Wall clock time and date at job start Tue Mar 31 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46897 * 2 1 4 4 C 1.52994 * 109.46927 * 120.00199 * 2 1 3 5 5 C 1.53004 * 109.47375 * 65.00343 * 4 2 1 6 6 N 1.46495 * 109.47232 * 179.97438 * 5 4 2 7 7 C 1.46504 * 120.00044 * 269.99840 * 6 5 4 8 8 C 1.50706 * 109.46958 * 262.04997 * 7 6 5 9 9 H 1.08002 * 120.00047 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00350 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46931 * 90.00541 * 12 10 8 14 14 H 1.48494 * 109.47429 * 210.00588 * 12 10 8 15 15 H 1.48497 * 109.46969 * 330.00657 * 12 10 8 16 16 C 1.34774 * 120.00334 * 89.99873 * 6 5 4 17 17 O 1.21693 * 119.99918 * 1.26043 * 16 6 5 18 18 C 1.46725 * 120.00422 * 181.26131 * 16 6 5 19 19 C 1.36669 * 126.02709 * 170.38918 * 18 16 6 20 20 C 1.40804 * 107.05385 * 179.76971 * 19 18 16 21 21 C 1.48500 * 126.28444 * 180.27287 * 20 19 18 22 22 N 1.34031 * 126.67270 * 359.83911 * 21 20 19 23 23 N 1.28988 * 107.27208 * 179.83592 * 22 21 20 24 24 N 1.28733 * 108.93955 * 0.42847 * 23 22 21 25 25 H 0.96997 * 125.34664 * 179.74633 * 24 23 22 26 26 N 1.28876 * 109.31216 * 359.72913 * 24 23 22 27 27 C 1.36565 * 107.43342 * 0.38011 * 20 19 18 28 28 N 1.34848 * 108.60955 * 359.61453 * 27 20 19 29 29 H 0.97004 * 125.52486 * 180.21852 * 28 27 20 30 30 H 1.09002 * 109.47204 * 59.99911 * 1 2 3 31 31 H 1.09005 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47577 * 299.99942 * 1 2 3 33 33 H 1.09002 * 109.46851 * 239.99928 * 2 1 3 34 34 H 1.09003 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47266 * 300.00051 * 3 2 1 36 36 H 1.09002 * 109.47429 * 60.00282 * 3 2 1 37 37 H 1.08998 * 109.47618 * 304.99965 * 4 2 1 38 38 H 1.09002 * 109.46861 * 185.00035 * 4 2 1 39 39 H 1.08998 * 109.47056 * 59.99278 * 5 4 2 40 40 H 1.09002 * 109.46875 * 299.99684 * 5 4 2 41 41 H 1.09001 * 109.47105 * 22.04392 * 7 6 5 42 42 H 1.08997 * 109.47329 * 142.04720 * 7 6 5 43 43 H 0.96999 * 120.00489 * 179.97438 * 11 10 8 44 44 H 1.08003 * 126.47101 * 359.97438 * 19 18 16 45 45 H 1.07995 * 125.69489 * 179.88947 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1241 -2.8863 2.3837 7 6 3.4524 -3.5043 2.3812 8 6 3.3198 -4.9789 2.0998 9 1 2.3437 -5.4124 1.9393 10 6 4.4446 -5.7745 2.0471 11 7 5.6332 -5.2467 2.2430 12 14 4.2803 -7.6024 1.6991 13 1 4.3503 -7.8355 0.2342 14 1 5.3837 -8.3353 2.3702 15 1 2.9762 -8.0894 2.2160 16 6 1.3518 -2.9533 3.4862 17 8 0.2394 -2.4600 3.4809 18 6 1.8523 -3.6210 4.6931 19 6 1.2614 -3.6032 5.9253 20 6 2.0711 -4.3725 6.7827 21 6 1.8210 -4.6403 8.2218 22 7 0.7879 -4.1959 8.9510 23 7 0.9392 -4.6529 10.1477 24 7 2.0201 -5.3504 10.1951 25 1 2.3632 -5.8008 10.9827 26 7 2.5747 -5.3566 9.0318 27 6 3.1299 -4.8252 6.0486 28 7 3.0000 -4.3760 4.7837 29 1 3.6156 -4.5554 4.0559 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6443 1.2951 39 1 2.0698 -2.6550 0.3001 40 1 0.5489 -2.2725 1.1420 41 1 4.0672 -3.0410 1.6094 42 1 3.9217 -3.3608 3.3544 43 1 6.4245 -5.8064 2.2064 44 1 0.3447 -3.0975 6.1904 45 1 3.9345 -5.4436 6.4181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820076090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:39 Heat of formation + Delta-G solvation = 112.468572 kcal Electronic energy + Delta-G solvation = -28485.163730 eV Core-core repulsion = 24540.909890 eV Total energy + Delta-G solvation = -3944.253839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.28714 -42.52325 -40.24468 -37.83131 -36.74865 -35.26337 -34.69438 -34.40159 -31.86927 -31.16853 -29.90509 -28.83768 -27.98501 -25.58695 -25.45089 -25.16054 -24.48087 -22.33490 -21.22897 -20.97310 -20.79094 -19.80392 -18.89558 -18.29184 -17.98417 -17.41852 -16.89899 -16.44533 -16.25742 -15.92024 -15.50992 -15.07890 -14.83878 -14.71452 -14.58500 -14.42474 -14.30758 -14.13807 -13.71706 -13.48146 -13.29382 -13.09754 -12.99333 -12.90565 -12.77933 -12.54890 -12.33757 -12.29698 -12.10499 -12.00562 -11.98823 -11.96546 -11.64797 -11.52633 -11.41032 -11.03549 -10.74587 -9.84199 -9.54781 -9.11938 -8.37097 -6.56726 0.14906 0.62118 0.67126 1.36970 1.43079 1.50510 1.57155 2.08910 2.14606 2.31480 2.40503 2.54129 2.91130 3.00109 3.32015 3.74458 3.96117 3.99406 4.08819 4.23814 4.35592 4.36685 4.50525 4.55232 4.59089 4.63213 4.68997 4.79872 4.85807 4.90832 4.96444 5.03367 5.06614 5.09926 5.14440 5.15278 5.33172 5.48278 5.51087 5.54469 5.61853 5.71539 5.76581 5.80256 5.95958 6.39098 6.62692 6.65958 7.14429 7.26078 7.28854 8.64493 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004012 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.624411 B = 6978.150862 C = 9556.010077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.119 4.119 5 C 0.117 3.883 6 N -0.597 5.597 7 C 0.230 3.770 8 C -0.565 4.565 9 H 0.054 0.946 10 C 0.040 3.960 11 N -0.899 5.899 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.272 1.272 15 H -0.276 1.276 16 C 0.582 3.418 17 O -0.579 6.579 18 C -0.060 4.060 19 C -0.084 4.084 20 C -0.141 4.141 21 C 0.260 3.740 22 N -0.303 5.303 23 N -0.060 5.060 24 N -0.203 5.203 25 H 0.493 0.507 26 N -0.305 5.305 27 C 0.076 3.924 28 N -0.510 5.510 29 H 0.450 0.550 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.278 0.722 44 H 0.149 0.851 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 2.708 5.550 6.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.006 4.006 6 N -0.326 5.326 7 C 0.109 3.891 8 C -0.603 4.603 9 H 0.073 0.927 10 C -0.164 4.164 11 N -0.536 5.536 12 Si 0.772 3.228 13 H -0.199 1.199 14 H -0.196 1.196 15 H -0.201 1.201 16 C 0.372 3.628 17 O -0.462 6.462 18 C -0.173 4.173 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.020 4.020 22 N -0.176 5.176 23 N -0.055 5.055 24 N -0.054 5.054 25 H 0.352 0.648 26 N -0.158 5.158 27 C -0.070 4.070 28 N -0.117 5.117 29 H 0.309 0.691 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.167 0.833 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.547 2.976 5.854 6.747 hybrid contribution 0.817 -1.443 -0.407 1.708 sum -0.729 1.533 5.447 5.705 Atomic orbital electron populations 1.21863 0.94937 1.01603 1.01896 1.21046 0.96163 0.96744 0.96978 1.21795 1.00968 0.95003 1.02149 1.21918 1.00658 0.94339 0.98825 1.21581 0.99935 0.92344 0.86699 1.48107 1.18243 1.53571 1.12667 1.19552 0.79238 0.92477 0.97861 1.21642 0.93664 0.93346 1.51696 0.92727 1.25536 0.94515 1.02574 0.93788 1.69967 0.98510 1.37943 1.47181 0.85696 0.78131 0.80106 0.78873 1.19926 1.19625 1.20052 1.17275 0.84184 0.78813 0.82519 1.90706 1.20473 1.50869 1.84102 1.20009 0.93531 1.07597 0.96180 1.20878 0.99929 1.00406 0.89980 1.16366 1.00421 1.10910 0.87364 1.22758 0.89130 0.94972 0.95104 1.76083 1.22555 1.21808 0.97117 1.78786 1.04754 1.06699 1.15263 1.47692 1.14022 1.33111 1.10551 0.64826 1.74899 1.24559 1.23275 0.93044 1.22394 1.00158 1.00441 0.84044 1.44202 1.19953 1.35659 1.11901 0.69142 0.91139 0.93344 0.93455 0.90418 0.92657 0.91188 0.93107 0.93302 0.92252 0.90177 0.90833 0.94226 0.95025 0.91236 0.83327 0.78239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 71.98 0.64 -2.80 16 2 C -0.09 -2.19 2.92 -10.80 -0.03 -2.22 16 3 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 4 C -0.12 -3.67 5.01 30.59 0.15 -3.51 16 5 C 0.12 4.17 5.14 86.38 0.44 4.62 16 6 N -0.60 -24.93 2.48 -830.81 -2.06 -26.99 16 7 C 0.23 10.17 4.73 85.63 0.40 10.57 16 8 C -0.56 -26.51 7.25 25.60 0.19 -26.32 16 9 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 10 C 0.04 1.86 5.05 84.65 0.43 2.28 16 11 N -0.90 -42.64 13.29 21.45 0.28 -42.35 16 12 Si 0.95 37.78 29.54 68.60 2.03 39.81 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 15 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 16 C 0.58 25.84 7.57 86.46 0.65 26.49 16 17 O -0.58 -27.42 16.45 -4.33 -0.07 -27.49 16 18 C -0.06 -2.50 6.58 40.08 0.26 -2.23 16 19 C -0.08 -3.28 10.57 22.53 0.24 -3.04 16 20 C -0.14 -4.93 6.10 -20.30 -0.12 -5.06 16 21 C 0.26 8.32 8.18 137.40 1.12 9.44 16 22 N -0.30 -9.82 12.54 -52.16 -0.65 -10.48 16 23 N -0.06 -1.54 13.47 37.02 0.50 -1.04 16 24 N -0.20 -3.92 7.90 37.02 0.29 -3.63 16 25 H 0.49 3.96 8.96 -347.54 -3.12 0.85 16 26 N -0.30 -7.92 12.39 -52.11 -0.65 -8.57 16 27 C 0.08 2.58 11.84 83.84 0.99 3.57 16 28 N -0.51 -20.22 4.72 -184.11 -0.87 -21.09 16 29 H 0.45 19.06 3.23 -92.71 -0.30 18.76 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.24 6.57 -2.38 -0.02 1.22 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 40 H 0.07 2.71 5.83 -2.39 -0.01 2.69 16 41 H 0.04 1.81 8.01 -2.39 -0.02 1.79 16 42 H 0.03 1.46 5.19 -2.39 -0.01 1.44 16 43 H 0.28 12.48 8.31 -92.71 -0.77 11.71 16 44 H 0.15 5.69 8.06 -2.91 -0.02 5.67 16 45 H 0.20 5.48 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -59.14 376.39 2.47 -56.67 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -2.37 Total: 35.63 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.04 Total: 9.52 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.16 Total: -114.15 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.07 Total: -27.49 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -59.14 2.47 -56.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820076090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.142 kcal (2) G-P(sol) polarization free energy of solvation -59.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds