Wall clock time and date at job start Tue Mar 31 2020 17:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38868 * 125.53111 * 2 1 4 4 C 1.38807 * 107.61802 * 180.02562 * 3 2 1 5 5 N 1.34111 * 132.45892 * 180.02562 * 4 3 2 6 6 C 1.32115 * 120.90984 * 179.97438 * 5 4 3 7 7 N 1.38979 * 119.89672 * 179.72380 * 6 5 4 8 8 C 1.34776 * 120.00036 * 355.20803 * 7 6 5 9 9 O 1.21569 * 119.99718 * 5.08314 * 8 7 6 10 10 N 1.34775 * 119.99777 * 185.08335 * 8 7 6 11 11 C 1.46500 * 119.99915 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46962 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46736 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00587 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99718 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47427 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47079 * 120.00180 * 17 15 13 20 20 H 1.48502 * 109.47193 * 240.00135 * 17 15 13 21 21 C 1.40306 * 120.20580 * 0.02562 * 6 5 4 22 22 C 1.36510 * 119.31738 * 359.97438 * 21 6 5 23 23 N 1.37909 * 120.46180 * 180.02562 * 22 21 6 24 24 C 1.46900 * 111.00388 * 359.97438 * 23 22 21 25 25 C 1.46904 * 111.00298 * 123.94749 * 23 22 21 26 26 N 1.37021 * 106.89297 * 0.02562 * 4 3 2 27 27 N 1.31268 * 125.52701 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46930 * 89.99637 * 1 2 3 29 29 H 1.08995 * 109.47182 * 210.00192 * 1 2 3 30 30 H 1.09000 * 109.46467 * 330.00216 * 1 2 3 31 31 H 1.07997 * 126.19067 * 0.04320 * 3 2 1 32 32 H 0.97000 * 119.99753 * 175.20525 * 7 6 5 33 33 H 0.96997 * 119.99882 * 0.02562 * 10 8 7 34 34 H 1.08993 * 109.47122 * 300.00547 * 11 10 8 35 35 H 1.09004 * 109.46980 * 60.00321 * 11 10 8 36 36 H 1.09001 * 109.47341 * 299.99897 * 12 11 10 37 37 H 1.08997 * 109.47331 * 60.00921 * 12 11 10 38 38 H 0.97002 * 119.99682 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.34377 * 179.97438 * 21 6 5 40 40 H 1.09008 * 109.46634 * 59.99898 * 24 23 22 41 41 H 1.08999 * 109.47524 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47087 * 300.00319 * 24 23 22 43 43 H 1.09000 * 109.46504 * 59.99923 * 25 23 22 44 44 H 1.08998 * 109.47482 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47037 * 300.00422 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3141 1.1301 0.0000 4 6 3.6348 0.7032 -0.0006 5 7 4.8006 1.3662 -0.0004 6 6 5.9509 0.7164 -0.0006 7 7 7.1466 1.4247 -0.0062 8 6 7.1334 2.7685 -0.1089 9 8 6.0759 3.3680 -0.1036 10 7 8.2926 3.4474 -0.2176 11 6 8.2782 4.9080 -0.3298 12 6 9.7139 5.4252 -0.4400 13 6 9.6991 6.9277 -0.5548 14 1 8.7597 7.4606 -0.5492 15 6 10.8850 7.6223 -0.6658 16 7 12.0289 6.9736 -0.6721 17 14 10.8666 9.4848 -0.8088 18 1 9.4634 9.9699 -0.7778 19 1 11.6194 10.0758 0.3266 20 1 11.5025 9.8893 -2.0884 21 6 5.9691 -0.6866 -0.0016 22 6 4.7876 -1.3704 -0.0017 23 7 4.7780 -2.7494 -0.0022 24 6 6.1456 -3.2856 -0.0029 25 6 4.0085 -3.2709 1.1354 26 7 3.6104 -0.6668 -0.0015 27 7 2.2698 -1.0683 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.9753 2.1556 0.0007 32 1 7.9907 0.9519 0.0639 33 1 9.1363 2.9689 -0.2222 34 1 7.7184 5.1986 -1.2187 35 1 7.8044 5.3357 0.5539 36 1 10.2740 5.1346 0.4488 37 1 10.1873 4.9976 -1.3238 38 1 12.8631 7.4623 -0.7506 39 1 6.9081 -1.2200 -0.0021 40 1 6.6718 -2.9399 0.8870 41 1 6.1089 -4.3749 -0.0028 42 1 6.6711 -2.9394 -0.8930 43 1 2.9804 -2.9142 1.0726 44 1 4.0167 -4.3606 1.1107 45 1 4.4569 -2.9248 2.0666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889039931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:13 Heat of formation + Delta-G solvation = 92.662139 kcal Electronic energy + Delta-G solvation = -27667.949296 eV Core-core repulsion = 23722.836586 eV Total energy + Delta-G solvation = -3945.112710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -43.46457 -41.47029 -40.08242 -38.61450 -36.60359 -35.77766 -34.82966 -33.96427 -32.41949 -31.41452 -30.03677 -29.61610 -28.17710 -26.97202 -26.50074 -24.36697 -23.34068 -22.75788 -21.99244 -21.39375 -20.19318 -19.14857 -18.63780 -18.36498 -17.51937 -17.43377 -16.88318 -16.77549 -16.46260 -15.98951 -15.96024 -15.56457 -15.28306 -15.16366 -15.10508 -14.75826 -14.33448 -14.28096 -13.99939 -13.63803 -13.35506 -13.31924 -13.20069 -13.12167 -12.94076 -12.72381 -12.51644 -12.24500 -12.19474 -12.06221 -11.69545 -11.55692 -11.42511 -11.32379 -10.59638 -10.48548 -10.23771 -10.09819 -9.72520 -8.70811 -8.23472 -6.32686 -0.39759 -0.16222 0.87512 1.24125 1.41528 1.43519 1.52649 1.56177 1.94477 2.26516 2.40887 2.55838 2.76469 3.11809 3.12675 3.43003 3.73973 3.83271 3.99398 4.12480 4.19959 4.29395 4.39979 4.46998 4.48396 4.52161 4.52490 4.73421 4.81321 4.85445 4.87365 4.89280 4.91831 5.06106 5.07470 5.24743 5.32233 5.41581 5.50288 5.58319 5.61372 5.70528 5.79173 5.83967 6.18031 6.48658 6.63671 6.80500 7.07005 7.36327 7.46763 8.88454 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.002178 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.507896 B =12850.306903 C =14193.824149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.123 3.877 3 C -0.306 4.306 4 C 0.291 3.709 5 N -0.534 5.534 6 C 0.457 3.543 7 N -0.638 5.638 8 C 0.687 3.313 9 O -0.573 6.573 10 N -0.720 5.720 11 C 0.160 3.840 12 C 0.024 3.976 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.299 4.299 22 C 0.401 3.599 23 N -0.492 5.492 24 C 0.009 3.991 25 C 0.020 3.980 26 N -0.344 5.344 27 N -0.333 5.333 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.440 0.560 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.214 0.786 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -26.946 3.549 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 C -0.337 4.337 4 C 0.063 3.937 5 N -0.259 5.259 6 C 0.202 3.798 7 N -0.290 5.290 8 C 0.386 3.614 9 O -0.447 6.447 10 N -0.376 5.376 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.330 4.330 22 C 0.186 3.814 23 N -0.206 5.206 24 C -0.136 4.136 25 C -0.124 4.124 26 N -0.120 5.120 27 N -0.158 5.158 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.175 0.825 32 H 0.282 0.718 33 H 0.248 0.752 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.231 0.769 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.877 -26.926 3.117 30.920 hybrid contribution 1.481 1.214 0.338 1.944 sum -13.396 -25.712 3.455 29.198 Atomic orbital electron populations 1.20432 0.82662 1.05038 1.04677 1.22889 0.98912 0.89060 0.92901 1.21023 0.87744 1.00873 1.24079 1.20779 0.94677 0.79613 0.98674 1.68313 0.95723 1.35757 1.26089 1.18417 0.85437 0.88121 0.87848 1.42393 1.07649 1.05382 1.73558 1.16241 0.84759 0.81693 0.78707 1.91043 1.30797 1.67720 1.55097 1.45198 1.07011 1.08107 1.77310 1.21141 0.98962 0.76583 0.99690 1.19135 0.90322 0.95221 0.96648 1.21485 0.93014 0.93001 1.50821 0.92471 1.25821 0.95115 1.03543 0.94586 1.70048 0.97997 1.37471 1.50927 0.85434 0.78404 0.79549 0.77890 1.19171 1.20220 1.20249 1.21261 0.99091 0.91314 1.21345 1.18834 0.82116 0.89531 0.90960 1.58116 1.19628 1.00305 1.42568 1.23003 0.83435 1.02940 1.04182 1.22704 0.98578 1.03000 0.88132 1.47219 1.05970 1.06934 1.51905 1.77544 0.82747 1.21790 1.33747 0.88607 0.89349 0.88325 0.82490 0.71804 0.75176 0.93747 0.93618 0.96873 0.96941 0.92556 0.76892 0.90946 0.86995 0.88641 0.90769 0.86668 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.43 71.24 0.74 -0.27 16 2 C 0.12 3.08 7.16 42.79 0.31 3.39 16 3 C -0.31 -9.41 10.84 22.56 0.24 -9.17 16 4 C 0.29 9.89 7.92 133.13 1.05 10.95 16 5 N -0.53 -19.49 8.03 -190.43 -1.53 -21.02 16 6 C 0.46 12.50 7.45 133.44 0.99 13.50 16 7 N -0.64 -15.41 5.38 -321.70 -1.73 -17.14 16 8 C 0.69 23.88 8.52 179.06 1.53 25.41 16 9 O -0.57 -26.07 14.61 -3.93 -0.06 -26.13 16 10 N -0.72 -23.98 5.56 -478.56 -2.66 -26.64 16 11 C 0.16 6.83 5.61 86.38 0.48 7.31 16 12 C 0.02 1.19 5.09 29.85 0.15 1.34 16 13 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 14 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 15 C 0.01 0.45 5.46 84.66 0.46 0.92 16 16 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 C -0.30 -5.45 8.64 22.37 0.19 -5.25 16 22 C 0.40 8.59 6.46 131.34 0.85 9.43 16 23 N -0.49 -7.24 5.07 -751.05 -3.81 -11.04 16 24 C 0.01 0.05 8.27 127.69 1.06 1.10 16 25 C 0.02 0.26 9.38 127.69 1.20 1.45 16 26 N -0.34 -9.80 3.76 -190.69 -0.72 -10.52 16 27 N -0.33 -9.07 10.71 -47.79 -0.51 -9.58 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.16 4.66 8.06 -2.91 -0.02 4.63 16 32 H 0.44 5.76 8.72 -92.71 -0.81 4.95 16 33 H 0.41 10.75 8.49 -92.71 -0.79 9.96 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.60 16 39 H 0.21 1.58 5.78 -2.91 -0.02 1.56 16 40 H 0.07 0.17 7.37 -2.38 -0.02 0.16 16 41 H 0.11 0.16 8.12 -2.39 -0.02 0.14 16 42 H 0.09 0.37 7.37 -2.39 -0.02 0.36 16 43 H 0.07 1.35 6.13 -2.39 -0.01 1.34 16 44 H 0.11 0.77 8.12 -2.39 -0.02 0.75 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -84.06 376.96 0.24 -83.82 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.55 Total: 15.57 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 9.50 Total: 30.17 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -10.67 Total: -149.01 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -84.06 0.24 -83.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.482 kcal (2) G-P(sol) polarization free energy of solvation -84.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds