Wall clock time and date at job start Tue Mar 31 2020 17:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47376 * 270.00479 * 3 2 1 5 5 H 1.48502 * 109.46666 * 30.00702 * 3 2 1 6 6 H 1.48500 * 109.47082 * 150.00223 * 3 2 1 7 7 C 1.37882 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00061 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47247 * 175.10248 * 9 7 2 11 11 C 1.46897 * 111.00336 * 295.16920 * 10 9 7 12 12 C 1.53237 * 109.34203 * 187.25562 * 11 10 9 13 13 N 1.47083 * 108.51783 * 306.16175 * 12 11 10 14 14 C 1.34771 * 120.88385 * 231.18440 * 13 12 11 15 15 O 1.21593 * 120.00432 * 184.98853 * 14 13 12 16 16 N 1.34776 * 119.99976 * 4.99848 * 14 13 12 17 17 C 1.46502 * 120.00417 * 174.83878 * 16 14 13 18 18 H 1.09003 * 109.53157 * 324.89963 * 17 16 14 19 19 C 1.53036 * 109.50380 * 84.99449 * 17 16 14 20 20 N 1.46849 * 109.52751 * 179.12288 * 19 17 16 21 21 C 1.46851 * 111.19561 * 298.26364 * 20 19 17 22 22 C 1.53039 * 109.52560 * 61.73734 * 21 20 19 23 23 C 1.53110 * 109.50506 * 204.79993 * 17 16 14 24 24 F 1.39897 * 109.52285 * 62.50115 * 23 17 16 25 25 F 1.39899 * 109.58020 * 302.33853 * 23 17 16 26 26 C 1.47083 * 118.23380 * 51.46385 * 13 12 11 27 27 C 1.46907 * 110.99942 * 59.46529 * 10 9 7 28 28 H 0.96999 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46793 * 55.10508 * 9 7 2 30 30 H 1.09001 * 109.46836 * 295.10629 * 9 7 2 31 31 H 1.08999 * 109.49476 * 67.28964 * 11 10 9 32 32 H 1.09000 * 109.48907 * 307.21072 * 11 10 9 33 33 H 1.09004 * 109.63077 * 186.45588 * 12 11 10 34 34 H 1.08995 * 109.63301 * 65.87465 * 12 11 10 35 35 H 0.97000 * 119.99731 * 354.83553 * 16 14 13 36 36 H 1.08998 * 109.46252 * 59.10738 * 19 17 16 37 37 H 1.09000 * 109.46680 * 299.14001 * 19 17 16 38 38 H 1.00903 * 110.99703 * 62.35298 * 20 19 17 39 39 H 1.08999 * 109.45879 * 181.75242 * 21 20 19 40 40 H 1.09004 * 109.46033 * 301.71888 * 21 20 19 41 41 H 1.08999 * 109.50430 * 60.75938 * 22 21 20 42 42 H 1.08999 * 109.49951 * 180.84325 * 22 21 20 43 43 H 1.08998 * 109.63273 * 68.24997 * 26 13 12 44 44 H 1.09005 * 109.62473 * 188.82910 * 26 13 12 45 45 H 1.09002 * 109.49159 * 292.70570 * 27 10 9 46 46 H 1.09005 * 109.48827 * 52.75893 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5740 0.1166 11 6 3.6274 -3.1566 1.4122 12 6 4.3064 -4.5212 1.5700 13 7 3.9748 -5.3462 0.3983 14 6 3.4833 -6.5923 0.5464 15 8 3.2999 -7.2937 -0.4298 16 7 3.1948 -7.0611 1.7767 17 6 2.5558 -8.3705 1.9305 18 1 1.8614 -8.5361 1.1068 19 6 3.6256 -9.4649 1.9248 20 7 2.9875 -10.7758 2.1000 21 6 2.2895 -10.8586 3.3893 22 6 1.1798 -9.8058 3.4387 23 6 1.7942 -8.4149 3.2580 24 9 0.7784 -7.4531 3.2466 25 9 2.6749 -8.1523 4.3128 26 6 4.1997 -4.7774 -0.9393 27 6 3.5193 -3.4005 -0.9982 28 1 -0.4850 0.8400 0.0004 29 1 3.8751 -0.6064 0.8418 30 1 3.8744 -0.7578 -0.9318 31 1 2.5454 -3.2814 1.4564 32 1 3.9506 -2.4945 2.2156 33 1 3.9437 -5.0083 2.4752 34 1 5.3865 -4.3881 1.6302 35 1 3.4103 -6.5316 2.5603 36 1 4.3275 -9.2908 2.7403 37 1 4.1603 -9.4452 0.9752 38 1 2.3604 -10.9778 1.3357 39 1 1.8537 -11.8511 3.5033 40 1 2.9977 -10.6779 4.1980 41 1 0.4638 -9.9940 2.6387 42 1 0.6717 -9.8575 4.4016 43 1 5.2697 -4.6684 -1.1157 44 1 3.7664 -5.4340 -1.6939 45 1 2.4389 -3.5219 -0.9204 46 1 3.7638 -2.9151 -1.9430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892157734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:47 Heat of formation + Delta-G solvation = -104.171438 kcal Electronic energy + Delta-G solvation = -30374.428014 eV Core-core repulsion = 25970.090773 eV Total energy + Delta-G solvation = -4404.337241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -49.34512 -47.31567 -40.41764 -38.69498 -37.57606 -34.73615 -34.49432 -32.32436 -31.45202 -30.86294 -29.73658 -28.30474 -25.55816 -24.10758 -23.82744 -23.11278 -22.11156 -21.19967 -20.58576 -19.40674 -18.36541 -17.71878 -17.51720 -16.85673 -16.48356 -16.34706 -15.75426 -15.32162 -15.04217 -14.91722 -14.58552 -14.46113 -14.13449 -14.10913 -13.99081 -13.70131 -13.58984 -13.52707 -13.18122 -12.81946 -12.67670 -12.52214 -12.43859 -12.29539 -12.04206 -11.63829 -11.40634 -11.27295 -11.04180 -10.90671 -10.66941 -10.53850 -10.36929 -10.02761 -9.97680 -9.77218 -9.56994 -8.85490 -8.65872 -8.38272 -7.33475 -6.15864 -4.17100 2.46301 3.12893 3.23493 3.24576 3.31379 3.33539 3.52997 3.65079 3.86096 3.99838 4.13314 4.33866 4.34295 4.68295 4.74912 4.78146 4.95046 5.04605 5.15930 5.20154 5.21274 5.28058 5.41047 5.44888 5.45209 5.64820 5.68799 5.83097 5.89619 6.05418 6.14296 6.30691 6.43608 6.55999 6.57220 6.70030 6.82959 6.85454 6.95472 6.98675 7.46550 7.86238 7.93991 7.95580 8.37427 8.57366 8.85851 9.45929 10.96945 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002985 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.510100 B = 9378.383323 C =10070.834840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.532 5.532 11 C 0.048 3.952 12 C 0.115 3.885 13 N -0.619 5.619 14 C 0.714 3.286 15 O -0.593 6.593 16 N -0.742 5.742 17 C 0.098 3.902 18 H 0.113 0.887 19 C 0.048 3.952 20 N -0.677 5.677 21 C 0.055 3.945 22 C -0.197 4.197 23 C 0.281 3.719 24 F -0.190 7.190 25 F -0.194 7.194 26 C 0.134 3.866 27 C 0.047 3.953 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.348 0.652 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -20.300 7.724 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.256 5.256 11 C -0.082 4.082 12 C -0.008 4.008 13 N -0.356 5.356 14 C 0.416 3.584 15 O -0.472 6.472 16 N -0.401 5.401 17 C -0.012 4.012 18 H 0.131 0.869 19 C -0.083 4.083 20 N -0.306 5.306 21 C -0.075 4.075 22 C -0.237 4.237 23 C 0.244 3.756 24 F -0.171 7.171 25 F -0.175 7.175 26 C 0.011 3.989 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.167 0.833 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.592 -20.936 7.223 23.412 hybrid contribution -1.544 2.177 0.506 2.717 sum 6.048 -18.759 7.729 21.171 Atomic orbital electron populations 1.69929 1.06413 1.27081 1.50088 1.24987 0.94701 0.99277 0.94078 0.86786 0.80355 0.83488 0.78691 1.20141 1.21308 1.18767 1.21682 0.90629 0.94693 1.52320 0.90837 1.20220 0.94680 0.85340 0.97085 1.62411 1.58481 1.03862 1.00868 1.22246 0.99022 0.93334 0.93588 1.21857 1.00456 0.91778 0.86726 1.47326 1.66902 1.12836 1.08519 1.15693 0.78029 0.81787 0.82933 1.90887 1.60849 1.57595 1.37882 1.45016 1.66980 1.19981 1.08076 1.22584 0.97059 0.85753 0.95770 0.86928 1.22553 0.95899 0.84927 1.04894 1.60606 1.36620 1.28896 1.04440 1.22138 0.94003 0.98114 0.93198 1.23387 1.01419 0.92494 1.06417 1.21423 0.80093 0.88201 0.85840 1.93090 1.60687 1.66468 1.96843 1.93006 1.69725 1.95029 1.59724 1.21836 1.00406 0.94254 0.82356 1.22409 0.98552 0.91745 0.95543 0.92614 0.95034 0.95512 0.93257 0.90346 0.91325 0.90791 0.76153 0.89691 0.88189 0.83305 0.88780 0.89572 0.88298 0.88200 0.91412 0.89261 0.93221 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 20.99 27.57 -169.99 -4.69 16.30 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -5.98 6.40 56.52 0.36 -5.62 16 7 C -0.55 -15.11 8.32 -34.44 -0.29 -15.40 16 8 H 0.07 2.22 6.12 -52.49 -0.32 1.89 16 9 C 0.15 3.53 4.20 -4.98 -0.02 3.51 16 10 N -0.53 -10.47 4.83 -235.47 -1.14 -11.61 16 11 C 0.05 0.85 5.25 -3.70 -0.02 0.83 16 12 C 0.12 1.61 6.59 -3.60 -0.02 1.59 16 13 N -0.62 -9.65 3.00 -177.91 -0.53 -10.18 16 14 C 0.71 11.27 8.27 -86.92 -0.72 10.55 16 15 O -0.59 -10.85 15.50 5.28 0.08 -10.77 16 16 N -0.74 -9.43 4.93 -58.60 -0.29 -9.72 16 17 C 0.10 1.05 2.13 -67.85 -0.14 0.91 16 18 H 0.11 1.34 7.66 -51.93 -0.40 0.94 16 19 C 0.05 0.45 6.02 -3.83 -0.02 0.42 16 20 N -0.68 -4.94 6.87 -113.81 -0.78 -5.72 16 21 C 0.06 0.32 6.44 -3.83 -0.02 0.30 16 22 C -0.20 -1.31 5.60 -26.65 -0.15 -1.46 16 23 C 0.28 2.82 1.72 -26.61 -0.05 2.77 16 24 F -0.19 -2.49 17.03 2.25 0.04 -2.45 16 25 F -0.19 -2.04 15.78 2.25 0.04 -2.00 16 26 C 0.13 2.15 6.61 -3.36 -0.02 2.13 16 27 C 0.05 0.88 5.17 -3.46 -0.02 0.86 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.03 0.73 6.78 -51.93 -0.35 0.38 16 30 H 0.03 0.62 7.81 -51.93 -0.41 0.21 16 31 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 32 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.07 0.81 5.64 -51.93 -0.29 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 4.70 5.73 -40.82 -0.23 4.47 16 36 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.35 2.21 8.86 -39.29 -0.35 1.86 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.55 7.88 -51.93 -0.41 0.14 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 45 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 46 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -32.44 360.33 -9.46 -41.90 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.80 Total: 6.23 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.59 Total: 8.96 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -1.97 Total: -63.60 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.69 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.44 -9.46 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892157734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.275 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds