Wall clock time and date at job start Tue Mar 31 2020 18:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46897 * 2 1 4 4 C 1.52994 * 109.46927 * 120.00199 * 2 1 3 5 5 C 1.53004 * 109.47375 * 65.00343 * 4 2 1 6 6 N 1.46495 * 109.47232 * 179.97438 * 5 4 2 7 7 C 1.46504 * 120.00044 * 269.99840 * 6 5 4 8 8 C 1.50706 * 109.46958 * 262.04997 * 7 6 5 9 9 H 1.08002 * 120.00047 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00350 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46931 * 90.00541 * 12 10 8 14 14 H 1.48494 * 109.47429 * 210.00588 * 12 10 8 15 15 H 1.48497 * 109.46969 * 330.00657 * 12 10 8 16 16 C 1.34774 * 120.00334 * 89.99873 * 6 5 4 17 17 O 1.21693 * 119.99918 * 1.26043 * 16 6 5 18 18 C 1.46725 * 120.00422 * 181.26131 * 16 6 5 19 19 C 1.36669 * 126.02709 * 170.38918 * 18 16 6 20 20 C 1.40804 * 107.05385 * 179.76971 * 19 18 16 21 21 C 1.48500 * 126.28444 * 180.27287 * 20 19 18 22 22 N 1.34031 * 126.67270 * 359.83911 * 21 20 19 23 23 N 1.28988 * 107.27208 * 179.83592 * 22 21 20 24 24 N 1.28733 * 108.93955 * 0.42847 * 23 22 21 25 25 H 0.96997 * 125.34664 * 179.74633 * 24 23 22 26 26 N 1.28876 * 109.31216 * 359.72913 * 24 23 22 27 27 C 1.36565 * 107.43342 * 0.38011 * 20 19 18 28 28 N 1.34848 * 108.60955 * 359.61453 * 27 20 19 29 29 H 0.97004 * 125.52486 * 180.21852 * 28 27 20 30 30 H 1.09002 * 109.47204 * 59.99911 * 1 2 3 31 31 H 1.09005 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47577 * 299.99942 * 1 2 3 33 33 H 1.09002 * 109.46851 * 239.99928 * 2 1 3 34 34 H 1.09003 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47266 * 300.00051 * 3 2 1 36 36 H 1.09002 * 109.47429 * 60.00282 * 3 2 1 37 37 H 1.08998 * 109.47618 * 304.99965 * 4 2 1 38 38 H 1.09002 * 109.46861 * 185.00035 * 4 2 1 39 39 H 1.08998 * 109.47056 * 59.99278 * 5 4 2 40 40 H 1.09002 * 109.46875 * 299.99684 * 5 4 2 41 41 H 1.09001 * 109.47105 * 22.04392 * 7 6 5 42 42 H 1.08997 * 109.47329 * 142.04720 * 7 6 5 43 43 H 0.96999 * 120.00489 * 179.97438 * 11 10 8 44 44 H 1.08003 * 126.47101 * 359.97438 * 19 18 16 45 45 H 1.07995 * 125.69489 * 179.88947 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1241 -2.8863 2.3837 7 6 3.4524 -3.5043 2.3812 8 6 3.3198 -4.9789 2.0998 9 1 2.3437 -5.4124 1.9393 10 6 4.4446 -5.7745 2.0471 11 7 5.6332 -5.2467 2.2430 12 14 4.2803 -7.6024 1.6991 13 1 4.3503 -7.8355 0.2342 14 1 5.3837 -8.3353 2.3702 15 1 2.9762 -8.0894 2.2160 16 6 1.3518 -2.9533 3.4862 17 8 0.2394 -2.4600 3.4809 18 6 1.8523 -3.6210 4.6931 19 6 1.2614 -3.6032 5.9253 20 6 2.0711 -4.3725 6.7827 21 6 1.8210 -4.6403 8.2218 22 7 0.7879 -4.1959 8.9510 23 7 0.9392 -4.6529 10.1477 24 7 2.0201 -5.3504 10.1951 25 1 2.3632 -5.8008 10.9827 26 7 2.5747 -5.3566 9.0318 27 6 3.1299 -4.8252 6.0486 28 7 3.0000 -4.3760 4.7837 29 1 3.6156 -4.5554 4.0559 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6443 1.2951 39 1 2.0698 -2.6550 0.3001 40 1 0.5489 -2.2725 1.1420 41 1 4.0672 -3.0410 1.6094 42 1 3.9217 -3.3608 3.3544 43 1 6.4245 -5.8064 2.2064 44 1 0.3447 -3.0975 6.1904 45 1 3.9345 -5.4436 6.4181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820076090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:40 Heat of formation + Delta-G solvation = 127.847682 kcal Electronic energy + Delta-G solvation = -28484.496841 eV Core-core repulsion = 24540.909890 eV Total energy + Delta-G solvation = -3943.586951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.13735 -41.00858 -38.66694 -36.51553 -35.20264 -34.08879 -33.20987 -32.94600 -30.45362 -29.72300 -28.41046 -27.24251 -27.01682 -24.40291 -24.12590 -23.41939 -23.19023 -20.86743 -19.93351 -19.78225 -19.33163 -18.60429 -17.19373 -16.85398 -16.61660 -15.84270 -15.37433 -15.02323 -14.74661 -14.48921 -14.12953 -13.81149 -13.58985 -13.43359 -13.12834 -13.03599 -12.67424 -12.60440 -12.35189 -12.17592 -12.08183 -11.81683 -11.69085 -11.41064 -11.26456 -11.14015 -11.07963 -10.88944 -10.81755 -10.79959 -10.70895 -10.57460 -10.39554 -10.13873 -10.03526 -9.34827 -8.95783 -8.32703 -7.95547 -7.64556 -6.57652 -4.71650 1.27119 1.95877 2.19934 2.46885 3.02842 3.11906 3.16301 3.50957 3.69742 3.86437 4.01189 4.11101 4.34049 4.55837 4.73266 5.02879 5.09900 5.11970 5.33493 5.57938 5.66249 5.71586 5.72159 5.79667 5.80904 5.86885 5.94291 5.96922 5.98731 6.08962 6.21706 6.27395 6.35245 6.37936 6.41723 6.54286 6.59502 6.61535 6.64650 6.78569 7.09644 7.25083 7.38586 7.48633 7.59281 8.10125 8.18317 8.45310 8.46101 8.87879 9.01191 10.44426 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004012 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.624411 B = 6978.150862 C = 9556.010077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.597 5.597 7 C 0.218 3.782 8 C -0.561 4.561 9 H 0.072 0.928 10 C 0.066 3.934 11 N -0.882 5.882 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.268 1.268 16 C 0.589 3.411 17 O -0.557 6.557 18 C -0.033 4.033 19 C -0.085 4.085 20 C -0.142 4.142 21 C 0.278 3.722 22 N -0.275 5.275 23 N -0.062 5.062 24 N -0.238 5.238 25 H 0.470 0.530 26 N -0.314 5.314 27 C 0.067 3.933 28 N -0.500 5.500 29 H 0.455 0.545 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.274 0.726 44 H 0.150 0.850 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 3.336 4.894 6.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.097 3.903 8 C -0.599 4.599 9 H 0.090 0.910 10 C -0.140 4.140 11 N -0.518 5.518 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.192 1.192 16 C 0.378 3.622 17 O -0.437 6.437 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.153 4.153 21 C -0.002 4.002 22 N -0.148 5.148 23 N -0.057 5.057 24 N -0.083 5.083 25 H 0.323 0.677 26 N -0.166 5.166 27 C -0.080 4.080 28 N -0.108 5.108 29 H 0.316 0.684 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.168 0.832 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.245 3.600 5.176 6.693 hybrid contribution 1.017 -1.589 -0.346 1.918 sum -1.228 2.012 4.830 5.375 Atomic orbital electron populations 1.21884 0.95258 1.02120 1.01247 1.21044 0.95926 0.95927 0.98359 1.21823 1.00862 0.96191 1.01360 1.22018 1.01045 0.95828 0.97893 1.21409 1.00254 0.91044 0.87567 1.48047 1.18787 1.53706 1.12092 1.19776 0.78868 0.93155 0.98537 1.21693 0.94331 0.92607 1.51312 0.91018 1.25088 0.94836 0.99969 0.94092 1.69924 0.98107 1.36879 1.46871 0.86436 0.78501 0.83436 0.79193 1.19902 1.20565 1.19229 1.17045 0.84325 0.78883 0.81939 1.90740 1.19656 1.49658 1.83605 1.20031 0.92489 1.06161 0.96071 1.20791 0.99916 1.00483 0.90010 1.16326 1.00838 1.11550 0.86576 1.22948 0.88302 0.93610 0.95302 1.76090 1.21830 1.20634 0.96253 1.78839 1.04160 1.06474 1.16271 1.47627 1.15322 1.34879 1.10510 0.67683 1.74952 1.24982 1.24126 0.92520 1.21931 0.99798 1.01171 0.85082 1.44287 1.20183 1.35102 1.11233 0.68441 0.93291 0.92228 0.92631 0.91236 0.92815 0.93039 0.92824 0.91701 0.91882 0.90596 0.90328 0.93236 0.94654 0.91615 0.83237 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 2 C -0.09 -1.17 2.92 -90.63 -0.26 -1.43 16 3 C -0.14 -1.60 9.19 37.15 0.34 -1.26 16 4 C -0.13 -1.96 5.01 -26.73 -0.13 -2.10 16 5 C 0.12 2.10 5.14 -4.04 -0.02 2.08 16 6 N -0.60 -12.09 2.48 -176.58 -0.44 -12.53 16 7 C 0.22 4.71 4.73 -5.19 -0.02 4.69 16 8 C -0.56 -13.04 7.25 -34.44 -0.25 -13.29 16 9 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 10 C 0.07 1.54 5.05 -17.82 -0.09 1.45 16 11 N -0.88 -21.16 13.29 55.43 0.74 -20.43 16 12 Si 0.90 18.72 29.54 -169.99 -5.02 13.70 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 C 0.59 12.64 7.57 -12.83 -0.10 12.55 16 17 O -0.56 -12.71 16.45 5.19 0.09 -12.62 16 18 C -0.03 -0.68 6.58 -82.38 -0.54 -1.22 16 19 C -0.08 -1.63 10.57 -39.18 -0.41 -2.04 16 20 C -0.14 -2.54 6.10 -105.30 -0.64 -3.18 16 21 C 0.28 4.63 8.18 -156.31 -1.28 3.36 16 22 N -0.27 -4.60 12.54 32.16 0.40 -4.20 16 23 N -0.06 -0.86 13.47 60.35 0.81 -0.05 16 24 N -0.24 -2.64 7.90 60.35 0.48 -2.16 16 25 H 0.47 2.69 8.96 -340.37 -3.05 -0.36 16 26 N -0.31 -4.47 12.39 32.18 0.40 -4.07 16 27 C 0.07 1.17 11.84 -16.83 -0.20 0.98 16 28 N -0.50 -9.87 4.72 -9.54 -0.05 -9.91 16 29 H 0.46 9.58 3.23 -40.82 -0.13 9.45 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.08 1.40 5.83 -51.93 -0.30 1.09 16 41 H 0.05 1.11 8.01 -51.93 -0.42 0.70 16 42 H 0.04 0.80 5.19 -51.93 -0.27 0.53 16 43 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 44 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 45 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -27.74 376.39 -8.90 -36.65 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.70 Total: 10.84 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.28 Total: -0.89 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 2.34 Total: -53.35 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.74 -8.90 -36.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820076090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.494 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds