Wall clock time and date at job start Tue Mar 31 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38868 * 125.53111 * 2 1 4 4 C 1.38807 * 107.61802 * 180.02562 * 3 2 1 5 5 N 1.34111 * 132.45892 * 180.02562 * 4 3 2 6 6 C 1.32115 * 120.90984 * 179.97438 * 5 4 3 7 7 N 1.38979 * 119.89672 * 179.72380 * 6 5 4 8 8 C 1.34776 * 120.00036 * 355.20803 * 7 6 5 9 9 O 1.21569 * 119.99718 * 5.08314 * 8 7 6 10 10 N 1.34775 * 119.99777 * 185.08335 * 8 7 6 11 11 C 1.46500 * 119.99915 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46962 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46736 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00587 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99718 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47427 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47079 * 120.00180 * 17 15 13 20 20 H 1.48502 * 109.47193 * 240.00135 * 17 15 13 21 21 C 1.40306 * 120.20580 * 0.02562 * 6 5 4 22 22 C 1.36510 * 119.31738 * 359.97438 * 21 6 5 23 23 N 1.37909 * 120.46180 * 180.02562 * 22 21 6 24 24 C 1.46900 * 111.00388 * 359.97438 * 23 22 21 25 25 C 1.46904 * 111.00298 * 123.94749 * 23 22 21 26 26 N 1.37021 * 106.89297 * 0.02562 * 4 3 2 27 27 N 1.31268 * 125.52701 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46930 * 89.99637 * 1 2 3 29 29 H 1.08995 * 109.47182 * 210.00192 * 1 2 3 30 30 H 1.09000 * 109.46467 * 330.00216 * 1 2 3 31 31 H 1.07997 * 126.19067 * 0.04320 * 3 2 1 32 32 H 0.97000 * 119.99753 * 175.20525 * 7 6 5 33 33 H 0.96997 * 119.99882 * 0.02562 * 10 8 7 34 34 H 1.08993 * 109.47122 * 300.00547 * 11 10 8 35 35 H 1.09004 * 109.46980 * 60.00321 * 11 10 8 36 36 H 1.09001 * 109.47341 * 299.99897 * 12 11 10 37 37 H 1.08997 * 109.47331 * 60.00921 * 12 11 10 38 38 H 0.97002 * 119.99682 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.34377 * 179.97438 * 21 6 5 40 40 H 1.09008 * 109.46634 * 59.99898 * 24 23 22 41 41 H 1.08999 * 109.47524 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47087 * 300.00319 * 24 23 22 43 43 H 1.09000 * 109.46504 * 59.99923 * 25 23 22 44 44 H 1.08998 * 109.47482 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47037 * 300.00422 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3141 1.1301 0.0000 4 6 3.6348 0.7032 -0.0006 5 7 4.8006 1.3662 -0.0004 6 6 5.9509 0.7164 -0.0006 7 7 7.1466 1.4247 -0.0062 8 6 7.1334 2.7685 -0.1089 9 8 6.0759 3.3680 -0.1036 10 7 8.2926 3.4474 -0.2176 11 6 8.2782 4.9080 -0.3298 12 6 9.7139 5.4252 -0.4400 13 6 9.6991 6.9277 -0.5548 14 1 8.7597 7.4606 -0.5492 15 6 10.8850 7.6223 -0.6658 16 7 12.0289 6.9736 -0.6721 17 14 10.8666 9.4848 -0.8088 18 1 9.4634 9.9699 -0.7778 19 1 11.6194 10.0758 0.3266 20 1 11.5025 9.8893 -2.0884 21 6 5.9691 -0.6866 -0.0016 22 6 4.7876 -1.3704 -0.0017 23 7 4.7780 -2.7494 -0.0022 24 6 6.1456 -3.2856 -0.0029 25 6 4.0085 -3.2709 1.1354 26 7 3.6104 -0.6668 -0.0015 27 7 2.2698 -1.0683 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.9753 2.1556 0.0007 32 1 7.9907 0.9519 0.0639 33 1 9.1363 2.9689 -0.2222 34 1 7.7184 5.1986 -1.2187 35 1 7.8044 5.3357 0.5539 36 1 10.2740 5.1346 0.4488 37 1 10.1873 4.9976 -1.3238 38 1 12.8631 7.4623 -0.7506 39 1 6.9081 -1.2200 -0.0021 40 1 6.6718 -2.9399 0.8870 41 1 6.1089 -4.3749 -0.0028 42 1 6.6711 -2.9394 -0.8930 43 1 2.9804 -2.9142 1.0726 44 1 4.0167 -4.3606 1.1107 45 1 4.4569 -2.9248 2.0666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889039931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:16 Heat of formation + Delta-G solvation = 118.695827 kcal Electronic energy + Delta-G solvation = -27666.820391 eV Core-core repulsion = 23722.836586 eV Total energy + Delta-G solvation = -3943.983805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50394 -40.18338 -39.28984 -37.54410 -35.03827 -34.51488 -33.14545 -32.72538 -31.51379 -29.73595 -29.20475 -28.68765 -27.46872 -26.03434 -24.93086 -23.15860 -22.32146 -21.09627 -20.75786 -20.44969 -18.98270 -18.05210 -17.57937 -16.62117 -16.56711 -16.31413 -15.96181 -15.49378 -15.22606 -14.84449 -14.60436 -14.49816 -14.26500 -13.91309 -13.81344 -13.55660 -13.35834 -13.20629 -12.95067 -12.78264 -12.52216 -12.40345 -12.30445 -12.27258 -11.38634 -11.21266 -11.06769 -11.04586 -10.63113 -10.45049 -10.27871 -10.23883 -9.66182 -9.52022 -9.37090 -9.18082 -8.91790 -8.55819 -8.36907 -7.66550 -6.11251 -4.13648 0.51938 0.85214 1.75872 2.40759 2.47577 2.94562 3.24161 3.28160 3.35911 3.41491 3.70367 3.86517 4.07742 4.28741 4.40613 4.54206 4.55831 4.65556 4.75500 4.80179 4.86295 4.92673 5.11365 5.16783 5.26349 5.30329 5.37258 5.49153 5.50788 5.60730 5.86083 5.97153 6.10552 6.12127 6.35005 6.39053 6.42338 6.60473 6.72244 6.84972 6.86244 7.46160 7.51065 7.59334 7.79004 7.87961 8.17729 8.30126 8.79915 8.92889 9.51391 11.00437 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.002178 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.507896 B =12850.306903 C =14193.824149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.120 3.880 3 C -0.280 4.280 4 C 0.317 3.683 5 N -0.480 5.480 6 C 0.468 3.532 7 N -0.660 5.660 8 C 0.683 3.317 9 O -0.524 6.524 10 N -0.731 5.731 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.313 4.313 22 C 0.410 3.590 23 N -0.486 5.486 24 C 0.018 3.982 25 C 0.019 3.981 26 N -0.337 5.337 27 N -0.324 5.324 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.416 0.584 33 H 0.394 0.606 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.167 0.833 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 -24.887 3.398 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.040 4.040 3 C -0.311 4.311 4 C 0.088 3.912 5 N -0.203 5.203 6 C 0.211 3.789 7 N -0.309 5.309 8 C 0.382 3.618 9 O -0.393 6.393 10 N -0.386 5.386 11 C 0.017 3.983 12 C -0.025 4.025 13 C -0.559 4.559 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.345 4.345 22 C 0.195 3.805 23 N -0.200 5.200 24 C -0.129 4.129 25 C -0.126 4.126 26 N -0.113 5.113 27 N -0.150 5.150 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.252 0.748 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.185 0.815 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.372 -24.766 2.958 29.299 hybrid contribution 1.639 0.716 0.388 1.830 sum -13.733 -24.050 3.347 27.897 Atomic orbital electron populations 1.20256 0.85822 1.03634 1.03424 1.22254 0.97078 0.90272 0.94419 1.20773 0.87325 1.00162 1.22864 1.20638 0.94523 0.78375 0.97641 1.68443 0.94294 1.33632 1.23917 1.18031 0.86127 0.86611 0.88109 1.42809 1.06552 1.07134 1.74401 1.16178 0.85758 0.80397 0.79455 1.91064 1.29094 1.66098 1.53087 1.45604 1.06024 1.09591 1.77362 1.21689 1.01484 0.74249 1.00874 1.19339 0.88819 0.96506 0.97815 1.21082 0.92939 0.91173 1.50662 0.92089 1.24996 0.95469 0.98852 0.95019 1.69960 0.97422 1.35661 1.50320 0.86451 0.78296 0.85155 0.77643 1.19523 1.20951 1.20939 1.20956 0.97553 0.93222 1.22733 1.18294 0.82690 0.87993 0.91501 1.58023 1.17237 1.02168 1.42618 1.22743 0.85533 1.01621 1.02967 1.22684 1.00082 1.01460 0.88375 1.47060 1.05139 1.07321 1.51754 1.77584 0.82627 1.21289 1.33454 0.89971 0.90689 0.89828 0.82184 0.74763 0.77264 0.92428 0.92420 0.95898 0.95887 0.92909 0.81525 0.92718 0.89154 0.89471 0.88246 0.89469 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.43 36.01 0.38 -0.19 16 2 C 0.12 1.48 7.16 -82.60 -0.59 0.89 16 3 C -0.28 -4.08 10.84 -39.14 -0.42 -4.51 16 4 C 0.32 5.16 7.92 -155.55 -1.23 3.93 16 5 N -0.48 -8.45 8.03 -11.54 -0.09 -8.54 16 6 C 0.47 6.53 7.45 -154.84 -1.15 5.37 16 7 N -0.66 -8.33 5.38 -15.65 -0.08 -8.41 16 8 C 0.68 11.85 8.52 -86.92 -0.74 11.11 16 9 O -0.52 -11.52 14.61 5.30 0.08 -11.44 16 10 N -0.73 -12.25 5.56 -65.23 -0.36 -12.62 16 11 C 0.14 2.91 5.61 -4.04 -0.02 2.89 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.31 -3.18 8.64 -39.43 -0.34 -3.52 16 22 C 0.41 4.68 6.46 -152.81 -0.99 3.69 16 23 N -0.49 -4.18 5.07 -188.74 -0.96 -5.14 16 24 C 0.02 0.08 8.27 60.06 0.50 0.58 16 25 C 0.02 0.14 9.38 60.07 0.56 0.70 16 26 N -0.34 -4.78 3.76 -11.62 -0.04 -4.82 16 27 N -0.32 -4.40 10.71 33.54 0.36 -4.04 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.42 3.25 8.72 -40.82 -0.36 2.89 16 33 H 0.39 5.37 8.49 -40.82 -0.35 5.02 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.17 0.97 5.78 -52.49 -0.30 0.67 16 40 H 0.05 0.19 7.37 -51.92 -0.38 -0.19 16 41 H 0.09 0.26 8.12 -51.93 -0.42 -0.16 16 42 H 0.09 0.35 7.37 -51.93 -0.38 -0.03 16 43 H 0.10 0.95 6.13 -51.93 -0.32 0.63 16 44 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 45 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -37.14 376.96 -10.60 -47.74 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.28 Total: 2.32 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -4.61 Total: 8.08 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.44 Total: -68.64 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.14 -10.60 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.436 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds