Wall clock time and date at job start Tue Mar 31 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35243 * 126.07359 * 2 1 4 4 C 1.40397 * 107.87166 * 179.88077 * 3 2 1 5 5 N 1.40199 * 125.97582 * 180.17193 * 4 3 2 6 6 C 1.34778 * 119.99597 * 0.26910 * 5 4 3 7 7 O 1.21585 * 120.00408 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99706 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00033 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00262 * 180.02562 * 8 6 5 11 11 C 1.50700 * 109.47577 * 95.06990 * 10 8 6 12 12 N 1.30503 * 125.64716 * 83.55920 * 11 10 8 13 13 C 1.34120 * 109.25310 * 179.89481 * 12 11 10 14 14 C 1.34669 * 108.02474 * 0.36668 * 13 12 11 15 15 N 1.35040 * 125.65374 * 263.86997 * 11 10 8 16 16 C 1.46508 * 126.39376 * 359.97438 * 15 11 10 17 17 N 1.31211 * 108.05767 * 0.37934 * 4 3 2 18 18 N 1.34973 * 126.07156 * 180.29888 * 2 1 3 19 19 C 1.46499 * 125.97296 * 359.97438 * 18 2 1 20 20 C 1.50698 * 109.47128 * 89.99693 * 19 18 2 21 21 H 1.08000 * 120.00045 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00347 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99592 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47085 * 60.00155 * 24 22 20 26 26 H 1.48500 * 109.47497 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46957 * 300.00343 * 24 22 20 28 28 H 1.08994 * 109.47476 * 269.69646 * 1 2 3 29 29 H 1.09000 * 109.46688 * 149.69246 * 1 2 3 30 30 H 1.08994 * 109.46781 * 29.69846 * 1 2 3 31 31 H 1.08001 * 126.06643 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00340 * 180.26767 * 5 4 3 33 33 H 1.09006 * 109.46872 * 84.86015 * 9 8 6 34 34 H 1.09000 * 109.47132 * 204.86205 * 9 8 6 35 35 H 1.09000 * 109.47098 * 324.86554 * 9 8 6 36 36 H 1.08993 * 109.47119 * 215.07677 * 10 8 6 37 37 H 1.09008 * 109.46474 * 335.06928 * 10 8 6 38 38 H 1.07998 * 125.98767 * 180.11858 * 13 12 11 39 39 H 1.07995 * 126.59453 * 179.73634 * 14 13 12 40 40 H 1.09000 * 109.46815 * 84.88686 * 16 15 11 41 41 H 1.09000 * 109.46952 * 204.88056 * 16 15 11 42 42 H 1.08998 * 109.47455 * 324.88136 * 16 15 11 43 43 H 1.09002 * 109.46947 * 209.99624 * 19 18 2 44 44 H 1.08998 * 109.47526 * 329.99558 * 19 18 2 45 45 H 0.96996 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 0.0028 5 7 4.7738 1.4751 0.0071 6 6 4.6370 2.8159 0.0144 7 8 3.5278 3.3139 0.0177 8 7 5.7298 3.6048 0.0180 9 6 7.0663 3.0048 0.0146 10 6 5.5812 5.0621 0.0265 11 6 5.6564 5.5666 1.4446 12 7 6.7534 5.8167 2.1058 13 6 6.4394 6.2512 3.3352 14 6 5.0971 6.2633 3.4427 15 7 4.5999 5.8290 2.2437 16 6 3.1856 5.6771 1.8928 17 7 3.6338 -0.6575 -0.0039 18 7 2.3017 -1.0909 -0.0057 19 6 1.8501 -2.4846 -0.0124 20 6 1.6946 -2.9554 -1.4355 21 1 1.9111 -2.2838 -2.2532 22 6 1.2772 -4.2438 -1.6938 23 7 1.0141 -5.0618 -0.6980 24 14 1.0852 -4.8276 -3.4577 25 1 2.3911 -4.7267 -4.1575 26 1 0.6273 -6.2402 -3.4646 27 1 0.0840 -3.9798 -4.1535 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8926 -0.5091 31 1 1.9721 2.1211 0.0004 32 1 5.6588 1.0779 0.0048 33 1 7.3598 2.7771 -1.0103 34 1 7.7798 3.7044 0.4499 35 1 7.0538 2.0863 0.6014 36 1 6.3805 5.5123 -0.5621 37 1 4.6168 5.3315 -0.4044 38 1 7.1404 6.5370 4.1055 39 1 4.5233 6.5582 4.3088 40 1 2.8776 4.6456 2.0640 41 1 2.5842 6.3433 2.5113 42 1 3.0428 5.9293 0.8420 43 1 2.5850 -3.1071 0.4980 44 1 0.8917 -2.5585 0.5014 45 1 0.7208 -5.9683 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611481344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:38 Heat of formation + Delta-G solvation = 107.595795 kcal Electronic energy + Delta-G solvation = -28290.557523 eV Core-core repulsion = 24346.092385 eV Total energy + Delta-G solvation = -3944.465139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.04737 -42.31051 -41.03659 -36.95307 -36.32306 -35.31700 -34.86839 -33.10790 -32.61611 -31.48448 -28.67327 -28.44908 -27.84985 -27.70824 -26.81048 -24.88945 -22.74790 -22.30524 -21.28049 -21.02982 -20.35672 -18.86205 -18.69538 -18.08094 -17.84656 -17.34413 -16.97528 -16.60194 -16.30449 -15.96117 -15.73727 -15.47651 -15.03291 -14.81802 -14.63791 -14.36144 -14.24355 -13.82664 -13.80680 -13.74803 -13.59047 -13.54577 -13.39417 -13.30937 -13.14869 -12.86104 -12.76138 -12.67128 -12.23789 -12.11451 -11.55186 -11.35067 -11.10657 -10.98726 -10.73142 -10.53272 -9.99721 -9.55367 -9.38158 -9.06605 -8.32139 -6.50218 0.80450 1.04494 1.28240 1.38565 1.40065 1.49107 1.63774 1.92676 1.97917 2.26300 2.35323 2.38828 2.86968 2.97229 3.46974 3.80414 3.88614 4.00249 4.14854 4.16483 4.25227 4.34892 4.48602 4.49101 4.61820 4.65864 4.74867 4.77646 4.78484 4.82129 4.86469 4.88033 4.97720 5.03207 5.13900 5.18457 5.38244 5.45746 5.53942 5.70146 5.81715 5.85151 5.97797 6.21608 6.28726 6.55620 6.63686 7.08691 7.11985 7.20827 7.32472 8.73319 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002465 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.956063 B =11354.229759 C =11846.707668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.292 4.292 4 C 0.291 3.709 5 N -0.637 5.637 6 C 0.713 3.287 7 O -0.584 6.584 8 N -0.614 5.614 9 C 0.071 3.929 10 C 0.219 3.781 11 C 0.166 3.834 12 N -0.506 5.506 13 C -0.055 4.055 14 C -0.053 4.053 15 N -0.450 5.450 16 C 0.077 3.923 17 N -0.364 5.364 18 N -0.344 5.344 19 C 0.277 3.723 20 C -0.553 4.553 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.273 1.273 27 H -0.265 1.265 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.417 0.583 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.186 0.814 39 H 0.202 0.798 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.022 0.978 44 H 0.052 0.948 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 23.557 4.697 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.323 4.323 4 C 0.036 3.964 5 N -0.290 5.290 6 C 0.414 3.586 7 O -0.462 6.462 8 N -0.350 5.350 9 C -0.071 4.071 10 C 0.095 3.905 11 C -0.097 4.097 12 N -0.226 5.226 13 C -0.203 4.203 14 C -0.187 4.187 15 N -0.132 5.132 16 C -0.065 4.065 17 N -0.195 5.195 18 N -0.127 5.127 19 C 0.158 3.842 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.198 1.198 27 H -0.189 1.189 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.190 0.810 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.203 0.797 39 H 0.219 0.781 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.931 22.461 4.385 23.912 hybrid contribution -0.642 -0.330 -0.082 0.727 sum 6.288 22.131 4.303 23.406 Atomic orbital electron populations 1.20490 0.85393 1.04381 1.04021 1.21766 0.96634 0.86432 0.99527 1.21398 0.89498 0.99982 1.21388 1.18973 0.88101 0.88888 1.00450 1.41577 1.07128 1.03999 1.76276 1.15715 0.85052 0.80156 0.77713 1.90776 1.24183 1.73507 1.57705 1.46985 1.05454 1.05637 1.76966 1.22022 0.82331 0.99402 1.03309 1.19714 1.06114 0.77377 0.87314 1.23929 0.82438 1.05847 0.97487 1.70144 1.27808 1.18216 1.06465 1.22710 0.94459 1.07279 0.95866 1.23293 0.96286 1.08088 0.91045 1.45537 1.08693 1.47239 1.11717 1.22167 0.76943 1.03532 1.03831 1.77178 1.00181 1.09950 1.32151 1.48763 1.01644 1.07509 1.54767 1.19209 0.94788 0.72525 0.97711 1.21415 1.47537 0.98382 0.91794 0.93201 1.25734 0.93962 0.95894 1.02238 1.69998 1.45073 1.07416 1.33180 0.85422 0.78753 0.77683 0.78740 1.20109 1.19785 1.18929 0.88987 0.91622 0.87769 0.81040 0.74486 0.90057 0.88684 0.91751 0.85079 0.87677 0.79724 0.78130 0.91617 0.87386 0.88833 0.95982 0.93062 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 9.89 71.24 0.70 -2.04 16 2 C 0.09 3.58 6.93 41.38 0.29 3.87 16 3 C -0.29 -11.53 9.52 22.10 0.21 -11.32 16 4 C 0.29 11.78 8.11 133.31 1.08 12.86 16 5 N -0.64 -19.89 5.32 -321.23 -1.71 -21.60 16 6 C 0.71 19.94 8.25 179.05 1.48 21.42 16 7 O -0.58 -18.14 11.58 -3.98 -0.05 -18.18 16 8 N -0.61 -12.63 2.86 -869.30 -2.48 -15.11 16 9 C 0.07 1.09 10.08 127.77 1.29 2.38 16 10 C 0.22 3.90 5.81 85.63 0.50 4.39 16 11 C 0.17 3.54 7.48 138.13 1.03 4.57 16 12 N -0.51 -11.80 11.25 -188.14 -2.12 -13.91 16 13 C -0.05 -1.08 11.87 83.52 0.99 -0.09 16 14 C -0.05 -0.91 11.58 83.09 0.96 0.05 16 15 N -0.45 -8.74 3.15 -537.60 -1.69 -10.43 16 16 C 0.08 1.22 10.17 127.77 1.30 2.52 16 17 N -0.36 -17.18 12.59 -54.43 -0.69 -17.87 16 18 N -0.34 -16.64 3.59 -338.45 -1.22 -17.86 16 19 C 0.28 14.66 5.81 85.63 0.50 15.16 16 20 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 21 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 22 C 0.02 1.24 5.46 84.65 0.46 1.70 16 23 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 24 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 29 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.17 6.32 5.91 -2.91 -0.02 6.31 16 32 H 0.42 11.03 6.67 -92.71 -0.62 10.41 16 33 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.06 1.01 6.65 -2.39 -0.02 0.99 16 36 H 0.13 1.69 8.11 -2.39 -0.02 1.67 16 37 H 0.11 1.84 6.14 -2.38 -0.01 1.83 16 38 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.07 1.36 7.50 -2.39 -0.02 1.35 16 41 H 0.11 1.07 8.13 -2.39 -0.02 1.05 16 42 H 0.09 1.40 7.15 -2.39 -0.02 1.38 16 43 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 2.68 7.65 -2.39 -0.02 2.67 16 45 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -73.52 379.26 3.80 -69.72 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.41 Total: 27.21 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 11.03 Total: 24.71 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -9.62 Total: -148.42 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.52 3.80 -69.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.316 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds