Wall clock time and date at job start Tue Mar 31 2020 17:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48501 * 109.47503 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46563 * 299.99954 * 3 2 1 6 6 H 1.48502 * 109.47133 * 59.99272 * 3 2 1 7 7 C 1.37882 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00231 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47618 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99662 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00365 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99986 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46790 * 180.02562 * 16 15 13 18 18 N 1.46502 * 109.46790 * 179.97438 * 17 16 15 19 19 C 1.36319 * 126.27641 * 265.02213 * 18 17 16 20 20 N 1.30144 * 109.97803 * 180.02562 * 19 18 17 21 21 C 1.35471 * 109.44118 * 359.97438 * 20 19 18 22 22 C 1.37201 * 126.28160 * 85.02248 * 18 17 16 23 23 N 1.32888 * 134.91593 * 359.97438 * 22 18 17 24 24 C 1.31647 * 120.63699 * 180.02562 * 23 22 18 25 25 N 1.32044 * 122.46496 * 359.97438 * 24 23 22 26 26 C 1.32907 * 121.19258 * 0.02562 * 25 24 23 27 27 N 1.38384 * 120.77168 * 179.97438 * 26 25 24 28 28 H 0.97005 * 119.99858 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47339 * 59.99299 * 9 7 2 30 30 H 1.09006 * 109.47132 * 299.99681 * 9 7 2 31 31 H 1.08993 * 109.47273 * 59.99546 * 10 9 7 32 32 H 1.09006 * 109.46717 * 299.99766 * 10 9 7 33 33 H 1.09002 * 109.47409 * 59.99986 * 11 10 9 34 34 H 1.08994 * 109.47718 * 299.99355 * 11 10 9 35 35 H 1.08997 * 109.47356 * 59.99644 * 12 11 10 36 36 H 1.09000 * 109.47260 * 299.99767 * 12 11 10 37 37 H 0.97001 * 119.99573 * 359.97438 * 15 13 12 38 38 H 1.08997 * 109.47350 * 59.99363 * 16 15 13 39 39 H 1.09000 * 109.46691 * 299.99838 * 16 15 13 40 40 H 1.08992 * 109.47545 * 60.00207 * 17 16 15 41 41 H 1.09000 * 109.47272 * 299.99360 * 17 16 15 42 42 H 1.07997 * 125.01216 * 0.02562 * 19 18 17 43 43 H 1.08007 * 118.76543 * 180.28328 * 24 23 22 44 44 H 0.96996 * 120.00498 * 0.02562 * 27 26 25 45 45 H 0.96999 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 6 2.4743 -6.1500 0.0031 13 6 1.7209 -7.4552 0.0031 14 8 0.5080 -7.4551 0.0031 15 7 2.3947 -8.6224 0.0042 16 6 1.6622 -9.8911 0.0047 17 6 2.6564 -11.0540 0.0065 18 7 1.9239 -12.3227 0.0077 19 6 1.6027 -13.0676 1.1033 20 7 0.9513 -14.1342 0.7404 21 6 0.8129 -14.1413 -0.6072 22 6 1.4353 -12.9791 -1.0936 23 7 1.4385 -12.7474 -2.4021 24 6 0.8673 -13.5924 -3.2344 25 7 0.2708 -14.6969 -2.8248 26 6 0.2173 -15.0126 -1.5349 27 7 -0.4106 -16.1722 -1.1152 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6047 -0.8878 33 1 0.8539 -5.0454 -0.8877 34 1 0.8532 -5.0442 0.8922 35 1 3.1010 -6.0919 0.8930 36 1 3.1010 -6.0928 -0.8869 37 1 3.3647 -8.6223 0.0045 38 1 1.0358 -9.9494 -0.8854 39 1 1.0352 -9.9482 0.8945 40 1 3.2824 -10.9955 0.8969 41 1 3.2837 -10.9971 -0.8831 42 1 1.8520 -12.8105 2.1222 43 1 0.8918 -13.3765 -4.2924 44 1 -0.8179 -16.7657 -1.7653 45 1 -0.4427 -16.3918 -0.1710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862971662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:34 Heat of formation + Delta-G solvation = 43.288692 kcal Electronic energy + Delta-G solvation = -26260.715588 eV Core-core repulsion = 22313.461884 eV Total energy + Delta-G solvation = -3947.253704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.99339 -39.91592 -39.59585 -36.48541 -35.87566 -34.87928 -33.81496 -32.62909 -32.39111 -30.25397 -29.70376 -28.94395 -25.80209 -24.67175 -24.37235 -23.54702 -22.19373 -21.31550 -20.43698 -19.98886 -19.00511 -18.81188 -17.31522 -17.10866 -16.88292 -16.33733 -16.17675 -16.05552 -15.81660 -15.24559 -15.03461 -14.65174 -14.47143 -14.38286 -14.26101 -13.78209 -13.64392 -12.80676 -12.62477 -12.50375 -12.44224 -12.06603 -11.87720 -11.71499 -11.60264 -11.00116 -10.85478 -10.55652 -10.49117 -10.45740 -10.42606 -9.94692 -9.75469 -9.62660 -9.48689 -9.36678 -9.23484 -8.97627 -8.37757 -8.30868 -5.95382 -3.97924 0.43435 0.94339 1.67258 2.24175 2.63065 2.82804 2.99382 3.33009 3.40243 3.44043 3.52443 3.56291 3.70274 3.90025 4.12485 4.19149 4.34161 4.48832 4.60621 4.61199 4.81436 5.03642 5.25365 5.27608 5.33673 5.40155 5.43804 5.47169 5.81615 5.95978 6.08032 6.11880 6.22386 6.28321 6.39761 6.52865 6.65694 6.82562 7.00497 7.12839 7.18457 7.19518 7.26954 7.74272 7.89772 7.90220 8.05947 8.14721 8.47726 9.10049 9.65838 11.15935 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031809 B = 0.001469 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.035563 B =19057.946825 C =19327.238275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.514 3.486 14 O -0.530 6.530 15 N -0.737 5.737 16 C 0.106 3.894 17 C 0.104 3.896 18 N -0.469 5.469 19 C 0.254 3.746 20 N -0.463 5.463 21 C -0.112 4.112 22 C 0.304 3.696 23 N -0.556 5.556 24 C 0.365 3.635 25 N -0.593 5.593 26 C 0.508 3.492 27 N -0.819 5.819 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.224 0.776 43 H 0.205 0.795 44 H 0.410 0.590 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -35.233 -0.031 35.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.302 3.698 14 O -0.405 6.405 15 N -0.392 5.392 16 C -0.019 4.019 17 C -0.019 4.019 18 N -0.162 5.162 19 C -0.032 4.032 20 N -0.181 5.181 21 C -0.239 4.239 22 C 0.063 3.937 23 N -0.281 5.281 24 C 0.074 3.926 25 N -0.323 5.323 26 C 0.254 3.746 27 N -0.361 5.361 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.241 0.759 43 H 0.222 0.778 44 H 0.241 0.759 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.571 -35.375 -0.392 35.813 hybrid contribution 1.036 1.114 0.498 1.601 sum 6.607 -34.261 0.106 34.892 Atomic orbital electron populations 1.69985 1.06054 1.26393 1.50985 1.25044 0.94833 0.99240 0.95457 0.86558 0.80074 0.83931 0.77546 1.19778 1.21057 1.21060 1.21321 0.93022 0.91188 1.50327 0.92687 1.19108 0.94081 0.91302 0.97343 1.21648 0.99079 0.93957 1.00094 1.21465 0.97036 0.92719 1.03013 1.21796 1.00102 0.91642 1.04131 1.21163 0.88469 0.85378 0.74802 1.90736 1.14299 1.87522 1.47963 1.45886 1.10227 1.05127 1.78005 1.21523 0.94506 0.82191 1.03729 1.22007 0.94013 0.79951 1.05890 1.44941 1.46399 1.19919 1.04967 1.25430 0.97103 0.87688 0.93019 1.70217 1.17752 1.20382 1.09732 1.19666 1.11909 0.99853 0.92447 1.18736 0.95558 0.91011 0.88398 1.67299 1.26269 1.34715 0.99820 1.24503 0.85917 0.82861 0.99331 1.68058 1.27918 1.23173 1.13169 1.17793 0.84829 0.84933 0.87043 1.42219 1.59900 1.21793 1.12188 0.93102 0.96564 0.96587 0.93454 0.93430 0.91772 0.91790 0.88981 0.88954 0.76431 0.90662 0.90915 0.87533 0.87804 0.75938 0.77827 0.75949 0.75007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 13 C 0.51 6.70 7.83 -10.98 -0.09 6.62 16 14 O -0.53 -9.53 15.98 5.55 0.09 -9.44 16 15 N -0.74 -6.17 5.56 -60.29 -0.33 -6.50 16 16 C 0.11 0.87 6.00 -4.04 -0.02 0.85 16 17 C 0.10 0.52 6.28 -4.04 -0.03 0.50 16 18 N -0.47 -3.51 2.79 -117.63 -0.33 -3.83 16 19 C 0.25 1.64 12.51 -89.49 -1.12 0.52 16 20 N -0.46 -4.19 11.28 -11.85 -0.13 -4.32 16 21 C -0.11 -1.14 7.17 -84.54 -0.61 -1.75 16 22 C 0.30 3.14 8.05 -155.80 -1.25 1.89 16 23 N -0.56 -5.86 10.47 -13.90 -0.15 -6.01 16 24 C 0.37 3.27 12.25 -92.07 -1.13 2.14 16 25 N -0.59 -5.62 10.45 -13.61 -0.14 -5.76 16 26 C 0.51 4.70 7.87 -154.66 -1.22 3.49 16 27 N -0.82 -4.66 9.05 31.37 0.28 -4.38 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 1.90 8.47 -40.82 -0.35 1.55 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.19 8.13 -51.93 -0.42 -0.24 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.21 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.41 1.54 8.95 -40.82 -0.37 1.18 16 45 H 0.42 1.89 8.85 -40.82 -0.36 1.53 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -39.29 388.62 -12.09 -51.38 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.53 Total: -1.70 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -6.43 Total: -5.35 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.06 Total: -57.58 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.29 -12.09 -51.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862971662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.672 kcal (2) G-P(sol) polarization free energy of solvation -39.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds