21 C -0.252 4.252 22 C 0.033 3.967 23 N -0.310 5.310 24 C 0.064 3.936 25 N -0.331 5.331 26 C 0.240 3.760 27 N -0.345 5.345 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.284 0.716 43 H 0.243 0.757 44 H 0.251 0.749 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.441 -13.388 -21.714 25.514 hybrid contribution -0.263 0.326 1.421 1.481 sum -0.704 -13.062 -20.294 24.144 Atomic orbital electron populations 1.22138 0.93204 1.03131 1.03052 1.21380 0.95887 0.93285 0.86883 1.22126 1.00042 0.96706 1.02607 1.48095 1.45677 1.30493 1.08025 1.19298 0.95412 0.93824 0.81316 1.21525 1.10800 1.21326 1.02372 0.94966 1.25797 0.99485 0.94710 0.98787 1.70053 1.39149 1.29497 1.20027 0.85810 0.80368 0.78009 0.79365 1.20270 1.20469 1.16065 1.20789 0.78381 0.80019 0.91104 1.90656 1.60079 1.54335 1.41870 1.21877 1.00687 1.00335 0.94820 1.21506 0.97345 0.99904 0.79638 1.45361 1.25916 1.27118 1.17640 1.26391 0.99916 0.90732 0.85053 1.70228 1.07053 1.20746 1.21907 1.19884 1.04390 1.02670 0.98227 1.19145 0.92157 0.93919 0.91519 1.67335 1.09285 1.17292 1.37071 1.25011 0.90362 0.95647 0.82582 1.68115 1.30720 1.12092 1.22212 1.18022 0.85188 0.86905 0.85910 1.42133 1.40301 1.36218 1.15886 0.93463 0.88845 0.91240 0.87257 0.94933 0.89477 0.93423 0.93200 0.96206 0.92501 0.89231 0.84843 0.85151 0.90843 0.71564 0.75660 0.74863 0.74263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.19 71.98 0.66 -3.00 16 2 C 0.13 3.65 3.12 44.99 0.14 3.79 16 3 C -0.16 -5.09 8.74 71.98 0.63 -4.46 16 4 N -0.59 -22.60 2.39 -802.16 -1.92 -24.52 16 5 C 0.22 10.47 3.80 85.63 0.33 10.79 16 6 C -0.52 -29.81 8.27 25.60 0.21 -29.60 16 7 H 0.03 2.07 7.84 -2.91 -0.02 2.05 16 8 C 0.01 0.57 5.47 84.65 0.46 1.03 16 9 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 10 Si 0.94 43.97 27.47 68.60 1.88 45.85 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 14 C 0.51 18.82 7.65 87.66 0.67 19.49 16 15 O -0.59 -26.75 15.54 -3.04 -0.05 -26.80 16 16 C -0.14 -3.44 4.35 29.85 0.13 -3.31 16 17 C 0.14 3.32 5.46 86.38 0.47 3.79 16 18 N -0.47 -10.52 2.79 -526.03 -1.47 -11.99 16 19 C 0.26 4.41 12.51 179.96 2.25 6.66 16 20 N -0.48 -10.17 11.28 -191.39 -2.16 -12.33 16 21 C -0.12 -3.10 7.17 39.70 0.28 -2.82 16 22 C 0.27 7.57 8.05 133.86 1.08 8.65 16 23 N -0.58 -17.27 10.47 -197.89 -2.07 -19.34 16 24 C 0.35 8.67 12.25 180.85 2.22 10.89 16 25 N -0.60 -14.14 10.45 -196.97 -2.06 -16.20 16 26 C 0.50 11.07 7.87 133.46 1.05 12.12 16 27 N -0.80 -11.08 9.05 -54.66 -0.49 -11.58 16 28 H 0.05 1.31 6.34 -2.39 -0.02 1.30 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 2.39 5.85 -2.39 -0.01 2.38 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.05 1.92 6.60 -2.39 -0.02 1.91 16 35 H 0.05 2.17 5.19 -2.39 -0.01 2.16 16 36 H 0.02 1.00 6.78 -2.39 -0.02 0.99 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.09 2.47 7.85 -2.38 -0.02 2.45 16 39 H 0.13 2.29 7.73 -2.39 -0.02 2.27 16 40 H 0.13 2.55 8.04 -2.39 -0.02 2.53 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.27 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 44 H 0.42 4.02 8.95 -92.71 -0.83 3.19 16 45 H 0.42 4.66 8.85 -92.71 -0.82 3.84 16 Total: -1.00 -83.80 373.20 1.90 -81.90 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.65 Total: 20.33 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 10.58 Total: 34.03 kcal Atomic # 7 Polarization: -145.44 SS G_CDS: -9.86 Total: -155.31 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -83.80 1.90 -81.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.415 kcal (2) G-P(sol) polarization free energy of solvation -83.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds