Wall clock time and date at job start Tue Mar 31 2020 18:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00152 * 2 1 4 4 N 1.46504 * 109.47411 * 126.48446 * 3 2 1 5 5 C 1.46496 * 119.99965 * 87.82161 * 4 3 2 6 6 C 1.50702 * 109.47134 * 270.00357 * 5 4 3 7 7 H 1.07999 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99631 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00162 * 359.71887 * 8 6 5 11 11 H 1.48496 * 109.46969 * 90.00243 * 10 8 6 12 12 H 1.48504 * 109.47114 * 210.00365 * 10 8 6 13 13 H 1.48494 * 109.47057 * 330.00467 * 10 8 6 14 14 C 1.34772 * 119.99892 * 267.82478 * 4 3 2 15 15 O 1.21770 * 119.99926 * 174.90947 * 14 4 3 16 16 C 1.41517 * 120.00074 * 354.90888 * 14 4 3 17 17 C 1.34074 * 118.44165 * 280.75498 * 16 14 4 18 18 C 1.50695 * 118.85131 * 359.45595 * 17 16 14 19 19 N 1.37379 * 122.28715 * 179.43331 * 17 16 14 20 20 C 1.46507 * 121.32319 * 167.86294 * 19 17 16 21 21 C 1.38729 * 117.35795 * 347.88099 * 19 17 16 22 22 N 1.30234 * 130.95560 * 192.26430 * 21 19 17 23 23 N 1.28920 * 110.28723 * 179.70000 * 22 21 19 24 24 N 1.29411 * 110.38950 * 0.10868 * 23 22 21 25 25 N 1.35852 * 121.78778 * 12.23194 * 21 19 17 26 26 C 1.45707 * 123.75676 * 0.29217 * 25 21 19 27 27 H 1.09005 * 109.60611 * 228.50386 * 26 25 21 28 28 C 1.53000 * 109.29855 * 108.49889 * 26 25 21 29 29 H 1.08000 * 120.00122 * 185.43110 * 1 2 3 30 30 H 1.08000 * 119.99884 * 5.42611 * 1 2 3 31 31 H 1.07997 * 119.99757 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47314 * 6.48232 * 3 2 1 33 33 H 1.09001 * 109.47048 * 246.48238 * 3 2 1 34 34 H 1.08997 * 109.47261 * 150.00479 * 5 4 3 35 35 H 1.09003 * 109.47139 * 29.99802 * 5 4 3 36 36 H 0.97005 * 119.99774 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47462 * 84.66555 * 18 17 16 38 38 H 1.09006 * 109.46992 * 204.65862 * 18 17 16 39 39 H 1.08997 * 109.47758 * 324.65783 * 18 17 16 40 40 H 1.09002 * 109.46788 * 89.99547 * 20 19 17 41 41 H 1.08993 * 109.47206 * 209.99990 * 20 19 17 42 42 H 1.08998 * 109.47040 * 330.00178 * 20 19 17 43 43 H 1.09002 * 109.46716 * 302.79080 * 28 26 25 44 44 H 1.08994 * 109.47301 * 62.79635 * 28 26 25 45 45 H 1.09000 * 109.46687 * 182.79599 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0190 1.3173 1.1105 5 6 4.3650 0.7697 0.9249 6 6 4.3633 -0.6964 1.2738 7 1 3.4508 -1.1726 1.6007 8 6 5.5268 -1.4297 1.1756 9 7 5.5254 -2.7090 1.4806 10 14 7.1034 -0.6078 0.6027 11 1 7.8355 -0.0688 1.7767 12 1 7.9545 -1.6034 -0.0972 13 1 6.7734 0.5020 -0.3271 14 6 2.6596 1.8325 2.3029 15 8 3.4195 1.7594 3.2516 16 6 1.3992 2.4583 2.4525 17 6 1.2544 3.7160 2.0110 18 6 2.4389 4.4092 1.3889 19 7 0.0635 4.3944 2.1058 20 6 -0.0122 5.8375 1.8650 21 6 -1.0645 3.6588 2.4390 22 7 -2.3288 3.9684 2.3966 23 7 -3.0461 2.9740 2.7948 24 7 -2.2909 1.9736 3.1168 25 7 -0.9770 2.3841 2.9007 26 6 0.2826 1.6778 3.0945 27 1 0.2215 0.6893 2.6393 28 6 0.5563 1.5339 4.5929 29 1 -0.5400 -0.9311 0.0885 30 1 -0.5400 0.9311 -0.0884 31 1 1.8500 -0.9353 0.0004 32 1 1.3610 2.1303 0.1160 33 1 2.6004 1.4146 -0.9423 34 1 5.0644 1.2967 1.5737 35 1 4.6682 0.8953 -0.1146 36 1 6.3439 -3.2250 1.4112 37 1 2.5022 4.1438 0.3335 38 1 2.3203 5.4885 1.4855 39 1 3.3511 4.0970 1.8974 40 1 -0.2103 6.0197 0.8087 41 1 -0.8163 6.2642 2.4643 42 1 0.9339 6.3023 2.1426 43 1 0.5694 2.5205 5.0562 44 1 -0.2272 0.9287 5.0489 45 1 1.5217 1.0501 4.7410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848118999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:10 Heat of formation + Delta-G solvation = 157.319302 kcal Electronic energy + Delta-G solvation = -30463.390551 eV Core-core repulsion = 26521.081585 eV Total energy + Delta-G solvation = -3942.308966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.34599 -40.67566 -38.67627 -36.20045 -35.83519 -33.50927 -33.11542 -32.17568 -31.96192 -30.65415 -28.78178 -28.37723 -26.78746 -25.70483 -25.00228 -23.05545 -22.53451 -22.30039 -20.22659 -19.70594 -18.86963 -18.01143 -17.27665 -16.89853 -16.76143 -16.12277 -15.63528 -15.59128 -15.07226 -14.77364 -14.36427 -14.02130 -13.77508 -13.59273 -13.43704 -13.33030 -13.09080 -12.95382 -12.66768 -12.62557 -12.51489 -12.30158 -12.17510 -12.09758 -11.81413 -11.59783 -11.31786 -11.11411 -11.06516 -10.92590 -10.69247 -10.61779 -10.23019 -10.11272 -9.68814 -9.39524 -9.12699 -8.66346 -8.07817 -7.94218 -6.15594 -4.14949 0.83557 1.32293 1.46195 2.12982 2.29328 2.42520 3.01716 3.21966 3.27061 3.30041 3.75097 3.80382 4.27083 4.31822 4.35741 4.55849 4.70323 4.85796 4.89798 4.97719 5.09997 5.13023 5.14803 5.18559 5.22277 5.23351 5.28228 5.30357 5.48007 5.60198 5.62028 5.71248 5.75441 5.79601 5.88543 6.15056 6.20820 6.43103 6.55179 6.63814 6.76885 6.92373 6.94783 7.12742 7.50845 7.98769 8.36303 8.37787 8.67681 8.88215 9.43739 10.97399 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.004172 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.920640 B = 6709.961483 C = 7167.623576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.139 3.861 4 N -0.580 5.580 5 C 0.215 3.785 6 C -0.527 4.527 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.575 3.425 15 O -0.521 6.521 16 C -0.251 4.251 17 C 0.175 3.825 18 C -0.128 4.128 19 N -0.508 5.508 20 C 0.093 3.907 21 C 0.469 3.531 22 N -0.349 5.349 23 N -0.034 5.034 24 N -0.065 5.065 25 N -0.386 5.386 26 C 0.222 3.778 27 H 0.115 0.885 28 C -0.159 4.159 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 16.465 -2.435 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.166 4.166 3 C 0.015 3.985 4 N -0.311 5.311 5 C 0.095 3.905 6 C -0.566 4.566 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.360 3.640 15 O -0.397 6.397 16 C -0.264 4.264 17 C 0.074 3.926 18 C -0.185 4.185 19 N -0.217 5.217 20 C -0.047 4.047 21 C 0.104 3.896 22 N -0.208 5.208 23 N -0.029 5.029 24 N -0.052 5.052 25 N -0.189 5.189 26 C 0.120 3.880 27 H 0.133 0.867 28 C -0.217 4.217 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.721 16.130 -1.780 18.917 hybrid contribution 1.692 0.010 -0.404 1.740 sum -8.029 16.139 -2.184 18.158 Atomic orbital electron populations 1.23690 0.95818 1.01219 1.03487 1.23631 0.95725 1.00378 0.96887 1.20566 0.91833 0.95086 0.90974 1.48022 1.14950 1.57979 1.10113 1.19755 0.78436 0.95543 0.96773 1.21283 0.97749 0.91765 1.45788 0.90447 1.24851 0.98564 0.94704 0.94769 1.69888 1.28187 1.06882 1.48338 0.86898 0.84078 0.79526 0.79433 1.19937 1.21113 1.19115 1.15968 0.85210 0.79316 0.83474 1.90868 1.53110 1.57903 1.37838 1.19783 0.97884 0.96323 1.12436 1.19578 0.86246 0.91666 0.95064 1.21236 0.94337 1.00878 1.02089 1.42653 1.01330 1.08352 1.69387 1.22052 1.04538 0.74984 1.03166 1.21532 0.89594 0.83733 0.94734 1.74393 0.96961 1.22470 1.26958 1.78339 1.22303 0.93897 1.08405 1.82411 0.82839 1.18442 1.21494 1.51614 1.08408 1.11053 1.47782 1.19872 0.74311 0.95332 0.98498 0.86683 1.22237 1.04566 1.03168 0.91720 0.88385 0.90052 0.85206 0.91510 0.89671 0.94414 0.95017 0.92518 0.88858 0.89783 0.88516 0.90779 0.89258 0.89091 0.92096 0.91056 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 13.59 29.01 0.39 -2.46 16 2 C -0.15 -2.30 9.74 -36.03 -0.35 -2.66 16 3 C 0.14 2.02 5.75 -5.19 -0.03 1.99 16 4 N -0.58 -10.37 2.41 -179.89 -0.43 -10.80 16 5 C 0.22 4.66 4.24 -5.19 -0.02 4.64 16 6 C -0.53 -13.86 9.59 -34.44 -0.33 -14.19 16 7 H 0.08 2.24 7.63 -52.49 -0.40 1.84 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 10 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 14 C 0.57 10.24 4.60 -15.01 -0.07 10.17 16 15 O -0.52 -11.32 15.90 5.13 0.08 -11.24 16 16 C -0.25 -3.63 3.38 -104.89 -0.35 -3.98 16 17 C 0.18 2.02 5.55 -81.57 -0.45 1.57 16 18 C -0.13 -1.15 8.98 36.00 0.32 -0.82 16 19 N -0.51 -5.39 3.15 -120.68 -0.38 -5.77 16 20 C 0.09 0.59 10.08 59.85 0.60 1.19 16 21 C 0.47 6.34 8.34 -320.71 -2.67 3.66 16 22 N -0.35 -5.09 12.12 30.06 0.36 -4.72 16 23 N -0.03 -0.53 13.41 60.35 0.81 0.27 16 24 N -0.06 -1.01 13.99 60.35 0.84 -0.17 16 25 N -0.39 -5.60 3.72 -57.09 -0.21 -5.82 16 26 C 0.22 3.26 3.77 -69.56 -0.26 3.00 16 27 H 0.12 1.79 7.41 -51.93 -0.39 1.41 16 28 C -0.16 -2.25 9.41 37.16 0.35 -1.90 16 29 H 0.10 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.08 1.10 7.87 -52.49 -0.41 0.68 16 31 H 0.13 2.41 7.37 -52.49 -0.39 2.02 16 32 H 0.07 0.84 5.29 -51.93 -0.27 0.57 16 33 H 0.09 1.13 7.92 -51.93 -0.41 0.71 16 34 H 0.04 0.87 6.93 -51.93 -0.36 0.51 16 35 H 0.03 0.65 6.96 -51.93 -0.36 0.29 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 38 H 0.08 0.48 5.76 -51.93 -0.30 0.18 16 39 H 0.10 1.07 7.01 -51.93 -0.36 0.71 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.09 0.37 6.28 -51.93 -0.33 0.04 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.58 7.23 -51.93 -0.38 1.21 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -32.38 369.75 -6.27 -38.65 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.04 Total: 1.92 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.97 Total: 2.12 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 1.76 Total: -52.54 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.38 -6.27 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848118999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.965 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds