Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00152 * 2 1 4 4 N 1.46504 * 109.47411 * 126.48446 * 3 2 1 5 5 C 1.46496 * 119.99965 * 87.82161 * 4 3 2 6 6 C 1.50702 * 109.47134 * 270.00357 * 5 4 3 7 7 H 1.07999 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99631 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00162 * 359.71887 * 8 6 5 11 11 H 1.48496 * 109.46969 * 90.00243 * 10 8 6 12 12 H 1.48504 * 109.47114 * 210.00365 * 10 8 6 13 13 H 1.48494 * 109.47057 * 330.00467 * 10 8 6 14 14 C 1.34772 * 119.99892 * 267.82478 * 4 3 2 15 15 O 1.21770 * 119.99926 * 174.90947 * 14 4 3 16 16 C 1.41517 * 120.00074 * 354.90888 * 14 4 3 17 17 C 1.34074 * 118.44165 * 280.75498 * 16 14 4 18 18 C 1.50695 * 118.85131 * 359.45595 * 17 16 14 19 19 N 1.37379 * 122.28715 * 179.43331 * 17 16 14 20 20 C 1.46507 * 121.32319 * 167.86294 * 19 17 16 21 21 C 1.38729 * 117.35795 * 347.88099 * 19 17 16 22 22 N 1.30234 * 130.95560 * 192.26430 * 21 19 17 23 23 N 1.28920 * 110.28723 * 179.70000 * 22 21 19 24 24 N 1.29411 * 110.38950 * 0.10868 * 23 22 21 25 25 N 1.35852 * 121.78778 * 12.23194 * 21 19 17 26 26 C 1.45707 * 123.75676 * 0.29217 * 25 21 19 27 27 H 1.09005 * 109.60611 * 228.50386 * 26 25 21 28 28 C 1.53000 * 109.29855 * 108.49889 * 26 25 21 29 29 H 1.08000 * 120.00122 * 185.43110 * 1 2 3 30 30 H 1.08000 * 119.99884 * 5.42611 * 1 2 3 31 31 H 1.07997 * 119.99757 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47314 * 6.48232 * 3 2 1 33 33 H 1.09001 * 109.47048 * 246.48238 * 3 2 1 34 34 H 1.08997 * 109.47261 * 150.00479 * 5 4 3 35 35 H 1.09003 * 109.47139 * 29.99802 * 5 4 3 36 36 H 0.97005 * 119.99774 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47462 * 84.66555 * 18 17 16 38 38 H 1.09006 * 109.46992 * 204.65862 * 18 17 16 39 39 H 1.08997 * 109.47758 * 324.65783 * 18 17 16 40 40 H 1.09002 * 109.46788 * 89.99547 * 20 19 17 41 41 H 1.08993 * 109.47206 * 209.99990 * 20 19 17 42 42 H 1.08998 * 109.47040 * 330.00178 * 20 19 17 43 43 H 1.09002 * 109.46716 * 302.79080 * 28 26 25 44 44 H 1.08994 * 109.47301 * 62.79635 * 28 26 25 45 45 H 1.09000 * 109.46687 * 182.79599 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0190 1.3173 1.1105 5 6 4.3650 0.7697 0.9249 6 6 4.3633 -0.6964 1.2738 7 1 3.4508 -1.1726 1.6007 8 6 5.5268 -1.4297 1.1756 9 7 5.5254 -2.7090 1.4806 10 14 7.1034 -0.6078 0.6027 11 1 7.8355 -0.0688 1.7767 12 1 7.9545 -1.6034 -0.0972 13 1 6.7734 0.5020 -0.3271 14 6 2.6596 1.8325 2.3029 15 8 3.4195 1.7594 3.2516 16 6 1.3992 2.4583 2.4525 17 6 1.2544 3.7160 2.0110 18 6 2.4389 4.4092 1.3889 19 7 0.0635 4.3944 2.1058 20 6 -0.0122 5.8375 1.8650 21 6 -1.0645 3.6588 2.4390 22 7 -2.3288 3.9684 2.3966 23 7 -3.0461 2.9740 2.7948 24 7 -2.2909 1.9736 3.1168 25 7 -0.9770 2.3841 2.9007 26 6 0.2826 1.6778 3.0945 27 1 0.2215 0.6893 2.6393 28 6 0.5563 1.5339 4.5929 29 1 -0.5400 -0.9311 0.0885 30 1 -0.5400 0.9311 -0.0884 31 1 1.8500 -0.9353 0.0004 32 1 1.3610 2.1303 0.1160 33 1 2.6004 1.4146 -0.9423 34 1 5.0644 1.2967 1.5737 35 1 4.6682 0.8953 -0.1146 36 1 6.3439 -3.2250 1.4112 37 1 2.5022 4.1438 0.3335 38 1 2.3203 5.4885 1.4855 39 1 3.3511 4.0970 1.8974 40 1 -0.2103 6.0197 0.8087 41 1 -0.8163 6.2642 2.4643 42 1 0.9339 6.3023 2.1426 43 1 0.5694 2.5205 5.0562 44 1 -0.2272 0.9287 5.0489 45 1 1.5217 1.0501 4.7410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848118999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = 137.678250 kcal Electronic energy + Delta-G solvation = -30464.242251 eV Core-core repulsion = 26521.081585 eV Total energy + Delta-G solvation = -3943.160665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.46280 -41.87814 -39.84443 -37.39268 -37.13572 -35.06066 -34.37720 -33.80722 -33.09829 -31.67231 -30.25885 -29.39722 -27.80772 -26.91725 -26.28180 -24.29223 -23.98292 -23.38386 -21.54223 -20.94550 -19.91671 -19.32074 -18.88863 -18.34396 -17.83640 -17.41878 -16.88713 -16.71074 -16.18005 -15.98552 -15.86120 -15.22843 -14.99343 -14.76123 -14.59570 -14.46810 -14.31825 -14.02353 -13.91273 -13.80153 -13.71910 -13.70545 -13.33719 -13.26934 -12.89780 -12.60845 -12.59928 -12.44490 -12.33992 -12.31736 -12.22469 -11.93411 -11.80969 -11.61233 -11.19248 -10.92065 -10.75218 -10.35873 -9.51416 -9.05646 -8.25734 -6.29825 -0.27577 0.26758 0.41012 1.05314 1.17646 1.24315 1.38743 1.42127 1.49704 1.72155 2.37187 2.42520 2.79072 3.09293 3.27855 3.38301 3.58132 3.72474 3.84470 3.93682 4.03606 4.09265 4.11901 4.18286 4.30069 4.37310 4.40820 4.45583 4.57810 4.60339 4.62442 4.73654 4.79047 4.79831 4.85077 4.94313 4.99575 5.02203 5.03846 5.50501 5.57827 5.60716 5.64666 5.66488 5.73289 6.29832 6.59545 6.73120 7.22401 7.23802 7.37041 8.90971 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.004172 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.920640 B = 6709.961483 C = 7167.623576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 C 0.142 3.858 4 N -0.582 5.582 5 C 0.223 3.777 6 C -0.525 4.525 7 H 0.031 0.969 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.229 1.229 14 C 0.585 3.415 15 O -0.569 6.569 16 C -0.290 4.290 17 C 0.211 3.789 18 C -0.131 4.131 19 N -0.495 5.495 20 C 0.079 3.921 21 C 0.468 3.532 22 N -0.350 5.350 23 N -0.043 5.043 24 N -0.081 5.081 25 N -0.388 5.388 26 C 0.230 3.770 27 H 0.097 0.903 28 C -0.152 4.152 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.265 0.735 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 20.657 -4.410 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.186 4.186 3 C 0.020 3.980 4 N -0.311 5.311 5 C 0.101 3.899 6 C -0.563 4.563 7 H 0.049 0.951 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.766 3.234 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.152 1.152 14 C 0.373 3.627 15 O -0.449 6.449 16 C -0.303 4.303 17 C 0.108 3.892 18 C -0.188 4.188 19 N -0.204 5.204 20 C -0.059 4.059 21 C 0.103 3.897 22 N -0.209 5.209 23 N -0.039 5.039 24 N -0.068 5.068 25 N -0.190 5.190 26 C 0.127 3.873 27 H 0.115 0.885 28 C -0.210 4.210 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.833 20.377 -3.791 22.941 hybrid contribution 1.549 -1.255 0.245 2.009 sum -8.284 19.122 -3.546 21.139 Atomic orbital electron populations 1.23732 0.95108 1.01924 1.01031 1.23420 0.96270 0.99654 0.99262 1.20747 0.91707 0.95004 0.90549 1.47999 1.14318 1.57421 1.11378 1.19473 0.80695 0.92193 0.97557 1.21550 0.95954 0.94347 1.44472 0.95095 1.25836 1.02716 0.95177 0.95129 1.70069 1.29242 1.08974 1.50770 0.85786 0.78816 0.79351 0.79422 1.20227 1.21134 1.15159 1.16282 0.85693 0.78263 0.82469 1.90832 1.54930 1.59768 1.39352 1.19276 0.96326 0.97819 1.16869 1.19919 0.87052 0.90445 0.91791 1.21425 0.91747 1.03222 1.02399 1.43128 0.99914 1.09694 1.67661 1.22543 1.06469 0.71974 1.04922 1.21820 0.90207 0.83497 0.94142 1.74357 0.97269 1.22153 1.27149 1.78327 1.22739 0.94203 1.08604 1.82404 0.83385 1.18810 1.22221 1.51516 1.07917 1.11563 1.48048 1.19630 0.74697 0.94793 0.98193 0.88544 1.22140 1.03395 1.03234 0.92242 0.88324 0.88489 0.89121 0.88825 0.87669 0.95215 0.92547 0.92646 0.86926 0.85581 0.90445 0.88398 0.89081 0.86061 0.91561 0.90558 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 13.59 67.78 0.92 -4.01 16 2 C -0.17 -5.27 9.74 25.64 0.25 -5.02 16 3 C 0.14 3.88 5.75 85.63 0.49 4.37 16 4 N -0.58 -20.44 2.41 -841.25 -2.03 -22.47 16 5 C 0.22 9.52 4.24 85.63 0.36 9.88 16 6 C -0.52 -28.61 9.59 25.60 0.25 -28.36 16 7 H 0.03 1.92 7.63 -2.91 -0.02 1.90 16 8 C 0.01 0.49 5.47 84.66 0.46 0.95 16 9 N -0.95 -58.48 13.96 21.45 0.30 -58.19 16 10 Si 0.94 41.59 27.47 68.60 1.88 43.47 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 14 C 0.59 20.81 4.60 85.05 0.39 21.20 16 15 O -0.57 -25.44 15.90 -4.57 -0.07 -25.51 16 16 C -0.29 -8.04 3.38 -20.04 -0.07 -8.10 16 17 C 0.21 4.15 5.55 40.74 0.23 4.38 16 18 C -0.13 -1.73 8.98 71.23 0.64 -1.09 16 19 N -0.50 -8.54 3.15 -535.72 -1.69 -10.22 16 20 C 0.08 0.58 10.08 127.77 1.29 1.87 16 21 C 0.47 11.44 8.34 260.75 2.17 13.61 16 22 N -0.35 -9.40 12.12 -58.81 -0.71 -10.11 16 23 N -0.04 -1.30 13.41 37.02 0.50 -0.81 16 24 N -0.08 -2.47 13.99 37.02 0.52 -1.96 16 25 N -0.39 -10.82 3.72 -334.54 -1.24 -12.06 16 26 C 0.23 6.73 3.77 44.36 0.17 6.90 16 27 H 0.10 3.12 7.41 -2.38 -0.02 3.10 16 28 C -0.15 -4.45 9.41 71.98 0.68 -3.77 16 29 H 0.10 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.10 2.39 7.87 -2.91 -0.02 2.36 16 31 H 0.09 3.61 7.37 -2.91 -0.02 3.59 16 32 H 0.09 2.05 5.29 -2.39 -0.01 2.04 16 33 H 0.11 2.45 7.92 -2.39 -0.02 2.43 16 34 H 0.03 1.34 6.93 -2.39 -0.02 1.32 16 35 H 0.06 2.16 6.96 -2.39 -0.02 2.14 16 36 H 0.26 15.30 8.31 -92.70 -0.77 14.52 16 37 H 0.11 1.18 7.85 -2.38 -0.02 1.17 16 38 H 0.13 0.61 5.76 -2.38 -0.01 0.60 16 39 H 0.08 1.46 7.01 -2.39 -0.02 1.45 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 42 H 0.12 0.20 6.28 -2.39 -0.02 0.19 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.08 2.61 7.23 -2.39 -0.02 2.60 16 Total: -1.00 -76.07 369.75 6.64 -69.43 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.96 Total: 15.62 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 8.23 Total: 12.80 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.36 Total: -115.81 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Total: -76.07 6.64 -69.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848118999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.104 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds