Wall clock time and date at job start Tue Mar 31 2020 17:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46646 * 269.99534 * 3 2 1 5 5 H 1.48493 * 109.47149 * 29.99573 * 3 2 1 6 6 H 1.48494 * 109.47067 * 150.00126 * 3 2 1 7 7 C 1.37875 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00351 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99511 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00034 * 294.30571 * 10 9 7 12 12 C 1.53240 * 109.33989 * 172.74645 * 11 10 9 13 13 N 1.47080 * 108.51963 * 53.82741 * 12 11 10 14 14 C 1.34776 * 120.87806 * 128.79548 * 13 12 11 15 15 O 1.21590 * 119.99892 * 175.02318 * 14 13 12 16 16 N 1.34775 * 120.00584 * 355.02343 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.07470 * 16 14 13 18 18 H 1.09010 * 109.50088 * 35.07783 * 17 16 14 19 19 C 1.53035 * 109.50735 * 275.00524 * 17 16 14 20 20 N 1.46845 * 109.52739 * 180.87706 * 19 17 16 21 21 C 1.46844 * 111.19637 * 61.73963 * 20 19 17 22 22 C 1.53039 * 109.52450 * 298.25964 * 21 20 19 23 23 C 1.53113 * 109.27931 * 59.18006 * 22 21 20 24 24 F 1.39904 * 109.52567 * 182.44198 * 23 22 21 25 25 F 1.39899 * 109.52540 * 62.24942 * 23 22 21 26 26 C 1.47083 * 118.23626 * 308.81313 * 13 12 11 27 27 C 1.46901 * 110.99899 * 169.99979 * 10 9 7 28 28 H 0.96999 * 120.00484 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47506 * 299.99788 * 9 7 2 30 30 H 1.08997 * 109.47345 * 60.00237 * 9 7 2 31 31 H 1.09004 * 109.49251 * 292.70697 * 11 10 9 32 32 H 1.09000 * 109.49471 * 52.78525 * 11 10 9 33 33 H 1.08998 * 109.62516 * 294.12064 * 12 11 10 34 34 H 1.08999 * 109.62621 * 173.53654 * 12 11 10 35 35 H 0.97003 * 119.99243 * 5.08121 * 16 14 13 36 36 H 1.09006 * 109.46155 * 300.89273 * 19 17 16 37 37 H 1.09001 * 109.46387 * 60.86085 * 19 17 16 38 38 H 1.00899 * 111.00194 * 297.64321 * 20 19 17 39 39 H 1.08998 * 109.46766 * 58.27717 * 21 20 19 40 40 H 1.09004 * 109.46666 * 178.25726 * 21 20 19 41 41 H 1.08998 * 109.50420 * 179.12498 * 22 21 20 42 42 H 1.08999 * 109.50161 * 299.19950 * 22 21 20 43 43 H 1.08997 * 109.62896 * 291.47468 * 26 13 12 44 44 H 1.09008 * 109.78148 * 170.98988 * 26 13 12 45 45 H 1.08994 * 109.49370 * 307.21313 * 27 10 9 46 46 H 1.09000 * 109.48847 * 67.26665 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9769 -3.6490 -1.2493 12 6 4.0792 -4.7076 -1.1375 13 7 3.4618 -5.9861 -0.7533 14 6 3.7119 -7.1121 -1.4505 15 8 3.2663 -8.1763 -1.0667 16 7 4.4559 -7.0586 -2.5730 17 6 4.6354 -8.2605 -3.3909 18 1 3.7223 -8.8556 -3.3686 19 6 5.7976 -9.0873 -2.8361 20 7 5.9914 -10.2817 -3.6681 21 6 6.3385 -9.9172 -5.0476 22 6 5.1924 -9.1153 -5.6685 23 6 4.9472 -7.8550 -4.8342 24 9 3.8641 -7.1463 -5.3650 25 9 6.0908 -7.0495 -4.8567 26 6 2.5640 -6.0030 0.4115 27 6 1.5213 -4.8935 0.2387 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 0.8902 30 1 0.6248 -2.5571 -0.8897 31 1 2.3151 -3.8991 -2.0785 32 1 3.4273 -2.6720 -1.4250 33 1 4.8004 -4.4064 -0.3778 34 1 4.5803 -4.8173 -2.0992 35 1 4.8726 -6.2240 -2.8393 36 1 6.7073 -8.4868 -2.8451 37 1 5.5724 -9.3898 -1.8134 38 1 5.1754 -10.8747 -3.6452 39 1 7.2456 -9.3129 -5.0464 40 1 6.5060 -10.8224 -5.6313 41 1 5.4568 -8.8316 -6.6871 42 1 4.2885 -9.7242 -5.6833 43 1 3.1396 -5.8264 1.3201 44 1 2.0632 -6.9690 0.4773 45 1 0.9162 -4.8191 1.1421 46 1 0.8794 -5.1261 -0.6110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892157724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:35 Heat of formation + Delta-G solvation = -131.527347 kcal Electronic energy + Delta-G solvation = -30085.055605 eV Core-core repulsion = 25679.532122 eV Total energy + Delta-G solvation = -4405.523483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -50.19916 -48.19541 -41.64814 -39.65614 -38.77438 -36.03008 -35.74401 -34.39298 -32.26327 -32.07088 -30.75160 -29.66076 -27.19799 -24.86580 -24.81833 -24.52649 -23.64838 -22.21402 -21.95289 -20.65957 -19.54598 -18.58308 -18.51733 -18.37976 -17.44826 -17.33613 -16.80996 -16.72297 -16.17610 -16.03304 -15.91160 -15.84382 -15.48349 -15.36078 -15.05927 -14.94397 -14.58455 -14.49680 -14.31502 -14.06836 -13.94610 -13.59602 -13.55040 -13.30304 -13.08565 -12.81303 -12.78784 -12.61902 -12.42650 -12.34498 -12.19867 -12.18109 -11.81096 -11.69005 -11.31116 -11.28029 -10.76973 -10.63107 -9.83768 -9.46303 -9.08656 -8.21267 -6.31755 1.34181 1.42564 1.43877 1.55420 1.93479 2.39767 2.40108 2.57819 2.81947 3.10749 3.14070 3.18607 3.32105 3.36225 3.65605 3.86582 3.94567 4.00532 4.10431 4.19780 4.20688 4.29914 4.38682 4.46552 4.49715 4.53737 4.70749 4.75841 4.80404 4.85464 4.90118 4.98171 5.01582 5.13404 5.15548 5.20125 5.34516 5.61872 5.74279 5.82586 6.01062 6.23173 6.31064 6.53007 6.71055 6.84141 7.32769 7.38388 8.90152 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.002725 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.495240 B =10274.415743 C =11042.086674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.126 3.874 13 N -0.626 5.626 14 C 0.713 3.287 15 O -0.619 6.619 16 N -0.734 5.734 17 C 0.096 3.904 18 H 0.104 0.896 19 C 0.060 3.940 20 N -0.678 5.678 21 C 0.058 3.942 22 C -0.189 4.189 23 C 0.277 3.723 24 F -0.209 7.209 25 F -0.197 7.197 26 C 0.147 3.853 27 C 0.042 3.958 28 H 0.264 0.736 29 H 0.007 0.993 30 H -0.043 1.043 31 H 0.010 0.990 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.355 0.645 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.435 -20.465 -11.328 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.261 5.261 11 C -0.078 4.078 12 C 0.003 3.997 13 N -0.362 5.362 14 C 0.414 3.586 15 O -0.500 6.500 16 N -0.393 5.393 17 C -0.013 4.013 18 H 0.122 0.878 19 C -0.072 4.072 20 N -0.307 5.307 21 C -0.071 4.071 22 C -0.229 4.229 23 C 0.240 3.760 24 F -0.190 7.190 25 F -0.178 7.178 26 C 0.024 3.976 27 C -0.087 4.087 28 H 0.073 0.927 29 H 0.025 0.975 30 H -0.025 1.025 31 H 0.029 0.971 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 14.953 -21.115 -10.479 27.915 hybrid contribution -1.785 2.154 -1.103 3.007 sum 13.168 -18.961 -11.583 25.828 Atomic orbital electron populations 1.70092 1.07900 1.27938 1.51793 1.25944 0.95692 1.03343 0.94790 0.85359 0.78655 0.78102 0.78373 1.19883 1.21104 1.18486 1.21457 0.93845 0.90672 1.49994 0.91183 1.19379 0.90070 0.88916 0.93410 1.62015 1.27027 1.02661 1.34395 1.22339 0.95570 0.99973 0.89888 1.21847 0.94847 0.81349 1.01644 1.47404 1.49609 1.07463 1.31710 1.15777 0.78910 0.83695 0.80178 1.90867 1.58976 1.28928 1.71244 1.45008 1.55519 1.13597 1.25164 1.22767 1.03119 0.87997 0.87401 0.87824 1.22358 0.95778 0.90807 0.98210 1.60595 1.43235 1.16236 1.10601 1.22226 0.96082 1.00865 0.87976 1.23421 1.04404 0.93648 1.01415 1.21743 0.72611 0.87101 0.94523 1.93044 1.56412 1.81508 1.88033 1.93004 1.51111 1.76336 1.97376 1.21523 0.90610 0.98275 0.87229 1.22486 0.95696 0.90040 1.00510 0.92728 0.97512 1.02508 0.97132 0.89444 0.89086 0.88473 0.75541 0.89666 0.89914 0.82537 0.89907 0.86222 0.86863 0.87097 0.89784 0.88908 0.89652 0.96903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.52 -28.67 8.41 25.60 0.22 -28.46 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.97 4.72 85.56 0.40 11.37 16 10 N -0.54 -22.47 4.62 -899.82 -4.16 -26.63 16 11 C 0.05 1.87 5.46 86.38 0.47 2.34 16 12 C 0.13 3.41 6.59 86.35 0.57 3.98 16 13 N -0.63 -18.25 3.01 -835.93 -2.52 -20.77 16 14 C 0.71 20.70 8.27 179.06 1.48 22.18 16 15 O -0.62 -21.16 15.51 -4.00 -0.06 -21.22 16 16 N -0.73 -16.75 4.93 -457.57 -2.26 -19.00 16 17 C 0.10 1.80 2.13 45.05 0.10 1.89 16 18 H 0.10 2.16 7.66 -2.38 -0.02 2.14 16 19 C 0.06 0.97 6.02 86.33 0.52 1.49 16 20 N -0.68 -7.80 6.87 -514.00 -3.53 -11.33 16 21 C 0.06 0.45 6.44 86.33 0.56 1.01 16 22 C -0.19 -1.75 5.60 30.65 0.17 -1.57 16 23 C 0.28 4.64 1.72 30.67 0.05 4.69 16 24 F -0.21 -4.69 17.03 44.97 0.77 -3.93 16 25 F -0.20 -3.59 15.77 44.97 0.71 -2.88 16 26 C 0.15 4.44 6.58 86.35 0.57 5.01 16 27 C 0.04 1.51 5.62 86.38 0.49 2.00 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.01 0.39 7.97 -2.39 -0.02 0.37 16 30 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 3.36 6.67 -2.39 -0.02 3.34 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.07 5.63 -2.39 -0.01 2.06 16 35 H 0.41 8.40 5.73 -92.71 -0.53 7.87 16 36 H 0.08 1.39 7.88 -2.38 -0.02 1.37 16 37 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.36 3.34 8.86 -89.69 -0.79 2.55 16 39 H 0.08 0.76 7.87 -2.39 -0.02 0.74 16 40 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.09 2.78 7.11 -2.38 -0.02 2.76 16 45 H 0.09 3.01 7.99 -2.39 -0.02 2.99 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -69.61 366.92 -3.00 -72.61 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.31 Total: 17.23 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 6.05 Total: 26.42 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -12.17 Total: -133.54 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 1.47 Total: -6.81 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.61 -3.00 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892157724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.922 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds