Wall clock time and date at job start Tue Mar 31 2020 17:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35243 * 126.07359 * 2 1 4 4 C 1.40397 * 107.87166 * 179.88077 * 3 2 1 5 5 N 1.40199 * 125.97582 * 180.17193 * 4 3 2 6 6 C 1.34778 * 119.99597 * 0.26910 * 5 4 3 7 7 O 1.21585 * 120.00408 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99706 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00033 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00262 * 180.02562 * 8 6 5 11 11 C 1.50700 * 109.47577 * 95.06990 * 10 8 6 12 12 N 1.30503 * 125.64716 * 83.55920 * 11 10 8 13 13 C 1.34120 * 109.25310 * 179.89481 * 12 11 10 14 14 C 1.34669 * 108.02474 * 0.36668 * 13 12 11 15 15 N 1.35040 * 125.65374 * 263.86997 * 11 10 8 16 16 C 1.46508 * 126.39376 * 359.97438 * 15 11 10 17 17 N 1.31211 * 108.05767 * 0.37934 * 4 3 2 18 18 N 1.34973 * 126.07156 * 180.29888 * 2 1 3 19 19 C 1.46499 * 125.97296 * 359.97438 * 18 2 1 20 20 C 1.50698 * 109.47128 * 89.99693 * 19 18 2 21 21 H 1.08000 * 120.00045 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00347 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99592 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47085 * 60.00155 * 24 22 20 26 26 H 1.48500 * 109.47497 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46957 * 300.00343 * 24 22 20 28 28 H 1.08994 * 109.47476 * 269.69646 * 1 2 3 29 29 H 1.09000 * 109.46688 * 149.69246 * 1 2 3 30 30 H 1.08994 * 109.46781 * 29.69846 * 1 2 3 31 31 H 1.08001 * 126.06643 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00340 * 180.26767 * 5 4 3 33 33 H 1.09006 * 109.46872 * 84.86015 * 9 8 6 34 34 H 1.09000 * 109.47132 * 204.86205 * 9 8 6 35 35 H 1.09000 * 109.47098 * 324.86554 * 9 8 6 36 36 H 1.08993 * 109.47119 * 215.07677 * 10 8 6 37 37 H 1.09008 * 109.46474 * 335.06928 * 10 8 6 38 38 H 1.07998 * 125.98767 * 180.11858 * 13 12 11 39 39 H 1.07995 * 126.59453 * 179.73634 * 14 13 12 40 40 H 1.09000 * 109.46815 * 84.88686 * 16 15 11 41 41 H 1.09000 * 109.46952 * 204.88056 * 16 15 11 42 42 H 1.08998 * 109.47455 * 324.88136 * 16 15 11 43 43 H 1.09002 * 109.46947 * 209.99624 * 19 18 2 44 44 H 1.08998 * 109.47526 * 329.99558 * 19 18 2 45 45 H 0.96996 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 0.0028 5 7 4.7738 1.4751 0.0071 6 6 4.6370 2.8159 0.0144 7 8 3.5278 3.3139 0.0177 8 7 5.7298 3.6048 0.0180 9 6 7.0663 3.0048 0.0146 10 6 5.5812 5.0621 0.0265 11 6 5.6564 5.5666 1.4446 12 7 6.7534 5.8167 2.1058 13 6 6.4394 6.2512 3.3352 14 6 5.0971 6.2633 3.4427 15 7 4.5999 5.8290 2.2437 16 6 3.1856 5.6771 1.8928 17 7 3.6338 -0.6575 -0.0039 18 7 2.3017 -1.0909 -0.0057 19 6 1.8501 -2.4846 -0.0124 20 6 1.6946 -2.9554 -1.4355 21 1 1.9111 -2.2838 -2.2532 22 6 1.2772 -4.2438 -1.6938 23 7 1.0141 -5.0618 -0.6980 24 14 1.0852 -4.8276 -3.4577 25 1 2.3911 -4.7267 -4.1575 26 1 0.6273 -6.2402 -3.4646 27 1 0.0840 -3.9798 -4.1535 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8926 -0.5091 31 1 1.9721 2.1211 0.0004 32 1 5.6588 1.0779 0.0048 33 1 7.3598 2.7771 -1.0103 34 1 7.7798 3.7044 0.4499 35 1 7.0538 2.0863 0.6014 36 1 6.3805 5.5123 -0.5621 37 1 4.6168 5.3315 -0.4044 38 1 7.1404 6.5370 4.1055 39 1 4.5233 6.5582 4.3088 40 1 2.8776 4.6456 2.0640 41 1 2.5842 6.3433 2.5113 42 1 3.0428 5.9293 0.8420 43 1 2.5850 -3.1071 0.4980 44 1 0.8917 -2.5585 0.5014 45 1 0.7208 -5.9683 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:39 Heat of formation + Delta-G solvation = 127.725957 kcal Electronic energy + Delta-G solvation = -28289.684614 eV Core-core repulsion = 24346.092385 eV Total energy + Delta-G solvation = -3943.592229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26801 -40.83879 -39.76417 -35.91858 -34.94785 -34.10902 -33.39258 -31.62258 -30.98231 -30.44491 -27.72440 -27.01662 -26.83652 -26.36647 -25.71379 -23.03900 -21.59981 -21.39987 -20.06486 -19.74932 -19.14535 -17.61005 -17.29224 -16.71684 -16.67635 -16.07298 -15.64991 -15.42965 -14.87029 -14.69692 -14.45931 -14.17671 -14.03289 -13.83394 -13.49276 -13.11794 -13.04273 -12.96019 -12.72487 -12.60537 -12.48947 -12.34728 -12.14979 -12.11035 -11.65919 -11.42242 -11.10662 -10.83333 -10.48600 -10.26715 -10.19506 -10.04948 -9.74823 -9.68249 -9.55414 -9.07049 -8.65097 -8.60523 -7.93820 -7.43109 -6.26352 -4.34257 1.69811 2.35984 2.57005 2.67897 2.96744 3.06420 3.22446 3.26398 3.30326 3.47687 3.78349 4.08186 4.23397 4.30281 4.55670 4.62810 4.86848 4.93693 5.00968 5.07041 5.16520 5.28530 5.34227 5.39606 5.47303 5.51927 5.55520 5.70338 5.92285 5.99891 6.07493 6.13727 6.24521 6.46374 6.55697 6.59188 6.60118 6.89194 6.96103 6.99397 7.07234 7.48445 7.66084 7.81892 7.88265 7.90973 8.05446 8.48665 8.65641 8.74527 9.32148 10.80790 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002465 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.956063 B =11354.229759 C =11846.707668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.281 3.719 5 N -0.641 5.641 6 C 0.717 3.283 7 O -0.568 6.568 8 N -0.623 5.623 9 C 0.075 3.925 10 C 0.220 3.780 11 C 0.182 3.818 12 N -0.484 5.484 13 C -0.033 4.033 14 C -0.055 4.055 15 N -0.444 5.444 16 C 0.074 3.926 17 N -0.323 5.323 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 21.877 5.196 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.291 5.291 6 C 0.418 3.582 7 O -0.444 6.444 8 N -0.361 5.361 9 C -0.068 4.068 10 C 0.095 3.905 11 C -0.081 4.081 12 N -0.203 5.203 13 C -0.182 4.182 14 C -0.190 4.190 15 N -0.125 5.125 16 C -0.068 4.068 17 N -0.154 5.154 18 N -0.100 5.100 19 C 0.142 3.858 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.053 20.735 4.876 22.438 hybrid contribution -0.771 0.041 -0.326 0.838 sum 6.282 20.776 4.550 22.177 Atomic orbital electron populations 1.20366 0.87997 1.03844 1.02443 1.21057 0.94861 0.87174 1.00964 1.21193 0.89616 0.99717 1.21426 1.18682 0.86557 0.89293 1.02741 1.41529 1.07794 1.03692 1.76105 1.15560 0.84317 0.80583 0.77772 1.90805 1.23190 1.73412 1.57027 1.46923 1.05550 1.05288 1.78361 1.21849 0.83621 0.99402 1.01959 1.19506 1.05062 0.78441 0.87514 1.23719 0.82204 1.05270 0.96906 1.70182 1.27032 1.17544 1.05565 1.22262 0.93361 1.06777 0.95778 1.22763 0.96205 1.09378 0.90646 1.45332 1.08222 1.47473 1.11476 1.22141 0.77424 1.04302 1.02949 1.77263 0.99969 1.08354 1.29769 1.48983 1.00872 1.07766 1.52390 1.19670 0.95925 0.71368 0.98880 1.21289 1.46885 0.97983 0.91370 0.91794 1.24929 0.94674 0.96036 0.98131 1.69913 1.44854 1.07007 1.31207 0.86412 0.78818 0.77663 0.83777 1.19980 1.20958 1.19927 0.91176 0.89927 0.90668 0.82285 0.75652 0.92017 0.89391 0.91648 0.87405 0.87784 0.81437 0.81016 0.89358 0.90092 0.89141 0.93054 0.92834 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.88 6.93 -82.28 -0.57 1.31 16 3 C -0.29 -5.77 9.52 -39.84 -0.38 -6.15 16 4 C 0.28 5.68 8.11 -154.36 -1.25 4.43 16 5 N -0.64 -10.17 5.32 -15.51 -0.08 -10.26 16 6 C 0.72 10.41 8.25 -86.91 -0.72 9.69 16 7 O -0.57 -9.11 11.58 5.29 0.06 -9.05 16 8 N -0.62 -6.88 2.86 -188.74 -0.54 -7.42 16 9 C 0.07 0.64 10.08 59.85 0.60 1.24 16 10 C 0.22 2.13 5.81 -5.20 -0.03 2.10 16 11 C 0.18 2.07 7.48 -155.42 -1.16 0.90 16 12 N -0.48 -5.94 11.25 -10.82 -0.12 -6.06 16 13 C -0.03 -0.35 11.87 -17.82 -0.21 -0.56 16 14 C -0.06 -0.53 11.58 -16.56 -0.19 -0.72 16 15 N -0.44 -4.66 3.15 -121.28 -0.38 -5.04 16 16 C 0.07 0.64 10.17 59.85 0.61 1.25 16 17 N -0.32 -7.45 12.59 31.44 0.40 -7.06 16 18 N -0.32 -7.49 3.59 -58.33 -0.21 -7.70 16 19 C 0.26 6.62 5.81 -5.20 -0.03 6.59 16 20 C -0.54 -14.71 9.39 -34.44 -0.32 -15.04 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 24 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.16 3.03 5.91 -52.49 -0.31 2.72 16 32 H 0.41 5.49 6.67 -40.82 -0.27 5.22 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.06 0.55 6.65 -51.93 -0.35 0.21 16 36 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.10 0.99 6.14 -51.92 -0.32 0.67 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.09 0.95 7.50 -51.93 -0.39 0.57 16 41 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.09 0.74 7.15 -51.93 -0.37 0.37 16 43 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.05 1.35 7.65 -51.93 -0.40 0.95 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -33.80 379.26 -8.99 -42.79 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.15 Total: 6.71 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -3.40 Total: 5.62 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.20 Total: -67.77 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.06 Total: -9.05 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.80 -8.99 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.513 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds