Wall clock time and date at job start Tue Mar 31 2020 18:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 C 1.53006 * 109.47022 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47098 * 177.61994 * 4 3 2 6 6 C 1.37610 * 127.15877 * 84.87732 * 5 4 3 7 7 C 1.47778 * 126.46846 * 0.04002 * 6 5 4 8 8 C 1.39960 * 120.20498 * 179.71298 * 7 6 5 9 9 C 1.38565 * 117.87578 * 179.72364 * 8 7 6 10 10 C 1.38789 * 118.09109 * 0.26785 * 9 8 7 11 11 N 1.31960 * 120.11340 * 0.02562 * 10 9 8 12 12 N 1.28354 * 122.32868 * 0.02562 * 11 10 9 13 13 N 1.31282 * 107.06243 * 179.77041 * 6 5 4 14 14 N 1.28519 * 109.91631 * 0.23180 * 13 6 5 15 15 C 1.31481 * 110.06484 * 359.97438 * 14 13 6 16 16 N 1.38293 * 126.36472 * 180.02562 * 15 14 13 17 17 C 1.46905 * 111.00046 * 294.64577 * 16 15 14 18 18 C 1.46897 * 111.00110 * 58.59957 * 16 15 14 19 19 H 1.09000 * 109.47453 * 300.00162 * 18 16 15 20 20 C 1.52997 * 109.47137 * 60.00212 * 18 16 15 21 21 C 1.50701 * 109.47253 * 179.97438 * 18 16 15 22 22 H 1.07998 * 119.99710 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99910 * 179.97438 * 21 18 16 24 24 N 1.31516 * 119.99754 * 180.02562 * 23 21 18 25 25 Si 1.86801 * 119.99973 * 0.02562 * 23 21 18 26 26 H 1.48501 * 109.47190 * 89.99787 * 25 23 21 27 27 H 1.48494 * 109.46896 * 209.99625 * 25 23 21 28 28 H 1.48497 * 109.47160 * 329.99392 * 25 23 21 29 29 H 1.09000 * 109.47248 * 299.99532 * 1 2 3 30 30 H 1.09000 * 109.47101 * 59.99731 * 1 2 3 31 31 H 1.08993 * 109.47336 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46641 * 60.00932 * 3 2 1 33 33 H 1.08992 * 109.47473 * 300.00365 * 3 2 1 34 34 H 1.09004 * 109.46827 * 57.62120 * 4 3 2 35 35 H 1.09001 * 109.47090 * 297.62042 * 4 3 2 36 36 H 1.08002 * 121.06034 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.95712 * 180.29661 * 9 8 7 38 38 H 1.07999 * 119.94576 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46954 * 66.13016 * 17 16 15 40 40 H 1.09001 * 109.46761 * 186.12866 * 17 16 15 41 41 H 1.09004 * 109.46793 * 306.13078 * 17 16 15 42 42 H 1.08999 * 109.47398 * 60.00017 * 20 18 16 43 43 H 1.09001 * 109.47198 * 180.02562 * 20 18 16 44 44 H 1.09002 * 109.47008 * 299.99967 * 20 18 16 45 45 H 0.97001 * 119.99497 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5217 -0.0567 6 6 4.3830 3.3656 1.0007 7 6 4.1028 3.0952 2.4263 8 6 4.4194 4.0499 3.3995 9 6 4.1305 3.7486 4.7208 10 6 3.5511 2.5185 4.9989 11 7 3.2905 1.6729 4.0199 12 7 3.5547 1.9410 2.7928 13 7 4.9245 4.4538 0.5047 14 7 5.0224 4.3510 -0.7727 15 6 4.5495 3.1900 -1.1693 16 7 4.4917 2.7301 -2.4723 17 6 3.5750 3.5471 -3.2787 18 6 5.8302 2.6894 -3.0761 19 1 6.2587 3.6916 -3.0779 20 6 6.7274 1.7527 -2.2647 21 6 5.7274 2.1838 -4.4920 22 1 4.7639 1.9197 -4.9024 23 6 6.8631 2.0595 -5.2639 24 7 6.7733 1.6188 -6.4997 25 14 8.5294 2.5171 -4.5542 26 1 9.1372 1.3252 -3.9098 27 1 9.4166 2.9972 -5.6439 28 1 8.3589 3.5927 -3.5446 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8545 0.6071 -0.8671 35 1 3.8597 0.6812 0.9114 36 1 4.8708 4.9930 3.1289 37 1 4.3495 4.4509 5.5114 38 1 3.3137 2.2525 6.0184 39 1 3.9785 4.5547 -3.3784 40 1 3.4643 3.1006 -4.2669 41 1 2.6021 3.5921 -2.7891 42 1 6.2990 0.7504 -2.2628 43 1 7.7208 1.7227 -2.7124 44 1 6.8019 2.1179 -1.2403 45 1 7.5724 1.5311 -7.0426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909176457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:01 Heat of formation + Delta-G solvation = 104.052762 kcal Electronic energy + Delta-G solvation = -29361.595055 eV Core-core repulsion = 25416.976279 eV Total energy + Delta-G solvation = -3944.618776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.22604 -41.91390 -39.11861 -39.07710 -36.40703 -35.06127 -34.45378 -33.96289 -32.35338 -31.03030 -30.58779 -27.74474 -27.28574 -26.39258 -26.05928 -25.54104 -24.65767 -23.55022 -22.38523 -21.22568 -19.05810 -18.88539 -18.19448 -18.07742 -17.72591 -17.48973 -17.19892 -16.86428 -16.79612 -16.49013 -16.00495 -15.83357 -15.55792 -15.16125 -14.83838 -14.54797 -14.52537 -14.16926 -14.13522 -13.72258 -13.48281 -13.13377 -12.88094 -12.85830 -12.71775 -12.57593 -12.34366 -12.22817 -12.13611 -11.95361 -11.82763 -11.58156 -11.36511 -11.28178 -11.27680 -10.80012 -10.78633 -10.77343 -9.95487 -9.74255 -8.33419 -6.37488 -0.67495 -0.23041 0.66931 0.89384 1.25323 1.33658 1.41438 1.51372 2.26514 2.27498 2.50899 2.55583 2.96236 3.02334 3.26717 3.46688 3.57440 3.74430 3.78793 3.80055 3.89216 4.08728 4.11751 4.18009 4.20005 4.35503 4.38858 4.45656 4.47393 4.48978 4.54227 4.60656 4.67265 4.78101 4.80372 4.81886 4.88976 4.97555 5.02115 5.15640 5.19380 5.35473 5.43048 5.73437 6.01453 6.07723 6.46317 6.67543 7.26171 7.35377 7.50984 8.81509 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003922 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.798669 B = 7137.275643 C = 8401.746081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.076 3.924 4 C 0.118 3.882 5 N -0.442 5.442 6 C 0.212 3.788 7 C 0.127 3.873 8 C -0.087 4.087 9 C -0.086 4.086 10 C 0.051 3.949 11 N -0.266 5.266 12 N -0.255 5.255 13 N -0.271 5.271 14 N -0.336 5.336 15 C 0.380 3.620 16 N -0.463 5.463 17 C 0.054 3.946 18 C 0.203 3.797 19 H 0.004 0.996 20 C -0.139 4.139 21 C -0.509 4.509 22 H 0.063 0.937 23 C 0.032 3.968 24 N -0.933 5.933 25 Si 0.930 3.070 26 H -0.265 1.265 27 H -0.291 1.291 28 H -0.263 1.263 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.171 0.829 37 H 0.207 0.793 38 H 0.220 0.780 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 2.475 25.657 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.002 4.002 4 C -0.005 4.005 5 N -0.134 5.134 6 C -0.055 4.055 7 C -0.019 4.019 8 C -0.117 4.117 9 C -0.114 4.114 10 C -0.113 4.113 11 N -0.106 5.106 12 N -0.100 5.100 13 N -0.115 5.115 14 N -0.182 5.182 15 C 0.023 3.977 16 N -0.189 5.189 17 C -0.092 4.092 18 C 0.097 3.903 19 H 0.022 0.978 20 C -0.196 4.196 21 C -0.547 4.547 22 H 0.081 0.919 23 C -0.167 4.167 24 N -0.572 5.572 25 Si 0.758 3.242 26 H -0.191 1.191 27 H -0.218 1.218 28 H -0.188 1.188 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.189 0.811 37 H 0.224 0.776 38 H 0.236 0.764 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.247 1.593 24.941 27.011 hybrid contribution 1.052 1.098 -0.166 1.529 sum -9.196 2.691 24.775 26.563 Atomic orbital electron populations 1.22970 0.78665 1.04398 1.00714 1.87790 1.22058 1.26342 1.95547 1.22343 0.91760 0.85750 1.00355 1.21730 0.93278 0.78928 1.06533 1.46307 1.45301 1.16182 1.05606 1.22263 1.04926 0.89388 0.88891 1.19750 0.99018 0.94532 0.88557 1.22600 0.96004 1.00161 0.92907 1.22957 0.93703 0.97986 0.96803 1.25196 0.92861 0.91051 1.02215 1.73010 1.13879 1.28893 0.94842 1.73249 1.09345 1.15340 1.12041 1.74209 1.16084 1.18988 1.02206 1.74755 1.21891 1.16913 1.04623 1.22612 0.97690 0.88071 0.89310 1.58827 1.13596 1.50992 0.95467 1.22251 0.93894 0.94885 0.98214 1.19583 0.83086 0.94539 0.93134 0.97815 1.22067 0.99075 1.01192 0.97291 1.20982 0.95287 1.43636 0.94777 0.91887 1.25469 1.01910 0.94480 0.94873 1.69959 1.30616 1.47448 1.09205 0.86139 0.80850 0.79459 0.77790 1.19063 1.21776 1.18773 0.93165 0.93408 0.87498 0.92744 0.93394 0.87900 0.86350 0.81141 0.77563 0.76388 0.94980 0.89522 0.90866 0.91603 0.93647 0.95114 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.68 10.70 -148.98 -1.59 -12.27 16 3 C 0.08 2.07 6.26 71.98 0.45 2.52 16 4 C 0.12 3.57 5.86 86.38 0.51 4.08 16 5 N -0.44 -15.05 2.83 -516.88 -1.46 -16.51 16 6 C 0.21 6.78 7.83 136.17 1.07 7.85 16 7 C 0.13 3.17 6.83 41.92 0.29 3.46 16 8 C -0.09 -1.44 9.84 22.77 0.22 -1.21 16 9 C -0.09 -0.70 10.20 22.48 0.23 -0.47 16 10 C 0.05 0.54 11.31 84.81 0.96 1.50 16 11 N -0.27 -5.48 11.50 -57.13 -0.66 -6.14 16 12 N -0.26 -6.45 8.82 -48.54 -0.43 -6.88 16 13 N -0.27 -9.83 11.93 -50.82 -0.61 -10.44 16 14 N -0.34 -13.94 12.10 -58.10 -0.70 -14.64 16 15 C 0.38 14.99 5.01 260.19 1.30 16.29 16 16 N -0.46 -19.53 4.61 -711.14 -3.28 -22.81 16 17 C 0.05 2.10 9.14 127.69 1.17 3.27 16 18 C 0.20 9.81 1.58 44.17 0.07 9.88 16 19 H 0.00 0.22 7.12 -2.39 -0.02 0.20 16 20 C -0.14 -6.28 8.54 71.98 0.62 -5.66 16 21 C -0.51 -27.96 8.53 25.60 0.22 -27.74 16 22 H 0.06 3.72 6.64 -2.91 -0.02 3.70 16 23 C 0.03 1.82 5.45 84.66 0.46 2.28 16 24 N -0.93 -56.22 13.96 21.45 0.30 -55.92 16 25 Si 0.93 45.02 24.37 68.60 1.67 46.69 16 26 H -0.26 -12.20 6.87 99.48 0.68 -11.52 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.26 -12.59 6.53 99.48 0.65 -11.94 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.45 7.79 -2.39 -0.02 1.43 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 3.38 8.11 -2.38 -0.02 3.36 16 35 H 0.12 3.49 6.60 -2.39 -0.02 3.47 16 36 H 0.17 2.52 7.93 -2.91 -0.02 2.49 16 37 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 38 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 3.55 6.32 -2.39 -0.02 3.53 16 41 H 0.07 2.40 8.10 -2.38 -0.02 2.38 16 42 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.05 2.09 3.27 -2.39 -0.01 2.08 16 44 H 0.03 1.31 7.22 -2.39 -0.02 1.29 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -73.68 371.10 2.98 -70.70 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.93 Total: 10.40 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 8.81 Total: 17.82 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -6.84 Total: -133.35 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.59 Total: -12.27 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Total: -73.68 2.98 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909176457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.757 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds