Wall clock time and date at job start Tue Mar 31 2020 17:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47376 * 270.00479 * 3 2 1 5 5 H 1.48502 * 109.46666 * 30.00702 * 3 2 1 6 6 H 1.48500 * 109.47082 * 150.00223 * 3 2 1 7 7 C 1.37882 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00061 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47247 * 175.10248 * 9 7 2 11 11 C 1.46897 * 111.00336 * 295.16920 * 10 9 7 12 12 C 1.53237 * 109.34203 * 187.25562 * 11 10 9 13 13 N 1.47083 * 108.51783 * 306.16175 * 12 11 10 14 14 C 1.34771 * 120.88385 * 231.18440 * 13 12 11 15 15 O 1.21593 * 120.00432 * 184.98853 * 14 13 12 16 16 N 1.34776 * 119.99976 * 4.99848 * 14 13 12 17 17 C 1.46502 * 120.00417 * 174.83878 * 16 14 13 18 18 H 1.09003 * 109.53157 * 324.89963 * 17 16 14 19 19 C 1.53036 * 109.50380 * 84.99449 * 17 16 14 20 20 N 1.46849 * 109.52751 * 179.12288 * 19 17 16 21 21 C 1.46851 * 111.19561 * 298.26364 * 20 19 17 22 22 C 1.53039 * 109.52560 * 61.73734 * 21 20 19 23 23 C 1.53110 * 109.50506 * 204.79993 * 17 16 14 24 24 F 1.39897 * 109.52285 * 62.50115 * 23 17 16 25 25 F 1.39899 * 109.58020 * 302.33853 * 23 17 16 26 26 C 1.47083 * 118.23380 * 51.46385 * 13 12 11 27 27 C 1.46907 * 110.99942 * 59.46529 * 10 9 7 28 28 H 0.96999 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46793 * 55.10508 * 9 7 2 30 30 H 1.09001 * 109.46836 * 295.10629 * 9 7 2 31 31 H 1.08999 * 109.49476 * 67.28964 * 11 10 9 32 32 H 1.09000 * 109.48907 * 307.21072 * 11 10 9 33 33 H 1.09004 * 109.63077 * 186.45588 * 12 11 10 34 34 H 1.08995 * 109.63301 * 65.87465 * 12 11 10 35 35 H 0.97000 * 119.99731 * 354.83553 * 16 14 13 36 36 H 1.08998 * 109.46252 * 59.10738 * 19 17 16 37 37 H 1.09000 * 109.46680 * 299.14001 * 19 17 16 38 38 H 1.00903 * 110.99703 * 62.35298 * 20 19 17 39 39 H 1.08999 * 109.45879 * 181.75242 * 21 20 19 40 40 H 1.09004 * 109.46033 * 301.71888 * 21 20 19 41 41 H 1.08999 * 109.50430 * 60.75938 * 22 21 20 42 42 H 1.08999 * 109.49951 * 180.84325 * 22 21 20 43 43 H 1.08998 * 109.63273 * 68.24997 * 26 13 12 44 44 H 1.09005 * 109.62473 * 188.82910 * 26 13 12 45 45 H 1.09002 * 109.49159 * 292.70570 * 27 10 9 46 46 H 1.09005 * 109.48827 * 52.75893 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5740 0.1166 11 6 3.6274 -3.1566 1.4122 12 6 4.3064 -4.5212 1.5700 13 7 3.9748 -5.3462 0.3983 14 6 3.4833 -6.5923 0.5464 15 8 3.2999 -7.2937 -0.4298 16 7 3.1948 -7.0611 1.7767 17 6 2.5558 -8.3705 1.9305 18 1 1.8614 -8.5361 1.1068 19 6 3.6256 -9.4649 1.9248 20 7 2.9875 -10.7758 2.1000 21 6 2.2895 -10.8586 3.3893 22 6 1.1798 -9.8058 3.4387 23 6 1.7942 -8.4149 3.2580 24 9 0.7784 -7.4531 3.2466 25 9 2.6749 -8.1523 4.3128 26 6 4.1997 -4.7774 -0.9393 27 6 3.5193 -3.4005 -0.9982 28 1 -0.4850 0.8400 0.0004 29 1 3.8751 -0.6064 0.8418 30 1 3.8744 -0.7578 -0.9318 31 1 2.5454 -3.2814 1.4564 32 1 3.9506 -2.4945 2.2156 33 1 3.9437 -5.0083 2.4752 34 1 5.3865 -4.3881 1.6302 35 1 3.4103 -6.5316 2.5603 36 1 4.3275 -9.2908 2.7403 37 1 4.1603 -9.4452 0.9752 38 1 2.3604 -10.9778 1.3357 39 1 1.8537 -11.8511 3.5033 40 1 2.9977 -10.6779 4.1980 41 1 0.4638 -9.9940 2.6387 42 1 0.6717 -9.8575 4.4016 43 1 5.2697 -4.6684 -1.1157 44 1 3.7664 -5.4340 -1.6939 45 1 2.4389 -3.5219 -0.9204 46 1 3.7638 -2.9151 -1.9430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892157734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:43 Heat of formation + Delta-G solvation = -130.308490 kcal Electronic energy + Delta-G solvation = -30375.561402 eV Core-core repulsion = 25970.090773 eV Total energy + Delta-G solvation = -4405.470629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.21627 -48.20972 -41.63889 -39.68782 -38.81688 -36.08663 -35.73808 -34.35077 -32.19216 -32.07719 -30.93695 -29.83731 -27.20252 -24.91742 -24.80285 -24.38052 -23.65579 -22.06036 -21.96035 -20.69863 -19.65020 -18.85338 -18.57768 -18.40039 -17.46544 -17.34077 -16.80428 -16.61186 -16.17566 -16.03580 -15.90753 -15.83901 -15.78575 -15.28386 -14.97719 -14.85132 -14.57349 -14.47384 -14.36888 -14.09236 -13.89049 -13.81174 -13.60103 -13.31429 -13.10111 -13.05076 -12.79532 -12.50435 -12.29474 -12.21851 -12.19590 -12.05000 -11.75450 -11.69304 -11.66384 -11.28770 -10.82256 -10.77190 -9.82633 -9.46901 -9.06251 -8.34063 -6.40852 1.34742 1.36109 1.37240 1.48801 1.95150 2.32182 2.38840 2.60122 2.80832 3.01016 3.12584 3.19682 3.31437 3.35483 3.65006 3.87790 3.94713 4.04481 4.10793 4.19543 4.29132 4.31872 4.45630 4.48582 4.52665 4.55093 4.70702 4.74809 4.80629 4.85801 4.96211 5.00704 5.04057 5.05466 5.14411 5.16282 5.34609 5.45212 5.72524 5.81682 6.03058 6.25865 6.29031 6.29881 6.66120 6.72543 7.26585 7.33614 8.82557 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002985 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.510100 B = 9378.383323 C =10070.834840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.552 4.552 8 H 0.025 0.975 9 C 0.159 3.841 10 N -0.521 5.521 11 C 0.047 3.953 12 C 0.125 3.875 13 N -0.626 5.626 14 C 0.710 3.290 15 O -0.622 6.622 16 N -0.734 5.734 17 C 0.095 3.905 18 H 0.099 0.901 19 C 0.062 3.938 20 N -0.677 5.677 21 C 0.059 3.941 22 C -0.189 4.189 23 C 0.276 3.724 24 F -0.211 7.211 25 F -0.196 7.196 26 C 0.145 3.855 27 C 0.052 3.948 28 H 0.266 0.734 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.005 0.995 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.354 0.646 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.003 0.997 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -20.929 8.904 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.591 4.591 8 H 0.044 0.956 9 C 0.032 3.968 10 N -0.244 5.244 11 C -0.082 4.082 12 C 0.002 3.998 13 N -0.362 5.362 14 C 0.412 3.588 15 O -0.503 6.503 16 N -0.393 5.393 17 C -0.014 4.014 18 H 0.117 0.883 19 C -0.070 4.070 20 N -0.306 5.306 21 C -0.071 4.071 22 C -0.229 4.229 23 C 0.239 3.761 24 F -0.192 7.192 25 F -0.177 7.177 26 C 0.022 3.978 27 C -0.077 4.077 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.022 0.978 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.005 -21.603 8.436 25.258 hybrid contribution -2.375 2.275 0.149 3.293 sum 7.630 -19.327 8.586 22.483 Atomic orbital electron populations 1.70102 1.08623 1.28244 1.52130 1.26014 0.95532 1.03769 0.93695 0.85604 0.79622 0.77751 0.79278 1.19218 1.21333 1.16109 1.21912 0.93027 0.92872 1.51305 0.95628 1.20113 0.91444 0.87680 0.97593 1.62457 1.57396 1.02670 1.01866 1.22320 0.96843 0.95995 0.93052 1.21900 1.01632 0.89233 0.87017 1.47404 1.66976 1.13050 1.08801 1.15830 0.77836 0.81726 0.83428 1.90862 1.61964 1.58407 1.39034 1.44984 1.66329 1.20756 1.07199 1.22765 0.97394 0.85288 0.95917 0.88307 1.22352 0.95309 0.85247 1.04051 1.60623 1.37228 1.27223 1.05505 1.22231 0.93591 0.99057 0.92172 1.23432 1.01783 0.90144 1.07588 1.21764 0.79654 0.89436 0.85203 1.93051 1.61624 1.67665 1.96908 1.92998 1.69815 1.95173 1.59687 1.21691 1.01341 0.91988 0.82771 1.22373 0.96051 0.93654 0.95663 0.92545 0.94150 0.94787 0.97640 0.89047 0.89014 0.87959 0.75531 0.89393 0.89874 0.82623 0.86170 0.89690 0.87344 0.86820 0.88765 0.89871 0.97831 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.01 0.44 5.47 84.66 0.46 0.91 16 3 Si 0.95 43.04 27.57 68.60 1.89 44.93 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.69 6.40 99.48 0.64 -9.06 16 7 C -0.55 -31.10 8.32 25.60 0.21 -30.89 16 8 H 0.03 1.65 6.12 -2.91 -0.02 1.63 16 9 C 0.16 7.23 4.20 85.56 0.36 7.59 16 10 N -0.52 -20.19 4.83 -898.88 -4.34 -24.53 16 11 C 0.05 1.67 5.25 86.38 0.45 2.13 16 12 C 0.12 3.28 6.59 86.35 0.57 3.85 16 13 N -0.63 -19.11 3.00 -835.03 -2.51 -21.62 16 14 C 0.71 22.36 8.27 179.06 1.48 23.85 16 15 O -0.62 -23.03 15.50 -4.01 -0.06 -23.09 16 16 N -0.73 -18.41 4.93 -457.57 -2.26 -20.66 16 17 C 0.10 2.02 2.13 45.04 0.10 2.11 16 18 H 0.10 2.39 7.66 -2.39 -0.02 2.37 16 19 C 0.06 1.08 6.02 86.32 0.52 1.60 16 20 N -0.68 -8.70 6.87 -513.99 -3.53 -12.23 16 21 C 0.06 0.54 6.44 86.33 0.56 1.10 16 22 C -0.19 -2.16 5.60 30.65 0.17 -1.99 16 23 C 0.28 5.30 1.72 30.67 0.05 5.35 16 24 F -0.21 -5.54 17.03 44.97 0.77 -4.77 16 25 F -0.20 -3.86 15.78 44.97 0.71 -3.15 16 26 C 0.15 4.56 6.61 86.50 0.57 5.14 16 27 C 0.05 2.00 5.17 86.54 0.45 2.44 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.04 1.78 6.78 -2.39 -0.02 1.77 16 30 H 0.03 1.51 7.81 -2.39 -0.02 1.49 16 31 H 0.01 0.23 7.11 -2.39 -0.02 0.21 16 32 H 0.09 2.98 8.06 -2.39 -0.02 2.96 16 33 H 0.09 1.99 5.64 -2.38 -0.01 1.97 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.41 9.13 5.73 -92.71 -0.53 8.60 16 36 H 0.09 1.49 7.88 -2.39 -0.02 1.47 16 37 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.35 3.95 8.86 -89.69 -0.79 3.16 16 39 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.85 7.88 -2.38 -0.02 0.83 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.08 2.74 7.09 -2.38 -0.02 2.72 16 45 H 0.00 0.16 6.62 -2.39 -0.02 0.14 16 46 H 0.09 3.12 8.11 -2.38 -0.02 3.10 16 Total: -1.00 -73.78 360.33 -3.45 -77.23 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.37 Total: 24.12 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 5.95 Total: 23.18 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -12.34 Total: -138.44 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 1.48 Total: -7.92 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.89 Total: 44.93 kcal Total: -73.78 -3.45 -77.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892157734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.081 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds