Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.50699 * 109.46930 * 240.00245 * 2 1 3 5 5 H 1.08003 * 119.99711 * 241.34361 * 4 2 1 6 6 C 1.37881 * 120.00418 * 61.35088 * 4 2 1 7 7 N 1.31505 * 119.99985 * 193.97349 * 6 4 2 8 8 Si 1.86798 * 119.99480 * 13.97325 * 6 4 2 9 9 H 1.48492 * 109.47501 * 84.55307 * 8 6 4 10 10 H 1.48505 * 109.46696 * 204.54954 * 8 6 4 11 11 H 1.48497 * 109.47458 * 324.54578 * 8 6 4 12 12 C 1.52995 * 109.46929 * 120.00229 * 2 1 3 13 13 N 1.46497 * 109.47095 * 299.99999 * 12 2 1 14 14 C 1.34776 * 120.00130 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99997 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00363 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47328 * 180.02562 * 16 14 13 18 18 N 1.46497 * 109.47095 * 180.02562 * 17 16 14 19 19 C 1.36318 * 126.27871 * 265.02508 * 18 17 16 20 20 N 1.30138 * 109.97857 * 180.02562 * 19 18 17 21 21 C 1.35471 * 109.44220 * 359.97438 * 20 19 18 22 22 C 1.37199 * 126.27899 * 85.02583 * 18 17 16 23 23 N 1.32892 * 134.91823 * 359.97438 * 22 18 17 24 24 C 1.31652 * 120.64001 * 180.02562 * 23 22 18 25 25 N 1.32043 * 122.46234 * 0.02562 * 24 23 22 26 26 C 1.32915 * 121.19505 * 359.97438 * 25 24 23 27 27 N 1.38379 * 120.77409 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47521 * 309.36919 * 1 2 3 29 29 H 1.09002 * 109.47032 * 69.36797 * 1 2 3 30 30 H 1.09002 * 109.47296 * 189.36117 * 1 2 3 31 31 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47632 * 300.00105 * 3 2 1 33 33 H 1.09002 * 109.46781 * 60.00135 * 3 2 1 34 34 H 0.96999 * 120.00023 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47200 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.47353 * 60.00064 * 12 2 1 37 37 H 0.96995 * 120.00335 * 0.02562 * 13 12 2 38 38 H 1.09004 * 109.46594 * 60.00360 * 16 14 13 39 39 H 1.09000 * 109.47142 * 300.00679 * 16 14 13 40 40 H 1.09004 * 109.47200 * 60.00473 * 17 16 14 41 41 H 1.09000 * 109.47353 * 300.00291 * 17 16 14 42 42 H 1.07995 * 125.01536 * 0.02562 * 19 18 17 43 43 H 1.07999 * 118.76894 * 180.28099 * 24 23 22 44 44 H 0.97007 * 120.00150 * 0.02562 * 27 26 25 45 45 H 0.97006 * 120.00313 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7224 -0.2233 -2.4826 7 7 1.9159 -0.9724 -3.5460 8 14 1.0277 1.5007 -2.6683 9 1 2.1417 2.4817 -2.7083 10 1 0.2471 1.5867 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4453 14 6 1.8767 -0.4915 3.6695 15 8 2.5740 -1.4776 3.7807 16 6 1.3749 0.2191 4.9000 17 6 1.8847 -0.5022 6.1491 18 7 1.3963 0.1883 7.3453 19 6 2.0663 1.1370 8.0590 20 7 1.3380 1.5364 9.0609 21 6 0.1576 0.8718 9.0535 22 6 0.1808 -0.0012 7.9527 23 7 -0.8735 -0.7761 7.7205 24 6 -1.9272 -0.7293 8.5084 25 7 -1.9954 0.0748 9.5536 26 6 -0.9897 0.8862 9.8647 27 7 -1.0708 1.7258 10.9617 28 1 -0.3634 0.6518 0.7944 29 1 -0.3633 0.3621 -0.9618 30 1 -0.3634 -1.0140 0.1672 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6975 -0.6299 -4.4268 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7490 1.2492 37 1 0.9937 0.7577 2.3564 38 1 0.2848 0.2199 4.8998 39 1 1.7389 1.2466 4.9000 40 1 2.9748 -0.5026 6.1491 41 1 1.5210 -1.5297 6.1493 42 1 3.0555 1.5032 7.8274 43 1 -2.7655 -1.3757 8.2943 44 1 -1.8682 1.7264 11.5142 45 1 -0.3299 2.3132 11.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597760658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = 75.569417 kcal Electronic energy + Delta-G solvation = -27697.312701 eV Core-core repulsion = 23751.458795 eV Total energy + Delta-G solvation = -3945.853907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.82777 -39.79995 -39.40069 -36.92518 -36.11068 -34.79069 -33.43687 -32.29875 -31.63904 -30.70352 -29.55994 -26.57424 -26.38752 -25.17588 -24.52761 -24.34760 -23.47074 -21.06515 -20.24285 -19.23916 -18.89451 -18.68025 -17.39143 -16.94982 -16.39339 -16.30742 -16.08063 -15.73017 -15.34347 -15.10530 -15.05127 -14.52808 -14.34265 -14.10728 -13.95608 -13.37769 -13.08111 -12.88698 -12.70542 -12.60350 -12.35304 -12.25168 -12.10306 -11.91078 -11.58627 -11.33313 -10.70591 -10.50611 -10.38955 -10.31927 -10.23132 -10.12908 -9.78877 -9.54416 -9.34081 -9.17694 -8.74574 -8.66567 -8.50683 -8.24353 -6.19365 -4.17008 0.57829 1.08436 1.95601 2.39962 2.76036 2.93852 3.19683 3.26507 3.34885 3.43401 3.66371 3.71169 3.86434 4.14749 4.30826 4.44542 4.46105 4.53119 4.74103 4.89669 5.08758 5.11186 5.21025 5.43018 5.54235 5.67430 5.69917 5.97669 5.98466 6.11762 6.28383 6.36879 6.39278 6.45018 6.55208 6.56055 6.61784 6.67188 6.77948 6.88163 7.14974 7.25846 7.34391 7.36086 7.66212 7.76435 8.03385 8.36080 8.43594 8.85729 9.44199 10.93623 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002157 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.783427 B =12979.416276 C =13184.371595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.141 3.859 13 N -0.718 5.718 14 C 0.513 3.487 15 O -0.548 6.548 16 C -0.159 4.159 17 C 0.129 3.871 18 N -0.469 5.469 19 C 0.253 3.747 20 N -0.467 5.467 21 C -0.112 4.112 22 C 0.302 3.698 23 N -0.554 5.554 24 C 0.362 3.638 25 N -0.595 5.595 26 C 0.506 3.494 27 N -0.820 5.820 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.409 0.591 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 7.265 26.718 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.019 3.981 13 N -0.369 5.369 14 C 0.298 3.702 15 O -0.427 6.427 16 C -0.200 4.200 17 C 0.008 3.992 18 N -0.161 5.161 19 C -0.033 4.033 20 N -0.186 5.186 21 C -0.239 4.239 22 C 0.060 3.940 23 N -0.278 5.278 24 C 0.070 3.930 25 N -0.325 5.325 26 C 0.252 3.748 27 N -0.363 5.363 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.240 0.760 43 H 0.221 0.779 44 H 0.239 0.761 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.407 6.465 26.789 27.908 hybrid contribution -0.114 1.562 -0.631 1.689 sum -4.521 8.027 26.157 27.732 Atomic orbital electron populations 1.22306 0.97817 0.99885 1.00005 1.18726 0.92534 0.92249 0.93800 1.22365 1.01194 0.98322 0.98587 1.20697 1.34184 1.12355 0.87940 0.90521 1.24980 0.94670 0.97312 0.95812 1.69943 1.48006 1.35894 0.98747 0.87291 0.79321 0.85524 0.76038 1.21360 1.23355 1.17567 1.21553 0.98652 0.95902 0.81982 1.46309 1.52609 1.31818 1.06149 1.20107 0.80815 0.84738 0.84569 1.90718 1.38572 1.26459 1.86929 1.21988 1.03835 1.01166 0.92987 1.21658 1.00962 0.96908 0.79712 1.45289 1.12115 1.34101 1.24587 1.25415 0.99432 0.89561 0.88940 1.70214 1.02360 1.25344 1.20648 1.19689 0.97060 1.05352 1.01830 1.18774 0.88387 0.94839 0.91958 1.67306 1.00325 1.26489 1.33705 1.24480 0.93361 0.91492 0.83654 1.68045 1.28460 1.12670 1.23298 1.17787 0.85685 0.86309 0.85005 1.42201 1.23174 1.42740 1.28196 0.95995 0.92470 0.93336 0.92761 0.93983 0.95260 0.92509 0.91824 0.91706 0.76787 0.88215 0.88458 0.87311 0.87565 0.76043 0.77941 0.76073 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.53 37.16 0.28 -2.54 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.87 7.52 37.16 0.28 -2.59 16 4 C -0.51 -13.48 8.62 -34.44 -0.30 -13.78 16 5 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 6 C 0.08 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 8 Si 0.89 20.72 22.79 -169.99 -3.87 16.85 16 9 H -0.29 -6.66 7.10 56.52 0.40 -6.26 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.25 -5.29 4.65 56.52 0.26 -5.03 16 12 C 0.14 2.68 4.49 -4.05 -0.02 2.66 16 13 N -0.72 -10.72 5.00 -60.30 -0.30 -11.02 16 14 C 0.51 7.23 7.83 -10.99 -0.09 7.14 16 15 O -0.55 -9.66 15.98 5.55 0.09 -9.57 16 16 C -0.16 -1.57 6.02 -27.89 -0.17 -1.73 16 17 C 0.13 1.23 5.45 -4.05 -0.02 1.20 16 18 N -0.47 -4.59 2.79 -117.63 -0.33 -4.92 16 19 C 0.25 2.09 12.51 -89.50 -1.12 0.97 16 20 N -0.47 -4.83 11.28 -11.85 -0.13 -4.96 16 21 C -0.11 -1.28 7.17 -84.54 -0.61 -1.89 16 22 C 0.30 3.61 8.05 -155.80 -1.25 2.36 16 23 N -0.55 -6.68 10.47 -13.90 -0.15 -6.83 16 24 C 0.36 3.65 12.25 -92.06 -1.13 2.52 16 25 N -0.59 -6.19 10.45 -13.61 -0.14 -6.34 16 26 C 0.51 5.18 7.87 -154.66 -1.22 3.96 16 27 N -0.82 -5.37 9.05 31.37 0.28 -5.09 16 28 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 29 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 30 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 33 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.40 5.16 6.26 -40.82 -0.26 4.91 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.11 1.19 8.10 -51.93 -0.42 0.77 16 42 H 0.22 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.41 1.86 8.95 -40.82 -0.37 1.49 16 45 H 0.42 2.24 8.85 -40.82 -0.36 1.88 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -34.23 363.80 -9.79 -44.02 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.96 Total: 7.08 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -5.53 Total: 0.75 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.01 Total: -64.61 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -3.87 Total: 16.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.23 -9.79 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.594 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds