Wall clock time and date at job start Tue Mar 31 2020 17:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46646 * 269.99534 * 3 2 1 5 5 H 1.48493 * 109.47149 * 29.99573 * 3 2 1 6 6 H 1.48494 * 109.47067 * 150.00126 * 3 2 1 7 7 C 1.37875 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00351 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99511 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00034 * 294.30571 * 10 9 7 12 12 C 1.53240 * 109.33989 * 172.74645 * 11 10 9 13 13 N 1.47080 * 108.51963 * 53.82741 * 12 11 10 14 14 C 1.34776 * 120.87806 * 128.79548 * 13 12 11 15 15 O 1.21590 * 119.99892 * 175.02318 * 14 13 12 16 16 N 1.34775 * 120.00584 * 355.02343 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.07470 * 16 14 13 18 18 H 1.09010 * 109.50088 * 35.07783 * 17 16 14 19 19 C 1.53035 * 109.50735 * 275.00524 * 17 16 14 20 20 N 1.46845 * 109.52739 * 180.87706 * 19 17 16 21 21 C 1.46844 * 111.19637 * 61.73963 * 20 19 17 22 22 C 1.53039 * 109.52450 * 298.25964 * 21 20 19 23 23 C 1.53113 * 109.27931 * 59.18006 * 22 21 20 24 24 F 1.39904 * 109.52567 * 182.44198 * 23 22 21 25 25 F 1.39899 * 109.52540 * 62.24942 * 23 22 21 26 26 C 1.47083 * 118.23626 * 308.81313 * 13 12 11 27 27 C 1.46901 * 110.99899 * 169.99979 * 10 9 7 28 28 H 0.96999 * 120.00484 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47506 * 299.99788 * 9 7 2 30 30 H 1.08997 * 109.47345 * 60.00237 * 9 7 2 31 31 H 1.09004 * 109.49251 * 292.70697 * 11 10 9 32 32 H 1.09000 * 109.49471 * 52.78525 * 11 10 9 33 33 H 1.08998 * 109.62516 * 294.12064 * 12 11 10 34 34 H 1.08999 * 109.62621 * 173.53654 * 12 11 10 35 35 H 0.97003 * 119.99243 * 5.08121 * 16 14 13 36 36 H 1.09006 * 109.46155 * 300.89273 * 19 17 16 37 37 H 1.09001 * 109.46387 * 60.86085 * 19 17 16 38 38 H 1.00899 * 111.00194 * 297.64321 * 20 19 17 39 39 H 1.08998 * 109.46766 * 58.27717 * 21 20 19 40 40 H 1.09004 * 109.46666 * 178.25726 * 21 20 19 41 41 H 1.08998 * 109.50420 * 179.12498 * 22 21 20 42 42 H 1.08999 * 109.50161 * 299.19950 * 22 21 20 43 43 H 1.08997 * 109.62896 * 291.47468 * 26 13 12 44 44 H 1.09008 * 109.78148 * 170.98988 * 26 13 12 45 45 H 1.08994 * 109.49370 * 307.21313 * 27 10 9 46 46 H 1.09000 * 109.48847 * 67.26665 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9769 -3.6490 -1.2493 12 6 4.0792 -4.7076 -1.1375 13 7 3.4618 -5.9861 -0.7533 14 6 3.7119 -7.1121 -1.4505 15 8 3.2663 -8.1763 -1.0667 16 7 4.4559 -7.0586 -2.5730 17 6 4.6354 -8.2605 -3.3909 18 1 3.7223 -8.8556 -3.3686 19 6 5.7976 -9.0873 -2.8361 20 7 5.9914 -10.2817 -3.6681 21 6 6.3385 -9.9172 -5.0476 22 6 5.1924 -9.1153 -5.6685 23 6 4.9472 -7.8550 -4.8342 24 9 3.8641 -7.1463 -5.3650 25 9 6.0908 -7.0495 -4.8567 26 6 2.5640 -6.0030 0.4115 27 6 1.5213 -4.8935 0.2387 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 0.8902 30 1 0.6248 -2.5571 -0.8897 31 1 2.3151 -3.8991 -2.0785 32 1 3.4273 -2.6720 -1.4250 33 1 4.8004 -4.4064 -0.3778 34 1 4.5803 -4.8173 -2.0992 35 1 4.8726 -6.2240 -2.8393 36 1 6.7073 -8.4868 -2.8451 37 1 5.5724 -9.3898 -1.8134 38 1 5.1754 -10.8747 -3.6452 39 1 7.2456 -9.3129 -5.0464 40 1 6.5060 -10.8224 -5.6313 41 1 5.4568 -8.8316 -6.6871 42 1 4.2885 -9.7242 -5.6833 43 1 3.1396 -5.8264 1.3201 44 1 2.0632 -6.9690 0.4773 45 1 0.9162 -4.8191 1.1421 46 1 0.8794 -5.1261 -0.6110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892157724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:37 Heat of formation + Delta-G solvation = -107.328623 kcal Electronic energy + Delta-G solvation = -30084.006269 eV Core-core repulsion = 25679.532122 eV Total energy + Delta-G solvation = -4404.474147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -49.41834 -47.39580 -40.47818 -38.73281 -37.54489 -34.79989 -34.41166 -32.45126 -31.51173 -30.93864 -29.70510 -28.03240 -25.52811 -24.16552 -23.81631 -23.27360 -22.05508 -21.25910 -20.78975 -19.48713 -18.41642 -17.78999 -17.56975 -16.57774 -16.44242 -16.32036 -15.82342 -15.37899 -15.11252 -14.97450 -14.70299 -14.44517 -14.18979 -14.10489 -13.84424 -13.75450 -13.67755 -13.58419 -13.37740 -12.94654 -12.87492 -12.67996 -12.31670 -12.11505 -11.94149 -11.68967 -11.31481 -11.09483 -11.01757 -10.97763 -10.77589 -10.66270 -10.57224 -10.10783 -9.89173 -9.83641 -9.30174 -8.90348 -8.51541 -8.40118 -7.35571 -6.08242 -4.10489 2.40189 3.05505 3.17260 3.27930 3.34741 3.38328 3.46147 3.59704 3.80305 3.93576 4.06465 4.28221 4.36951 4.61879 4.71801 4.75762 4.88885 4.98592 5.14752 5.20581 5.23006 5.27681 5.36495 5.40191 5.40713 5.61650 5.62427 5.72704 5.80826 6.01976 6.07991 6.25951 6.37855 6.41369 6.42432 6.55891 6.78496 6.90378 7.19509 7.25977 7.71272 7.84112 7.98712 8.09489 8.44715 8.50442 8.96636 9.54195 11.02559 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.002725 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.495240 B =10274.415743 C =11042.086674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.534 5.534 11 C 0.051 3.949 12 C 0.114 3.886 13 N -0.621 5.621 14 C 0.713 3.287 15 O -0.595 6.595 16 N -0.742 5.742 17 C 0.098 3.902 18 H 0.112 0.888 19 C 0.048 3.952 20 N -0.677 5.677 21 C 0.055 3.945 22 C -0.197 4.197 23 C 0.282 3.718 24 F -0.192 7.192 25 F -0.193 7.193 26 C 0.137 3.863 27 C 0.040 3.960 28 H 0.262 0.738 29 H 0.032 0.968 30 H -0.009 1.009 31 H 0.025 0.975 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.348 0.652 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -19.716 -10.389 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.079 4.079 12 C -0.009 4.009 13 N -0.357 5.357 14 C 0.415 3.585 15 O -0.474 6.474 16 N -0.401 5.401 17 C -0.012 4.012 18 H 0.130 0.870 19 C -0.083 4.083 20 N -0.305 5.305 21 C -0.075 4.075 22 C -0.237 4.237 23 C 0.245 3.755 24 F -0.173 7.173 25 F -0.174 7.174 26 C 0.014 3.986 27 C -0.090 4.090 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.167 0.833 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.560 -20.337 -9.511 25.725 hybrid contribution -1.022 1.989 -1.364 2.619 sum 11.538 -18.348 -10.875 24.250 Atomic orbital electron populations 1.69952 1.06109 1.26893 1.50722 1.24997 0.94860 0.99374 0.95339 0.86496 0.79822 0.83061 0.78037 1.20739 1.21233 1.19717 1.21131 0.93453 0.89863 1.50427 0.91801 1.19729 0.89986 0.87147 0.96248 1.62079 1.28098 1.02773 1.33013 1.22316 0.95094 0.98917 0.91536 1.21905 0.96401 0.83060 0.99561 1.47379 1.49539 1.07086 1.31697 1.15701 0.78823 0.84232 0.79754 1.90885 1.57891 1.28087 1.70499 1.45035 1.56468 1.12593 1.26015 1.22588 1.02863 0.88738 0.86978 0.86972 1.22562 0.96614 0.90366 0.98784 1.60589 1.42931 1.17221 1.09785 1.22142 0.96675 0.99903 0.88760 1.23384 1.03548 0.95320 1.01441 1.21425 0.73303 0.86157 0.94654 1.93075 1.55432 1.80906 1.87850 1.93015 1.51010 1.75983 1.97366 1.21661 0.91034 0.99424 0.86500 1.22443 0.95005 0.90572 1.00977 0.92843 0.94952 0.99132 0.95703 0.88424 0.90318 0.91367 0.76073 0.89618 0.88152 0.83331 0.89524 0.88750 0.88196 0.88335 0.90974 0.89314 0.89902 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 9 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 10 N -0.53 -11.03 4.62 -235.76 -1.09 -12.12 16 11 C 0.05 0.92 5.46 -3.70 -0.02 0.90 16 12 C 0.11 1.63 6.59 -3.60 -0.02 1.61 16 13 N -0.62 -9.40 3.01 -178.19 -0.54 -9.94 16 14 C 0.71 10.71 8.27 -86.92 -0.72 9.99 16 15 O -0.59 -10.35 15.51 5.29 0.08 -10.27 16 16 N -0.74 -8.91 4.93 -58.60 -0.29 -9.20 16 17 C 0.10 0.97 2.13 -67.86 -0.14 0.83 16 18 H 0.11 1.21 7.66 -51.92 -0.40 0.81 16 19 C 0.05 0.42 6.02 -3.84 -0.02 0.39 16 20 N -0.68 -4.60 6.87 -113.82 -0.78 -5.38 16 21 C 0.06 0.29 6.44 -3.83 -0.02 0.27 16 22 C -0.20 -1.16 5.60 -26.65 -0.15 -1.31 16 23 C 0.28 2.59 1.72 -26.61 -0.05 2.54 16 24 F -0.19 -2.26 17.03 2.25 0.04 -2.22 16 25 F -0.19 -1.93 15.77 2.25 0.04 -1.89 16 26 C 0.14 2.12 6.58 -3.60 -0.02 2.10 16 27 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.88 6.67 -51.93 -0.35 1.53 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.80 5.63 -51.93 -0.29 0.51 16 35 H 0.40 4.50 5.73 -40.82 -0.23 4.26 16 36 H 0.09 0.76 7.88 -51.93 -0.41 0.36 16 37 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.35 1.99 8.86 -39.29 -0.35 1.65 16 39 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.36 7.11 -51.92 -0.37 0.99 16 45 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -31.82 366.92 -9.85 -41.67 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.95 Total: 3.03 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -1.60 Total: 10.21 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -1.96 Total: -62.18 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.82 -9.85 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892157724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.660 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds