Wall clock time and date at job start Tue Mar 31 2020 18:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50745 * 2 1 4 4 C 1.53047 * 109.49083 * 120.05499 * 2 1 3 5 5 N 1.46949 * 109.36785 * 178.37291 * 4 2 1 6 6 C 1.46900 * 111.00147 * 176.81460 * 5 4 2 7 7 C 1.53008 * 109.46921 * 287.91396 * 6 5 4 8 8 H 1.08995 * 109.46857 * 58.18161 * 7 6 5 9 9 O 1.42902 * 109.46879 * 298.18177 * 7 6 5 10 10 C 1.50693 * 109.47175 * 178.18222 * 7 6 5 11 11 H 1.08002 * 120.00125 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00114 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00206 * 0.02562 * 12 10 7 14 14 Si 1.86808 * 120.00329 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.46964 * 89.99931 * 14 12 10 16 16 H 1.48495 * 109.47178 * 210.00339 * 14 12 10 17 17 H 1.48507 * 109.46791 * 330.00203 * 14 12 10 18 18 C 1.46956 * 110.87736 * 300.67606 * 5 4 2 19 19 C 1.53057 * 109.36290 * 59.32403 * 18 5 4 20 20 N 1.46948 * 109.36043 * 301.59512 * 19 18 5 21 21 C 1.38508 * 111.00101 * 183.18842 * 20 19 18 22 22 N 1.31817 * 120.28038 * 295.37217 * 21 20 19 23 23 C 1.33750 * 121.30067 * 180.02562 * 22 21 20 24 24 C 1.34758 * 121.42980 * 0.28077 * 23 22 21 25 25 N 1.36979 * 119.84858 * 359.44546 * 24 23 22 26 26 C 1.34770 * 134.71577 * 180.20563 * 25 24 23 27 27 N 1.31079 * 107.59570 * 180.30582 * 26 25 24 28 28 N 1.28783 * 110.14760 * 359.97438 * 27 26 25 29 29 C 1.31886 * 109.31172 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47084 * 174.25373 * 1 2 3 31 31 H 1.08999 * 109.47539 * 294.25850 * 1 2 3 32 32 H 1.09007 * 109.46811 * 54.26010 * 1 2 3 33 33 H 1.08996 * 109.48930 * 58.40012 * 4 2 1 34 34 H 1.09004 * 109.50535 * 298.34823 * 4 2 1 35 35 H 1.08999 * 109.47277 * 47.91042 * 6 5 4 36 36 H 1.08997 * 109.47165 * 167.91609 * 6 5 4 37 37 H 0.96696 * 113.99985 * 299.99992 * 9 7 6 38 38 H 0.96995 * 120.00217 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.49060 * 299.35310 * 18 5 4 40 40 H 1.09006 * 109.48962 * 179.28758 * 18 5 4 41 41 H 1.09000 * 109.48733 * 181.63030 * 19 18 5 42 42 H 1.08994 * 109.50576 * 61.57538 * 19 18 5 43 43 H 1.08005 * 119.28764 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.07018 * 179.69808 * 24 23 22 45 45 H 1.08001 * 126.20479 * 0.27655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 3.5096 -0.7552 1.2265 6 6 4.0410 -1.3751 2.4476 7 6 3.8485 -0.4219 3.6289 8 1 2.7894 -0.1892 3.7391 9 8 4.5789 0.7834 3.3922 10 6 4.3530 -1.0757 4.8894 11 1 4.7697 -2.0714 4.8517 12 6 4.2837 -0.4024 6.0905 13 7 3.7767 0.8103 6.1364 14 14 4.9084 -1.2131 7.6533 15 1 6.3456 -0.8888 7.8386 16 1 4.1335 -0.7100 8.8158 17 1 4.7427 -2.6851 7.5475 18 6 3.9999 -1.4490 0.0274 19 6 3.4893 -0.7263 -1.2215 20 7 2.0204 -0.6938 -1.1991 21 6 1.5192 -0.1093 -2.3505 22 7 1.7606 1.1602 -2.6107 23 6 1.2864 1.7454 -3.7159 24 6 0.5383 1.0641 -4.6060 25 7 0.2599 -0.2597 -4.3909 26 6 -0.4313 -1.2041 -5.0592 27 7 -0.3630 -2.3125 -4.3628 28 7 0.3311 -2.1231 -3.2947 29 6 0.7427 -0.8707 -3.2583 30 1 -0.3633 -1.0224 -0.1029 31 1 -0.3634 0.4222 0.9369 32 1 -0.3633 0.6003 -0.8342 33 1 1.6544 -1.7417 1.2627 34 1 1.7022 -0.1933 2.1395 35 1 3.5103 -2.3070 2.6426 36 1 5.1032 -1.5823 2.3173 37 1 5.5308 0.6516 3.2840 38 1 3.7276 1.2838 6.9814 39 1 3.6360 -2.4764 0.0274 40 1 5.0900 -1.4490 0.0274 41 1 3.8278 -1.2560 -2.1120 42 1 3.8755 0.2928 -1.2357 43 1 1.5038 2.7878 -3.8967 44 1 0.1625 1.5598 -5.4889 45 1 -0.9483 -1.0716 -5.9982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930044182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:06 Heat of formation + Delta-G solvation = 82.747145 kcal Electronic energy + Delta-G solvation = -29065.359083 eV Core-core repulsion = 25119.816426 eV Total energy + Delta-G solvation = -3945.542657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.86858 -41.38928 -39.77296 -38.08345 -36.45231 -34.98711 -34.17296 -33.64044 -32.42424 -31.18167 -30.18523 -28.60010 -27.59949 -25.95282 -25.16487 -24.98252 -23.54752 -23.04882 -22.00875 -20.99937 -19.89068 -19.08677 -18.89577 -17.92641 -17.78280 -16.73846 -16.72409 -16.63482 -16.44877 -16.24370 -15.90526 -15.58221 -15.28826 -15.18632 -14.82213 -14.58276 -14.25746 -14.15049 -13.56420 -13.30044 -13.12931 -12.99124 -12.97496 -12.93645 -12.84802 -12.76084 -12.40195 -12.21310 -12.10110 -11.88465 -11.84702 -11.76600 -11.26480 -10.99950 -10.95040 -10.67036 -10.08648 -9.86499 -9.37580 -9.12358 -8.09959 -6.35570 -0.79895 -0.03268 1.06318 1.42227 1.42672 1.53427 1.61295 2.17437 2.21102 2.40424 2.90096 2.95477 3.16158 3.19847 3.22475 3.68700 3.73633 3.85834 4.01075 4.05717 4.13529 4.20586 4.28854 4.30898 4.42632 4.47923 4.50618 4.53591 4.61813 4.68171 4.70727 4.73667 4.85552 4.85796 4.89865 5.03544 5.07409 5.14689 5.61969 5.64007 5.65992 5.78776 5.89789 6.04993 6.21934 6.25723 6.47715 6.77968 7.32329 7.38587 7.67929 8.94332 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.002584 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.580455 B =10834.140627 C =11035.173251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.107 3.893 3 H 0.056 0.944 4 C 0.070 3.930 5 N -0.536 5.536 6 C 0.050 3.950 7 C 0.241 3.759 8 H 0.019 0.981 9 O -0.569 6.569 10 C -0.587 4.587 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.899 5.899 14 Si 0.959 3.041 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.059 3.941 19 C 0.078 3.922 20 N -0.486 5.486 21 C 0.383 3.617 22 N -0.493 5.493 23 C 0.038 3.962 24 C 0.033 3.967 25 N -0.382 5.382 26 C 0.154 3.846 27 N -0.299 5.299 28 N -0.282 5.282 29 C 0.142 3.858 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.352 0.648 38 H 0.260 0.740 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.221 0.779 44 H 0.240 0.760 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 2.492 -27.211 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.058 4.058 5 N -0.261 5.261 6 C -0.078 4.078 7 C 0.183 3.817 8 H 0.037 0.963 9 O -0.372 6.372 10 C -0.625 4.625 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.536 5.536 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.069 4.069 19 C -0.048 4.048 20 N -0.211 5.211 21 C 0.127 3.873 22 N -0.209 5.209 23 C -0.101 4.101 24 C -0.090 4.090 25 N -0.063 5.063 26 C -0.130 4.130 27 N -0.139 5.139 28 N -0.130 5.130 29 C -0.114 4.114 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.196 0.804 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.237 0.763 44 H 0.256 0.744 45 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -7.483 1.987 -26.289 27.405 hybrid contribution 0.407 0.055 0.331 0.528 sum -7.076 2.042 -25.957 26.982 Atomic orbital electron populations 1.21731 0.93203 1.02149 1.02176 1.21589 0.95459 0.95849 0.87097 0.92622 1.22077 0.88126 0.98835 0.96783 1.62119 1.07788 1.53913 1.02238 1.22698 0.99382 0.95698 0.90024 1.19119 0.91376 0.81936 0.89288 0.96338 1.86510 1.21319 1.34801 1.94612 1.22053 1.43672 1.02427 0.94361 0.92343 1.25877 0.94410 0.95040 1.02289 1.70224 1.44099 1.12658 1.26589 0.85580 0.78476 0.78914 0.78704 1.19730 1.20995 1.19071 1.22208 1.00643 0.95412 0.88640 1.22144 0.83457 1.00746 0.98477 1.59885 1.10673 1.51347 0.99180 1.18962 0.91510 0.86249 0.90585 1.68578 1.21292 1.09657 1.21415 1.22921 0.95815 1.02949 0.88431 1.23585 1.00688 0.79965 1.04770 1.44129 1.34032 1.11413 1.16766 1.27462 1.00105 0.82688 1.02760 1.74454 1.14646 1.23485 1.01273 1.74900 1.12269 1.11788 1.14069 1.22872 1.04361 0.92346 0.91777 0.92157 0.90504 0.93389 0.94722 0.91512 0.95644 0.90714 0.80398 0.93067 0.94487 0.88574 0.89330 0.92723 0.76314 0.74376 0.69948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.88 71.98 0.64 -3.14 16 2 C 0.11 3.38 2.39 44.92 0.11 3.49 16 3 H 0.06 1.93 7.93 -2.38 -0.02 1.91 16 4 C 0.07 2.57 4.72 86.31 0.41 2.97 16 5 N -0.54 -19.91 4.56 -895.72 -4.09 -24.00 16 6 C 0.05 2.08 4.57 86.31 0.39 2.47 16 7 C 0.24 12.49 2.84 29.85 0.08 12.58 16 8 H 0.02 1.10 6.65 -2.39 -0.02 1.08 16 9 O -0.57 -30.31 12.63 -148.98 -1.88 -32.19 16 10 C -0.59 -32.51 8.76 25.60 0.22 -32.29 16 11 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 12 C 0.03 1.48 5.40 84.65 0.46 1.94 16 13 N -0.90 -54.33 12.84 21.45 0.28 -54.05 16 14 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C 0.06 1.79 5.58 86.31 0.48 2.27 16 19 C 0.08 2.17 5.46 86.31 0.47 2.64 16 20 N -0.49 -14.29 4.52 -675.89 -3.06 -17.34 16 21 C 0.38 9.93 3.95 134.03 0.53 10.46 16 22 N -0.49 -10.88 9.76 -193.21 -1.89 -12.77 16 23 C 0.04 0.44 11.06 83.60 0.92 1.36 16 24 C 0.03 0.24 11.06 83.09 0.92 1.15 16 25 N -0.38 -5.92 2.95 -356.36 -1.05 -6.98 16 26 C 0.15 2.09 12.97 180.18 2.34 4.43 16 27 N -0.30 -7.42 12.21 -60.13 -0.73 -8.16 16 28 N -0.28 -8.52 12.30 -54.99 -0.68 -9.19 16 29 C 0.14 3.58 7.90 134.37 1.06 4.64 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.27 7.37 -2.38 -0.02 1.25 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.07 2.75 6.57 -2.38 -0.02 2.73 16 35 H 0.03 1.07 8.05 -2.39 -0.02 1.06 16 36 H 0.07 2.93 7.91 -2.39 -0.02 2.91 16 37 H 0.35 16.66 9.04 -74.06 -0.67 15.99 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 2.60 8.02 -2.38 -0.02 2.58 16 41 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 42 H 0.05 1.60 8.02 -2.39 -0.02 1.58 16 43 H 0.22 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.24 -1.20 8.06 -2.91 -0.02 -1.22 16 45 H 0.29 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -80.42 368.66 -1.69 -82.11 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.35 Total: 21.80 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 9.04 Total: 14.97 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -11.22 Total: -132.49 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.88 Total: -32.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.42 -1.69 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930044182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.857 kcal (2) G-P(sol) polarization free energy of solvation -80.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds