Wall clock time and date at job start Tue Mar 31 2020 18:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 C 1.53006 * 109.47022 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47098 * 177.61994 * 4 3 2 6 6 C 1.37610 * 127.15877 * 84.87732 * 5 4 3 7 7 C 1.47778 * 126.46846 * 0.04002 * 6 5 4 8 8 C 1.39960 * 120.20498 * 179.71298 * 7 6 5 9 9 C 1.38565 * 117.87578 * 179.72364 * 8 7 6 10 10 C 1.38789 * 118.09109 * 0.26785 * 9 8 7 11 11 N 1.31960 * 120.11340 * 0.02562 * 10 9 8 12 12 N 1.28354 * 122.32868 * 0.02562 * 11 10 9 13 13 N 1.31282 * 107.06243 * 179.77041 * 6 5 4 14 14 N 1.28519 * 109.91631 * 0.23180 * 13 6 5 15 15 C 1.31481 * 110.06484 * 359.97438 * 14 13 6 16 16 N 1.38293 * 126.36472 * 180.02562 * 15 14 13 17 17 C 1.46905 * 111.00046 * 294.64577 * 16 15 14 18 18 C 1.46897 * 111.00110 * 58.59957 * 16 15 14 19 19 H 1.09000 * 109.47453 * 300.00162 * 18 16 15 20 20 C 1.52997 * 109.47137 * 60.00212 * 18 16 15 21 21 C 1.50701 * 109.47253 * 179.97438 * 18 16 15 22 22 H 1.07998 * 119.99710 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99910 * 179.97438 * 21 18 16 24 24 N 1.31516 * 119.99754 * 180.02562 * 23 21 18 25 25 Si 1.86801 * 119.99973 * 0.02562 * 23 21 18 26 26 H 1.48501 * 109.47190 * 89.99787 * 25 23 21 27 27 H 1.48494 * 109.46896 * 209.99625 * 25 23 21 28 28 H 1.48497 * 109.47160 * 329.99392 * 25 23 21 29 29 H 1.09000 * 109.47248 * 299.99532 * 1 2 3 30 30 H 1.09000 * 109.47101 * 59.99731 * 1 2 3 31 31 H 1.08993 * 109.47336 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46641 * 60.00932 * 3 2 1 33 33 H 1.08992 * 109.47473 * 300.00365 * 3 2 1 34 34 H 1.09004 * 109.46827 * 57.62120 * 4 3 2 35 35 H 1.09001 * 109.47090 * 297.62042 * 4 3 2 36 36 H 1.08002 * 121.06034 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.95712 * 180.29661 * 9 8 7 38 38 H 1.07999 * 119.94576 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46954 * 66.13016 * 17 16 15 40 40 H 1.09001 * 109.46761 * 186.12866 * 17 16 15 41 41 H 1.09004 * 109.46793 * 306.13078 * 17 16 15 42 42 H 1.08999 * 109.47398 * 60.00017 * 20 18 16 43 43 H 1.09001 * 109.47198 * 180.02562 * 20 18 16 44 44 H 1.09002 * 109.47008 * 299.99967 * 20 18 16 45 45 H 0.97001 * 119.99497 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5217 -0.0567 6 6 4.3830 3.3656 1.0007 7 6 4.1028 3.0952 2.4263 8 6 4.4194 4.0499 3.3995 9 6 4.1305 3.7486 4.7208 10 6 3.5511 2.5185 4.9989 11 7 3.2905 1.6729 4.0199 12 7 3.5547 1.9410 2.7928 13 7 4.9245 4.4538 0.5047 14 7 5.0224 4.3510 -0.7727 15 6 4.5495 3.1900 -1.1693 16 7 4.4917 2.7301 -2.4723 17 6 3.5750 3.5471 -3.2787 18 6 5.8302 2.6894 -3.0761 19 1 6.2587 3.6916 -3.0779 20 6 6.7274 1.7527 -2.2647 21 6 5.7274 2.1838 -4.4920 22 1 4.7639 1.9197 -4.9024 23 6 6.8631 2.0595 -5.2639 24 7 6.7733 1.6188 -6.4997 25 14 8.5294 2.5171 -4.5542 26 1 9.1372 1.3252 -3.9098 27 1 9.4166 2.9972 -5.6439 28 1 8.3589 3.5927 -3.5446 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8545 0.6071 -0.8671 35 1 3.8597 0.6812 0.9114 36 1 4.8708 4.9930 3.1289 37 1 4.3495 4.4509 5.5114 38 1 3.3137 2.2525 6.0184 39 1 3.9785 4.5547 -3.3784 40 1 3.4643 3.1006 -4.2669 41 1 2.6021 3.5921 -2.7891 42 1 6.2990 0.7504 -2.2628 43 1 7.7208 1.7227 -2.7124 44 1 6.8019 2.1179 -1.2403 45 1 7.5724 1.5311 -7.0426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909176457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:02 Heat of formation + Delta-G solvation = 126.734104 kcal Electronic energy + Delta-G solvation = -29360.611519 eV Core-core repulsion = 25416.976279 eV Total energy + Delta-G solvation = -3943.635239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.86719 -41.12353 -38.05180 -37.42258 -35.15244 -33.79304 -33.30726 -32.71510 -30.48236 -29.86467 -29.27120 -26.52489 -25.85193 -25.17000 -24.79671 -24.45864 -23.51321 -21.94850 -21.15268 -19.64788 -17.90799 -17.36591 -17.19787 -16.84997 -16.68905 -16.28784 -16.03108 -15.59372 -15.30516 -15.18129 -14.95908 -14.52908 -14.18008 -13.78122 -13.56817 -13.48279 -13.33980 -12.72710 -12.42855 -12.28557 -11.90251 -11.82882 -11.67758 -11.40066 -11.25945 -11.19252 -10.89895 -10.81308 -10.74512 -10.63910 -10.58824 -10.26366 -10.06362 -9.96709 -9.76877 -9.63665 -9.30429 -8.69062 -8.62806 -8.05421 -6.17270 -4.18481 0.18403 0.45074 1.90183 2.18626 2.81931 3.22634 3.27095 3.35089 3.37425 3.38374 3.69348 4.02133 4.18727 4.32435 4.35618 4.37936 4.56537 4.68836 4.80546 4.89606 5.13785 5.18728 5.21762 5.24859 5.27980 5.31938 5.43161 5.52393 5.54545 5.68583 5.71920 5.84137 5.93379 6.12369 6.18018 6.19059 6.26630 6.35793 6.58940 6.66097 6.75725 6.98750 7.03343 7.35346 7.54889 7.83094 8.28071 8.45193 8.74203 8.85380 9.42432 10.94486 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003922 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.798669 B = 7137.275643 C = 8401.746081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.114 3.886 5 N -0.444 5.444 6 C 0.187 3.813 7 C 0.159 3.841 8 C -0.082 4.082 9 C -0.113 4.113 10 C 0.037 3.963 11 N -0.233 5.233 12 N -0.234 5.234 13 N -0.250 5.250 14 N -0.309 5.309 15 C 0.398 3.602 16 N -0.463 5.463 17 C 0.050 3.950 18 C 0.195 3.805 19 H 0.023 0.977 20 C -0.148 4.148 21 C -0.514 4.514 22 H 0.088 0.912 23 C 0.079 3.921 24 N -0.892 5.892 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.293 1.293 28 H -0.264 1.264 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.039 0.961 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 2.147 21.557 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C -0.015 4.015 4 C -0.009 4.009 5 N -0.136 5.136 6 C -0.077 4.077 7 C 0.014 3.986 8 C -0.112 4.112 9 C -0.142 4.142 10 C -0.127 4.127 11 N -0.074 5.074 12 N -0.079 5.079 13 N -0.096 5.096 14 N -0.155 5.155 15 C 0.043 3.957 16 N -0.190 5.190 17 C -0.097 4.097 18 C 0.090 3.910 19 H 0.041 0.959 20 C -0.205 4.205 21 C -0.552 4.552 22 H 0.106 0.894 23 C -0.124 4.124 24 N -0.529 5.529 25 Si 0.708 3.292 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.189 1.189 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.193 0.807 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.865 1.268 20.823 23.077 hybrid contribution 1.105 1.211 0.834 1.840 sum -8.760 2.480 21.657 23.493 Atomic orbital electron populations 1.22736 0.80559 1.02886 0.99937 1.87817 1.19972 1.26568 1.95441 1.22545 0.92826 0.85535 1.00597 1.21706 0.92267 0.79888 1.07038 1.46245 1.45515 1.15761 1.06088 1.21630 1.07772 0.90625 0.87702 1.19758 0.96276 0.92846 0.89728 1.22372 0.96095 1.00592 0.92129 1.22415 0.96590 0.97917 0.97249 1.24427 0.95341 0.91598 1.01345 1.73069 1.12358 1.27228 0.94747 1.73332 1.08838 1.15110 1.10635 1.74277 1.14267 1.17901 1.03129 1.74861 1.21160 1.16235 1.03286 1.22894 0.95730 0.87529 0.89560 1.58985 1.15114 1.50269 0.94588 1.22285 0.92942 0.95803 0.98651 1.19881 0.81142 0.95676 0.94332 0.95892 1.22207 0.99812 1.01346 0.97152 1.20826 0.96352 1.44805 0.93222 0.89409 1.24815 0.98656 0.94294 0.94667 1.69851 1.29592 1.45577 1.07876 0.86981 0.84503 0.79311 0.78360 1.20417 1.22057 1.18940 0.94224 0.93939 0.89299 0.93024 0.92805 0.86582 0.86808 0.81858 0.82496 0.80701 0.94184 0.88192 0.93495 0.91958 0.93068 0.95976 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.21 10.70 -35.23 -0.38 -5.58 16 3 C 0.06 0.86 6.26 37.16 0.23 1.10 16 4 C 0.11 1.72 5.86 -4.04 -0.02 1.70 16 5 N -0.44 -7.54 2.83 -114.73 -0.32 -7.86 16 6 C 0.19 3.04 7.83 -153.74 -1.20 1.84 16 7 C 0.16 2.10 6.83 -82.85 -0.57 1.53 16 8 C -0.08 -0.79 9.84 -38.82 -0.38 -1.17 16 9 C -0.11 -0.74 10.20 -39.26 -0.40 -1.14 16 10 C 0.04 0.28 11.31 -17.29 -0.20 0.09 16 11 N -0.23 -2.71 11.50 30.59 0.35 -2.36 16 12 N -0.23 -3.13 8.82 33.31 0.29 -2.84 16 13 N -0.25 -4.55 11.93 32.59 0.39 -4.17 16 14 N -0.31 -6.34 12.10 30.28 0.37 -5.98 16 15 C 0.40 7.77 5.01 -319.09 -1.60 6.17 16 16 N -0.46 -9.55 4.61 -176.13 -0.81 -10.36 16 17 C 0.05 0.94 9.14 60.07 0.55 1.49 16 18 C 0.20 4.62 1.58 -68.87 -0.11 4.51 16 19 H 0.02 0.60 7.12 -51.93 -0.37 0.23 16 20 C -0.15 -3.34 8.54 37.16 0.32 -3.02 16 21 C -0.51 -13.72 8.53 -34.44 -0.29 -14.02 16 22 H 0.09 2.48 6.64 -52.49 -0.35 2.13 16 23 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 24 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 25 Si 0.88 21.67 24.37 -169.99 -4.14 17.53 16 26 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.86 8.11 -51.93 -0.42 1.44 16 35 H 0.11 1.68 6.60 -51.93 -0.34 1.33 16 36 H 0.16 1.41 7.93 -52.49 -0.42 1.00 16 37 H 0.16 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.95 6.32 -51.93 -0.33 1.62 16 41 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 44 H 0.02 0.47 7.22 -51.93 -0.38 0.09 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -32.69 371.10 -6.71 -39.40 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.16 Total: -0.55 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.66 Total: 2.64 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 1.04 Total: -59.02 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.38 Total: -5.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.69 -6.71 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909176457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.129 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds