Wall clock time and date at job start Tue Mar 31 2020 16:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00182 * 2 1 4 4 C 1.50700 * 109.47142 * 270.00027 * 3 2 1 5 5 H 1.08006 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99842 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00321 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46748 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47148 * 119.99418 * 8 6 4 11 11 H 1.48493 * 109.46904 * 240.00003 * 8 6 4 12 12 C 1.34774 * 119.99557 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99944 * 179.97438 * 12 2 1 14 14 C 1.50709 * 120.00356 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47067 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47200 * 179.97438 * 15 14 12 17 17 C 1.46893 * 111.00208 * 170.00295 * 16 15 14 18 18 C 1.53244 * 109.33841 * 187.25587 * 17 16 15 19 19 N 1.47079 * 108.52073 * 306.16452 * 18 17 16 20 20 S 1.65597 * 120.88568 * 231.18686 * 19 18 17 21 21 C 1.81401 * 108.33323 * 180.02562 * 20 19 18 22 22 N 1.49356 * 108.73127 * 297.53804 * 20 19 18 23 23 O 1.42105 * 108.33053 * 55.06606 * 20 19 18 24 24 C 1.47083 * 118.23171 * 51.46497 * 19 18 17 25 25 C 1.46905 * 111.00021 * 294.30515 * 16 15 14 26 26 H 1.08999 * 109.47525 * 270.00440 * 1 2 3 27 27 H 1.08997 * 109.47085 * 30.00015 * 1 2 3 28 28 H 1.08998 * 109.47336 * 150.00005 * 1 2 3 29 29 H 1.08997 * 109.47105 * 29.99843 * 3 2 1 30 30 H 1.09003 * 109.46918 * 149.99870 * 3 2 1 31 31 H 0.97003 * 119.99506 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46748 * 60.00165 * 14 12 2 33 33 H 1.09002 * 109.46620 * 300.00055 * 14 12 2 34 34 H 1.09002 * 109.47046 * 60.00539 * 15 14 12 35 35 H 1.08998 * 109.47324 * 300.00066 * 15 14 12 36 36 H 1.09003 * 109.49557 * 67.29458 * 17 16 15 37 37 H 1.08997 * 109.49208 * 307.21353 * 17 16 15 38 38 H 1.09007 * 109.62556 * 186.45996 * 18 17 16 39 39 H 1.08996 * 109.79277 * 65.97479 * 18 17 16 40 40 H 1.09002 * 109.46703 * 299.99948 * 21 20 19 41 41 H 1.08992 * 109.46774 * 60.00226 * 21 20 19 42 42 H 1.09004 * 109.46555 * 180.02562 * 21 20 19 43 43 H 0.96996 * 119.99630 * 297.52371 * 22 20 19 44 44 H 1.08996 * 109.63448 * 68.25096 * 24 19 18 45 45 H 1.09003 * 109.62234 * 188.83271 * 24 19 18 46 46 H 1.08999 * 109.49375 * 292.70714 * 25 16 15 47 47 H 1.09009 * 109.49311 * 52.75708 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5543 3.6174 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.8598 2.4170 -4.3673 10 1 2.8007 4.7381 -3.6666 11 1 4.9002 3.5245 -3.6679 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3852 -2.4724 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 2.5512 -6.0388 -0.2369 18 6 1.7288 -7.3203 -0.4091 19 7 0.8435 -7.4674 0.7561 20 16 0.7941 -8.8836 1.6128 21 6 -0.4006 -8.6916 2.9643 22 7 0.3122 -9.9728 0.7116 23 8 2.1152 -9.2001 2.0296 24 6 -0.0015 -6.3251 1.1364 25 6 0.8933 -5.0808 1.2514 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1383 0.5139 31 1 4.0318 4.4430 -0.8504 32 1 0.7590 -2.5303 -0.8897 33 1 0.7583 -2.5298 0.8903 34 1 3.0061 -3.5776 0.8906 35 1 3.0061 -3.5776 -0.8894 36 1 3.2249 -6.1503 0.6128 37 1 3.1323 -5.8553 -1.1406 38 1 2.3976 -8.1789 -0.4715 39 1 1.1305 -7.2556 -1.3178 40 1 -0.0871 -7.8735 3.6128 41 1 -1.3846 -8.4709 2.5507 42 1 -0.4475 -9.6150 3.5416 43 1 -0.5772 -9.9264 0.3274 44 1 -0.7632 -6.1630 0.3738 45 1 -0.4774 -6.5254 2.0964 46 1 1.5900 -5.2056 2.0803 47 1 0.2723 -4.2023 1.4272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879945352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:20 Heat of formation + Delta-G solvation = -13.275100 kcal Electronic energy + Delta-G solvation = -26948.313081 eV Core-core repulsion = 23101.757787 eV Total energy + Delta-G solvation = -3846.555294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.167 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -39.57560 -38.71166 -36.61329 -35.33592 -34.75052 -32.67108 -32.52386 -31.94443 -30.85612 -29.67922 -27.94971 -26.57297 -25.63107 -24.15417 -23.39826 -21.75092 -20.81066 -19.04492 -18.40430 -18.10869 -16.79407 -16.57706 -16.48343 -15.93124 -15.61629 -15.46031 -15.19301 -14.87959 -14.70419 -14.67637 -14.25479 -14.10175 -13.84103 -13.67369 -13.29987 -12.70811 -12.61634 -12.38133 -12.23204 -12.14757 -12.10882 -12.03828 -11.82177 -11.65789 -11.46007 -11.25090 -11.18158 -10.91797 -10.76503 -10.59287 -10.25453 -10.17640 -9.74657 -9.63041 -9.38505 -8.93330 -8.50706 -8.45925 -7.67089 -6.06487 -4.11214 -0.38665 2.33603 3.24644 3.28236 3.34890 3.37548 3.43087 3.50249 3.69134 3.98898 4.10936 4.34263 4.41967 4.43586 4.56792 4.67637 4.86541 4.91658 4.98652 5.11144 5.13339 5.17277 5.26141 5.30464 5.34913 5.36251 5.51543 5.57941 5.66293 5.72961 5.74313 5.88068 6.01632 6.04463 6.07535 6.18846 6.83084 6.83850 6.88392 7.03000 7.41614 7.51614 7.90010 8.21231 8.39192 8.88253 9.06967 9.54095 11.01639 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.002092 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.399469 B =13379.141276 C =13699.236319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.503 3.497 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.072 3.928 16 N -0.536 5.536 17 C 0.040 3.960 18 C 0.142 3.858 19 N -1.010 6.010 20 S 2.506 3.494 21 C -0.668 4.668 22 N -1.236 6.236 23 O -0.930 6.930 24 C 0.112 3.888 25 C 0.034 3.966 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.382 0.618 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 -22.565 6.068 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.289 3.711 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.055 4.055 16 N -0.260 5.260 17 C -0.089 4.089 18 C 0.017 3.983 19 N -0.843 5.843 20 S 2.597 3.403 21 C -0.821 4.821 22 N -1.055 6.055 23 O -0.910 6.910 24 C -0.015 4.015 25 C -0.096 4.096 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.204 0.796 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.057 0.943 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.266 -23.118 5.873 26.822 hybrid contribution -0.527 1.227 -0.009 1.335 sum -12.793 -21.892 5.864 26.025 Atomic orbital electron populations 1.21632 0.81460 1.02659 1.00272 1.48166 1.06186 1.07902 1.71301 1.19289 0.92536 0.78142 0.97539 1.21463 1.36366 1.06232 0.92297 0.92419 1.24954 0.95381 0.96418 0.97485 1.69947 1.38430 1.14374 1.30681 0.86433 0.78100 0.78294 0.84537 1.19787 1.20964 1.20866 1.20298 0.88082 0.85168 0.77505 1.90674 1.14007 1.87353 1.50282 1.21652 0.99243 0.92727 1.03872 1.21830 0.94585 0.86395 1.02739 1.61852 1.27889 1.02286 1.34023 1.22475 0.94090 0.90373 1.02011 1.21418 0.91977 0.97440 0.87479 1.58225 1.53904 1.29651 1.42562 1.10626 0.80149 0.71246 0.78299 1.30640 1.18326 1.11660 1.21506 1.72874 1.37006 1.39515 1.56080 1.93535 1.33632 1.80817 1.83020 1.21825 0.93216 0.85995 1.00415 1.22612 0.97386 0.98274 0.91319 0.93899 0.90827 0.92311 0.95069 0.93899 0.92769 0.88610 0.89913 0.93848 0.89537 0.94000 0.89170 0.89607 0.90213 0.86282 0.85651 0.84901 0.79585 0.89815 0.90122 0.94277 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.85 0.61 1.86 16 2 N -0.60 -12.43 2.86 -182.95 -0.52 -12.95 16 3 C 0.24 6.33 5.16 -5.20 -0.03 6.31 16 4 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.50 10.00 7.67 -10.98 -0.08 9.92 16 13 O -0.54 -13.36 15.56 5.55 0.09 -13.28 16 14 C -0.13 -1.80 4.18 -27.88 -0.12 -1.92 16 15 C 0.07 0.94 4.25 -3.83 -0.02 0.92 16 16 N -0.54 -5.36 4.63 -234.02 -1.08 -6.45 16 17 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 18 C 0.14 1.14 6.73 -3.60 -0.02 1.12 16 19 N -1.01 -6.69 3.38 -112.97 -0.38 -7.07 16 20 S 2.51 17.99 5.36 -107.50 -0.58 17.41 16 21 C -0.67 -2.06 9.26 101.05 0.94 -1.13 16 22 N -1.24 -10.71 14.07 60.35 0.85 -9.86 16 23 O -0.93 -12.02 18.13 -35.23 -0.64 -12.66 16 24 C 0.11 0.55 6.67 -3.36 -0.02 0.53 16 25 C 0.03 0.26 5.48 -3.46 -0.02 0.24 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 28 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 33 H 0.08 0.90 6.37 -51.93 -0.33 0.57 16 34 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.82 7.99 -51.93 -0.41 0.41 16 38 H 0.09 0.72 7.93 -51.92 -0.41 0.31 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.12 0.26 7.67 -51.92 -0.40 -0.14 16 41 H 0.12 0.08 8.00 -51.93 -0.42 -0.34 16 42 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 43 H 0.38 2.26 8.92 -21.58 -0.19 2.06 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.15 5.70 -51.93 -0.30 -0.15 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.61 6.16 -51.92 -0.32 0.29 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -39.17 385.36 -7.58 -46.75 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.63 Total: -3.34 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.80 Total: 4.70 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.40 Total: -62.14 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.55 Total: -25.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 17.99 SS G_CDS: -0.58 Total: 17.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.17 -7.58 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879945352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.471 kcal (2) G-P(sol) polarization free energy of solvation -39.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds