Wall clock time and date at job start Tue Mar 31 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.50699 * 109.46930 * 240.00245 * 2 1 3 5 5 H 1.08003 * 119.99711 * 241.34361 * 4 2 1 6 6 C 1.37881 * 120.00418 * 61.35088 * 4 2 1 7 7 N 1.31505 * 119.99985 * 193.97349 * 6 4 2 8 8 Si 1.86798 * 119.99480 * 13.97325 * 6 4 2 9 9 H 1.48492 * 109.47501 * 84.55307 * 8 6 4 10 10 H 1.48505 * 109.46696 * 204.54954 * 8 6 4 11 11 H 1.48497 * 109.47458 * 324.54578 * 8 6 4 12 12 C 1.52995 * 109.46929 * 120.00229 * 2 1 3 13 13 N 1.46497 * 109.47095 * 299.99999 * 12 2 1 14 14 C 1.34776 * 120.00130 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99997 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00363 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47328 * 180.02562 * 16 14 13 18 18 N 1.46497 * 109.47095 * 180.02562 * 17 16 14 19 19 C 1.36318 * 126.27871 * 265.02508 * 18 17 16 20 20 N 1.30138 * 109.97857 * 180.02562 * 19 18 17 21 21 C 1.35471 * 109.44220 * 359.97438 * 20 19 18 22 22 C 1.37199 * 126.27899 * 85.02583 * 18 17 16 23 23 N 1.32892 * 134.91823 * 359.97438 * 22 18 17 24 24 C 1.31652 * 120.64001 * 180.02562 * 23 22 18 25 25 N 1.32043 * 122.46234 * 0.02562 * 24 23 22 26 26 C 1.32915 * 121.19505 * 359.97438 * 25 24 23 27 27 N 1.38379 * 120.77409 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47521 * 309.36919 * 1 2 3 29 29 H 1.09002 * 109.47032 * 69.36797 * 1 2 3 30 30 H 1.09002 * 109.47296 * 189.36117 * 1 2 3 31 31 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47632 * 300.00105 * 3 2 1 33 33 H 1.09002 * 109.46781 * 60.00135 * 3 2 1 34 34 H 0.96999 * 120.00023 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47200 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.47353 * 60.00064 * 12 2 1 37 37 H 0.96995 * 120.00335 * 0.02562 * 13 12 2 38 38 H 1.09004 * 109.46594 * 60.00360 * 16 14 13 39 39 H 1.09000 * 109.47142 * 300.00679 * 16 14 13 40 40 H 1.09004 * 109.47200 * 60.00473 * 17 16 14 41 41 H 1.09000 * 109.47353 * 300.00291 * 17 16 14 42 42 H 1.07995 * 125.01536 * 0.02562 * 19 18 17 43 43 H 1.07999 * 118.76894 * 180.28099 * 24 23 22 44 44 H 0.97007 * 120.00150 * 0.02562 * 27 26 25 45 45 H 0.97006 * 120.00313 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7224 -0.2233 -2.4826 7 7 1.9159 -0.9724 -3.5460 8 14 1.0277 1.5007 -2.6683 9 1 2.1417 2.4817 -2.7083 10 1 0.2471 1.5867 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4453 14 6 1.8767 -0.4915 3.6695 15 8 2.5740 -1.4776 3.7807 16 6 1.3749 0.2191 4.9000 17 6 1.8847 -0.5022 6.1491 18 7 1.3963 0.1883 7.3453 19 6 2.0663 1.1370 8.0590 20 7 1.3380 1.5364 9.0609 21 6 0.1576 0.8718 9.0535 22 6 0.1808 -0.0012 7.9527 23 7 -0.8735 -0.7761 7.7205 24 6 -1.9272 -0.7293 8.5084 25 7 -1.9954 0.0748 9.5536 26 6 -0.9897 0.8862 9.8647 27 7 -1.0708 1.7258 10.9617 28 1 -0.3634 0.6518 0.7944 29 1 -0.3633 0.3621 -0.9618 30 1 -0.3634 -1.0140 0.1672 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6975 -0.6299 -4.4268 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7490 1.2492 37 1 0.9937 0.7577 2.3564 38 1 0.2848 0.2199 4.8998 39 1 1.7389 1.2466 4.9000 40 1 2.9748 -0.5026 6.1491 41 1 1.5210 -1.5297 6.1493 42 1 3.0555 1.5032 7.8274 43 1 -2.7655 -1.3757 8.2943 44 1 -1.8682 1.7264 11.5142 45 1 -0.3299 2.3132 11.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597760658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:58 Heat of formation + Delta-G solvation = 51.309758 kcal Electronic energy + Delta-G solvation = -27698.364679 eV Core-core repulsion = 23751.458795 eV Total energy + Delta-G solvation = -3946.905884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.52609 -40.92409 -40.21422 -38.47903 -36.80149 -35.55982 -35.00378 -33.47391 -32.99115 -31.59626 -30.24133 -28.04625 -27.79591 -27.01680 -25.43991 -25.19834 -24.26785 -21.82551 -21.38094 -20.92498 -19.59454 -19.37737 -18.47463 -18.00762 -17.68032 -17.23884 -17.12325 -16.81252 -16.70265 -16.49902 -15.72442 -15.44755 -15.24645 -14.99951 -14.87066 -14.81892 -14.67739 -14.19364 -14.12660 -14.00708 -13.75661 -13.40316 -13.05729 -12.93072 -12.63568 -12.39426 -12.30136 -12.15619 -11.96017 -11.76394 -11.43594 -11.14361 -11.02679 -10.84596 -10.61826 -10.40467 -10.31134 -10.09751 -10.00168 -8.92201 -8.30203 -6.31752 -0.11085 0.31979 1.24120 1.36665 1.37256 1.50701 1.63952 1.73020 2.31935 2.33991 2.34532 2.91333 3.03764 3.05961 3.18226 3.43006 3.63076 3.77746 3.89883 3.97184 4.10495 4.18228 4.32362 4.36874 4.41728 4.44902 4.71579 4.75793 4.82742 4.84831 4.85878 4.94684 4.99093 5.06813 5.18262 5.42324 5.43011 5.54657 5.71652 5.72076 5.79490 5.94231 6.17701 6.30164 6.60348 6.64635 6.72817 6.73318 7.27218 7.32848 7.33152 8.86864 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002157 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.783427 B =12979.416276 C =13184.371595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.026 3.974 3 C -0.147 4.147 4 C -0.516 4.516 5 H 0.028 0.972 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.318 1.318 11 H -0.204 1.204 12 C 0.157 3.843 13 N -0.710 5.710 14 C 0.516 3.484 15 O -0.586 6.586 16 C -0.141 4.141 17 C 0.135 3.865 18 N -0.469 5.469 19 C 0.264 3.736 20 N -0.485 5.485 21 C -0.129 4.129 22 C 0.277 3.723 23 N -0.578 5.578 24 C 0.355 3.645 25 N -0.603 5.603 26 C 0.494 3.506 27 N -0.803 5.803 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.264 0.736 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.412 0.588 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.266 0.734 43 H 0.231 0.769 44 H 0.419 0.581 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 10.468 29.248 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 C -0.203 4.203 4 C -0.555 4.555 5 H 0.046 0.954 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.248 1.248 11 H -0.128 1.128 12 C 0.033 3.967 13 N -0.362 5.362 14 C 0.303 3.697 15 O -0.467 6.467 16 C -0.181 4.181 17 C 0.013 3.987 18 N -0.160 5.160 19 C -0.022 4.022 20 N -0.204 5.204 21 C -0.256 4.256 22 C 0.036 3.964 23 N -0.304 5.304 24 C 0.064 3.936 25 N -0.334 5.334 26 C 0.239 3.761 27 N -0.347 5.347 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.249 0.751 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.282 0.718 43 H 0.247 0.753 44 H 0.251 0.749 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.294 9.716 29.403 31.416 hybrid contribution 0.226 0.435 -1.325 1.412 sum -5.068 10.151 28.079 30.284 Atomic orbital electron populations 1.22231 0.96262 1.00562 1.00861 1.18665 0.93627 0.93251 0.91948 1.22288 1.01098 0.96660 1.00302 1.21035 1.32818 1.11046 0.90555 0.95400 1.25888 0.95484 1.01657 0.95306 1.70112 1.50722 1.38295 0.99406 0.86322 0.79376 0.79927 0.76868 1.20838 1.24751 1.12784 1.21027 0.97544 0.94895 0.83226 1.46060 1.52908 1.32078 1.05176 1.20786 0.79662 0.84093 0.85209 1.90715 1.40274 1.28281 1.87444 1.21875 1.03754 1.02105 0.90382 1.21567 1.01806 0.95706 0.79637 1.45344 1.11648 1.34424 1.24595 1.26354 1.00249 0.88057 0.87586 1.70226 1.02329 1.26049 1.21760 1.19907 0.97791 1.05736 1.02123 1.19121 0.89124 0.95395 0.92803 1.67342 1.01035 1.27317 1.34704 1.25078 0.93685 0.91522 0.83277 1.68119 1.28625 1.13084 1.23579 1.18049 0.85605 0.86714 0.85736 1.42172 1.23769 1.41662 1.27077 0.91549 0.93746 0.94193 0.93271 0.94875 0.90585 0.92730 0.93485 0.94243 0.75071 0.87970 0.85160 0.85537 0.89849 0.71825 0.75342 0.74904 0.74339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.66 16 2 C 0.03 1.06 0.50 -52.93 -0.03 1.04 16 3 C -0.15 -5.16 7.52 71.98 0.54 -4.62 16 4 C -0.52 -27.89 8.62 25.60 0.22 -27.67 16 5 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 6 C 0.01 0.78 5.32 84.66 0.45 1.23 16 7 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 8 Si 0.95 42.04 22.79 68.60 1.56 43.61 16 9 H -0.28 -12.20 7.10 99.48 0.71 -11.50 16 10 H -0.32 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.20 -7.59 4.65 99.48 0.46 -7.13 16 12 C 0.16 5.87 4.49 86.38 0.39 6.26 16 13 N -0.71 -19.15 5.00 -463.07 -2.32 -21.46 16 14 C 0.52 13.30 7.83 87.66 0.69 13.98 16 15 O -0.59 -20.18 15.98 -3.04 -0.05 -20.23 16 16 C -0.14 -2.28 6.02 29.85 0.18 -2.10 16 17 C 0.13 2.23 5.45 86.38 0.47 2.70 16 18 N -0.47 -8.02 2.79 -526.06 -1.47 -9.49 16 19 C 0.26 3.48 12.51 179.96 2.25 5.73 16 20 N -0.48 -8.90 11.28 -191.40 -2.16 -11.06 16 21 C -0.13 -2.75 7.17 39.69 0.28 -2.46 16 22 C 0.28 6.23 8.05 133.86 1.08 7.30 16 23 N -0.58 -13.45 10.47 -197.89 -2.07 -15.52 16 24 C 0.36 6.83 12.25 180.85 2.22 9.05 16 25 N -0.60 -11.92 10.45 -196.96 -2.06 -13.98 16 26 C 0.49 9.50 7.87 133.46 1.05 10.55 16 27 N -0.80 -9.27 9.05 -54.66 -0.49 -9.77 16 28 H 0.07 1.84 7.13 -2.39 -0.02 1.83 16 29 H 0.04 1.74 4.30 -2.39 -0.01 1.73 16 30 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.03 1.24 2.25 -2.39 -0.01 1.23 16 33 H 0.08 1.97 6.86 -2.39 -0.02 1.95 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.41 8.67 6.26 -92.71 -0.58 8.09 16 38 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.13 1.65 8.09 -2.38 -0.02 1.63 16 41 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 42 H 0.27 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.23 2.68 8.06 -2.91 -0.02 2.65 16 44 H 0.42 3.13 8.95 -92.70 -0.83 2.30 16 45 H 0.42 3.84 8.85 -92.70 -0.82 3.02 16 Total: -1.00 -79.39 363.80 0.18 -79.21 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -1.40 Total: 20.29 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 10.33 Total: 16.34 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -10.27 Total: -139.22 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.56 Total: 43.61 kcal Total: -79.39 0.18 -79.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.521 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds