Wall clock time and date at job start Tue Mar 31 2020 16:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00182 * 2 1 4 4 C 1.50700 * 109.47142 * 270.00027 * 3 2 1 5 5 H 1.08006 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99842 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00321 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46748 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47148 * 119.99418 * 8 6 4 11 11 H 1.48493 * 109.46904 * 240.00003 * 8 6 4 12 12 C 1.34774 * 119.99557 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99944 * 179.97438 * 12 2 1 14 14 C 1.50709 * 120.00356 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47067 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47200 * 179.97438 * 15 14 12 17 17 C 1.46893 * 111.00208 * 170.00295 * 16 15 14 18 18 C 1.53244 * 109.33841 * 187.25587 * 17 16 15 19 19 N 1.47079 * 108.52073 * 306.16452 * 18 17 16 20 20 S 1.65597 * 120.88568 * 231.18686 * 19 18 17 21 21 C 1.81401 * 108.33323 * 180.02562 * 20 19 18 22 22 N 1.49356 * 108.73127 * 297.53804 * 20 19 18 23 23 O 1.42105 * 108.33053 * 55.06606 * 20 19 18 24 24 C 1.47083 * 118.23171 * 51.46497 * 19 18 17 25 25 C 1.46905 * 111.00021 * 294.30515 * 16 15 14 26 26 H 1.08999 * 109.47525 * 270.00440 * 1 2 3 27 27 H 1.08997 * 109.47085 * 30.00015 * 1 2 3 28 28 H 1.08998 * 109.47336 * 150.00005 * 1 2 3 29 29 H 1.08997 * 109.47105 * 29.99843 * 3 2 1 30 30 H 1.09003 * 109.46918 * 149.99870 * 3 2 1 31 31 H 0.97003 * 119.99506 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46748 * 60.00165 * 14 12 2 33 33 H 1.09002 * 109.46620 * 300.00055 * 14 12 2 34 34 H 1.09002 * 109.47046 * 60.00539 * 15 14 12 35 35 H 1.08998 * 109.47324 * 300.00066 * 15 14 12 36 36 H 1.09003 * 109.49557 * 67.29458 * 17 16 15 37 37 H 1.08997 * 109.49208 * 307.21353 * 17 16 15 38 38 H 1.09007 * 109.62556 * 186.45996 * 18 17 16 39 39 H 1.08996 * 109.79277 * 65.97479 * 18 17 16 40 40 H 1.09002 * 109.46703 * 299.99948 * 21 20 19 41 41 H 1.08992 * 109.46774 * 60.00226 * 21 20 19 42 42 H 1.09004 * 109.46555 * 180.02562 * 21 20 19 43 43 H 0.96996 * 119.99630 * 297.52371 * 22 20 19 44 44 H 1.08996 * 109.63448 * 68.25096 * 24 19 18 45 45 H 1.09003 * 109.62234 * 188.83271 * 24 19 18 46 46 H 1.08999 * 109.49375 * 292.70714 * 25 16 15 47 47 H 1.09009 * 109.49311 * 52.75708 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5543 3.6174 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.8598 2.4170 -4.3673 10 1 2.8007 4.7381 -3.6666 11 1 4.9002 3.5245 -3.6679 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3852 -2.4724 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 2.5512 -6.0388 -0.2369 18 6 1.7288 -7.3203 -0.4091 19 7 0.8435 -7.4674 0.7561 20 16 0.7941 -8.8836 1.6128 21 6 -0.4006 -8.6916 2.9643 22 7 0.3122 -9.9728 0.7116 23 8 2.1152 -9.2001 2.0296 24 6 -0.0015 -6.3251 1.1364 25 6 0.8933 -5.0808 1.2514 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1383 0.5139 31 1 4.0318 4.4430 -0.8504 32 1 0.7590 -2.5303 -0.8897 33 1 0.7583 -2.5298 0.8903 34 1 3.0061 -3.5776 0.8906 35 1 3.0061 -3.5776 -0.8894 36 1 3.2249 -6.1503 0.6128 37 1 3.1323 -5.8553 -1.1406 38 1 2.3976 -8.1789 -0.4715 39 1 1.1305 -7.2556 -1.3178 40 1 -0.0871 -7.8735 3.6128 41 1 -1.3846 -8.4709 2.5507 42 1 -0.4475 -9.6150 3.5416 43 1 -0.5772 -9.9264 0.3274 44 1 -0.7632 -6.1630 0.3738 45 1 -0.4774 -6.5254 2.0964 46 1 1.5900 -5.2056 2.0803 47 1 0.2723 -4.2023 1.4272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879945352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:15 Heat of formation + Delta-G solvation = -47.066295 kcal Electronic energy + Delta-G solvation = -26949.778377 eV Core-core repulsion = 23101.757787 eV Total energy + Delta-G solvation = -3848.020590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.167 amu Computer time = 5.76 seconds Orbital eigenvalues (eV) -40.80514 -39.77160 -37.36375 -36.65209 -35.94933 -34.72769 -33.08750 -32.60800 -31.90498 -30.02610 -29.71381 -27.57776 -27.04836 -25.06254 -24.73776 -23.02087 -21.52068 -19.89338 -19.61179 -18.76157 -18.68682 -17.80941 -17.34892 -17.09573 -16.85952 -16.45409 -16.26459 -15.91413 -15.64294 -15.59457 -15.34211 -15.08089 -14.52596 -14.20204 -14.10339 -13.98379 -13.86989 -13.59139 -13.44737 -13.28619 -13.22183 -13.07172 -12.87620 -12.81979 -12.72813 -12.55755 -12.29918 -12.26174 -12.21147 -11.89056 -11.73641 -11.65890 -10.77033 -10.65816 -10.59139 -10.24262 -9.95429 -9.40131 -9.32446 -8.23229 -6.38032 -0.87655 1.35820 1.38473 1.50176 1.85787 1.86414 2.29176 2.41787 2.80132 2.92114 3.06340 3.22491 3.56525 3.82236 3.91293 4.05092 4.07160 4.10823 4.18898 4.29197 4.33296 4.34525 4.43846 4.47368 4.59188 4.68455 4.75869 4.80829 4.89953 4.93456 4.96037 4.98890 5.00717 5.06744 5.12027 5.17714 5.23575 5.51779 5.56654 5.85075 5.95025 6.05885 6.06865 6.52450 6.70114 6.81794 7.28301 7.50927 8.83867 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.002092 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.399469 B =13379.141276 C =13699.236319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.492 3.508 13 O -0.605 6.605 14 C -0.112 4.112 15 C 0.079 3.921 16 N -0.527 5.527 17 C 0.038 3.962 18 C 0.146 3.854 19 N -1.007 6.007 20 S 2.513 3.487 21 C -0.642 4.642 22 N -1.281 6.281 23 O -0.999 6.999 24 C 0.110 3.890 25 C 0.021 3.979 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.024 0.976 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.020 0.980 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.392 0.608 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.028 0.972 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 -23.356 6.025 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.281 3.719 13 O -0.487 6.487 14 C -0.152 4.152 15 C -0.049 4.049 16 N -0.251 5.251 17 C -0.092 4.092 18 C 0.020 3.980 19 N -0.841 5.841 20 S 2.609 3.391 21 C -0.801 4.801 22 N -1.101 6.101 23 O -0.980 6.980 24 C -0.016 4.016 25 C -0.108 4.108 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.159 0.841 43 H 0.216 0.784 44 H 0.121 0.879 45 H 0.139 0.861 46 H 0.046 0.954 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.289 -23.938 5.792 29.528 hybrid contribution 0.640 1.504 0.141 1.640 sum -15.649 -22.435 5.933 27.990 Atomic orbital electron populations 1.21963 0.77570 1.04164 1.02702 1.48211 1.08608 1.06311 1.71159 1.18741 0.91062 0.80671 0.95959 1.21736 1.36580 1.06428 0.93088 0.92821 1.25892 0.94993 0.96524 1.02021 1.70064 1.39031 1.14876 1.32993 0.85354 0.77807 0.78457 0.79107 1.18996 1.19334 1.20929 1.21476 0.87793 0.86872 0.75768 1.90645 1.17011 1.88323 1.52756 1.21556 0.98684 0.88281 1.06646 1.21622 0.94463 0.88248 1.00607 1.61890 1.26951 1.00723 1.35575 1.22500 0.94300 0.91260 1.01113 1.21301 0.92149 0.95831 0.88754 1.58159 1.53751 1.30299 1.41848 1.09775 0.79343 0.70967 0.79042 1.30404 1.17651 1.13106 1.18916 1.72814 1.38469 1.40535 1.58270 1.93460 1.38065 1.82267 1.84248 1.22126 0.92510 0.83687 1.03261 1.22884 0.97529 1.00748 0.89627 0.90918 0.91880 0.88279 0.95849 0.98727 0.92437 0.86211 0.86110 0.96160 0.91965 0.95949 0.89533 0.90806 0.88874 0.84336 0.81774 0.84100 0.78398 0.87877 0.86127 0.95399 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.40 16 2 N -0.61 -25.02 2.86 -851.13 -2.43 -27.45 16 3 C 0.26 13.84 5.16 85.63 0.44 14.28 16 4 C -0.54 -31.09 9.39 25.60 0.24 -30.84 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.00 0.25 5.46 84.65 0.46 0.72 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 C 0.49 19.57 7.67 87.66 0.67 20.24 16 13 O -0.61 -31.16 15.56 -3.04 -0.05 -31.21 16 14 C -0.11 -2.73 4.18 29.85 0.12 -2.60 16 15 C 0.08 2.04 4.25 86.30 0.37 2.41 16 16 N -0.53 -9.74 4.63 -894.30 -4.14 -13.88 16 17 C 0.04 0.74 5.62 86.39 0.49 1.22 16 18 C 0.15 2.27 6.73 86.35 0.58 2.85 16 19 N -1.01 -11.24 3.38 -511.32 -1.73 -12.97 16 20 S 2.51 32.35 5.36 -56.49 -0.30 32.05 16 21 C -0.64 -0.96 9.26 113.37 1.05 0.09 16 22 N -1.28 -21.12 14.07 37.02 0.52 -20.60 16 23 O -1.00 -26.61 18.13 -148.98 -2.70 -29.31 16 24 C 0.11 0.60 6.67 86.50 0.58 1.18 16 25 C 0.02 0.26 5.48 86.54 0.47 0.74 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 28 H 0.10 1.87 6.44 -2.39 -0.02 1.85 16 29 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 30 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.12 2.45 7.40 -2.39 -0.02 2.43 16 33 H 0.12 2.07 6.37 -2.39 -0.02 2.05 16 34 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 35 H 0.06 1.89 7.93 -2.39 -0.02 1.87 16 36 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 1.69 7.99 -2.39 -0.02 1.67 16 38 H 0.07 1.33 7.93 -2.38 -0.02 1.31 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.14 -0.16 7.67 -2.39 -0.02 -0.18 16 41 H 0.16 -0.90 8.00 -2.39 -0.02 -0.92 16 42 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.39 4.04 8.92 -104.95 -0.94 3.11 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.12 -0.30 5.70 -2.39 -0.01 -0.31 16 46 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.11 0.94 6.16 -2.38 -0.01 0.92 16 Total: -1.00 -93.24 385.36 -1.71 -94.94 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.03 Total: 3.94 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.78 Total: 13.68 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -7.49 Total: -131.07 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -2.75 Total: -60.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 32.35 SS G_CDS: -0.30 Total: 32.05 kcal Total: -93.24 -1.71 -94.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879945352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.876 kcal (2) G-P(sol) polarization free energy of solvation -93.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.76 seconds