Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.48870 * 2 1 4 4 C 1.53054 * 109.48721 * 239.95910 * 2 1 3 5 5 N 1.46958 * 109.36517 * 181.62668 * 4 2 1 6 6 C 1.46895 * 111.00253 * 183.18950 * 5 4 2 7 7 C 1.53001 * 109.47175 * 170.00527 * 6 5 4 8 8 H 1.08997 * 109.47391 * 59.99754 * 7 6 5 9 9 O 1.42902 * 109.46994 * 299.99657 * 7 6 5 10 10 C 1.50701 * 109.46914 * 180.02562 * 7 6 5 11 11 H 1.07995 * 120.00089 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99715 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00001 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99849 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.47015 * 60.00111 * 14 12 10 16 16 H 1.48497 * 109.47024 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47388 * 300.00071 * 14 12 10 18 18 C 1.46955 * 110.87890 * 59.32164 * 5 4 2 19 19 C 1.53059 * 109.36609 * 300.68182 * 18 5 4 20 20 N 1.46953 * 109.36506 * 58.39743 * 19 18 5 21 21 C 1.38505 * 111.00169 * 176.81582 * 20 19 18 22 22 N 1.31819 * 120.27953 * 64.11074 * 21 20 19 23 23 C 1.33752 * 121.29917 * 180.02562 * 22 21 20 24 24 C 1.34760 * 121.43291 * 0.02562 * 23 22 21 25 25 N 1.36981 * 119.84232 * 359.97438 * 24 23 22 26 26 C 1.34778 * 134.71235 * 179.97438 * 25 24 23 27 27 N 1.31074 * 107.59995 * 180.02562 * 26 25 24 28 28 N 1.28793 * 110.14522 * 0.02562 * 27 26 25 29 29 C 1.31893 * 109.30957 * 359.72457 * 28 27 26 30 30 H 1.09001 * 109.46948 * 185.79620 * 1 2 3 31 31 H 1.09007 * 109.47316 * 305.79044 * 1 2 3 32 32 H 1.08997 * 109.47741 * 65.79433 * 1 2 3 33 33 H 1.09004 * 109.48501 * 61.66255 * 4 2 1 34 34 H 1.08996 * 109.48862 * 301.59682 * 4 2 1 35 35 H 1.08997 * 109.47162 * 50.00141 * 6 5 4 36 36 H 1.08997 * 109.46968 * 290.00369 * 6 5 4 37 37 H 0.96710 * 114.00024 * 300.00430 * 9 7 6 38 38 H 0.96999 * 119.99937 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.48971 * 60.64597 * 18 5 4 40 40 H 1.08999 * 109.49079 * 180.71353 * 18 5 4 41 41 H 1.09008 * 109.48500 * 298.43555 * 19 18 5 42 42 H 1.08999 * 109.50770 * 178.38016 * 19 18 5 43 43 H 1.07997 * 119.28386 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.07760 * 180.02562 * 24 23 22 45 45 H 1.07999 * 126.20121 * 0.03317 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 3.5096 -0.7549 -1.2268 6 6 4.0410 -1.3745 -2.4481 7 6 5.5560 -1.1690 -2.5065 8 1 6.0192 -1.6299 -1.6342 9 8 5.8468 0.2301 -2.5169 10 6 6.1011 -1.8041 -3.7598 11 1 5.4337 -2.3046 -4.4457 12 6 7.4517 -1.7461 -4.0307 13 7 8.2643 -1.1362 -3.1956 14 14 8.1275 -2.5339 -5.5838 15 1 7.4960 -1.9063 -6.7723 16 1 9.5977 -2.3333 -5.6412 17 1 7.8259 -3.9880 -5.5729 18 6 3.9999 -1.4490 -0.0279 19 6 3.4893 -0.7267 1.2212 20 7 2.0203 -0.6941 1.1989 21 6 1.5192 -0.1099 2.3504 22 7 1.7692 1.1569 2.6160 23 6 1.2961 1.7414 3.7221 24 6 0.5454 1.0608 4.6105 25 7 0.2533 -0.2586 4.3868 26 6 -0.4465 -1.2005 5.0498 27 7 -0.3845 -2.3067 4.3495 28 7 0.3137 -2.1184 3.2838 29 6 0.7300 -0.8674 3.2505 30 1 -0.3633 -1.0224 0.1038 31 1 -0.3634 0.6010 0.8336 32 1 -0.3634 0.4213 -0.9372 33 1 1.7020 -0.1924 -2.1394 34 1 1.6543 -1.7415 -1.2631 35 1 3.5778 -0.9135 -3.3205 36 1 3.8192 -2.4416 -2.4402 37 1 5.4651 0.7057 -3.2675 38 1 9.2145 -1.0957 -3.3860 39 1 3.6360 -2.4764 -0.0281 40 1 5.0899 -1.4490 -0.0279 41 1 3.8755 0.2925 1.2353 42 1 3.8278 -1.2562 2.1118 43 1 1.5206 2.7815 3.9072 44 1 0.1743 1.5547 5.4962 45 1 -0.9646 -1.0678 5.9881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930044183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = 109.482782 kcal Electronic energy + Delta-G solvation = -29036.861489 eV Core-core repulsion = 25092.478176 eV Total energy + Delta-G solvation = -3944.383313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.10764 -40.39021 -38.77075 -36.60758 -35.03042 -33.86091 -32.53111 -32.03466 -31.51154 -30.23949 -28.67286 -27.56634 -25.94659 -24.67204 -24.43450 -23.41351 -22.71080 -22.19801 -20.18134 -19.71267 -19.15176 -18.09826 -17.14289 -17.05224 -16.73454 -16.10805 -15.50197 -15.16314 -14.99840 -14.69113 -14.59839 -14.36593 -14.02988 -13.82674 -13.61579 -13.42242 -13.00930 -12.61747 -12.35771 -12.17865 -12.13562 -12.00919 -11.63667 -11.17446 -11.09347 -11.05287 -10.97309 -10.87087 -10.85870 -10.68360 -10.44440 -10.35615 -10.18085 -9.98725 -8.96276 -8.80787 -8.69746 -8.52646 -8.06181 -7.62472 -5.96957 -4.15078 -0.07221 0.68129 1.73194 2.33880 2.92843 3.08387 3.31484 3.36765 3.38501 3.63301 3.79210 4.03380 4.13620 4.29768 4.48486 4.58674 4.66342 4.89627 5.05713 5.08560 5.22586 5.30798 5.39475 5.42634 5.43936 5.58141 5.62142 5.63382 5.71793 5.83006 5.97622 6.11451 6.16742 6.22127 6.25653 6.34425 6.38182 6.60120 6.77834 6.84500 6.92710 7.19517 7.53502 7.62788 7.81140 7.91349 8.11041 8.24179 8.88624 9.50245 9.66592 11.07080 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.002569 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.050779 B =10898.400131 C =11007.626521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 H 0.071 0.929 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.032 3.968 7 C 0.238 3.762 8 H 0.054 0.946 9 O -0.554 6.554 10 C -0.574 4.574 11 H 0.054 0.946 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.889 3.111 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.060 3.940 19 C 0.069 3.931 20 N -0.480 5.480 21 C 0.422 3.578 22 N -0.487 5.487 23 C 0.066 3.934 24 C -0.006 4.006 25 N -0.377 5.377 26 C 0.128 3.872 27 N -0.255 5.255 28 N -0.228 5.228 29 C 0.151 3.849 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.342 0.658 38 H 0.260 0.740 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.184 0.816 44 H 0.180 0.820 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 6.763 16.918 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 H 0.089 0.911 4 C -0.067 4.067 5 N -0.252 5.252 6 C -0.095 4.095 7 C 0.179 3.821 8 H 0.072 0.928 9 O -0.356 6.356 10 C -0.613 4.613 11 H 0.072 0.928 12 C -0.126 4.126 13 N -0.494 5.494 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.069 4.069 19 C -0.057 4.057 20 N -0.205 5.205 21 C 0.165 3.835 22 N -0.203 5.203 23 C -0.074 4.074 24 C -0.129 4.129 25 N -0.059 5.059 26 C -0.155 4.155 27 N -0.097 5.097 28 N -0.077 5.077 29 C -0.103 4.103 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.185 0.815 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.201 0.799 44 H 0.197 0.803 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.442 5.769 16.749 24.860 hybrid contribution -0.339 0.466 -0.170 0.601 sum -17.781 6.235 16.579 25.098 Atomic orbital electron populations 1.21860 0.94373 1.02620 1.01613 1.21817 0.94555 0.97171 0.87684 0.91059 1.22181 0.89488 0.99139 0.95900 1.62193 1.05835 1.54272 1.02859 1.23078 1.00852 0.95875 0.89740 1.19308 0.85603 0.80521 0.96618 0.92812 1.86558 1.78322 1.21761 1.48915 1.21623 0.93129 1.38413 1.08112 0.92795 1.25012 0.97044 0.94235 0.96306 1.70067 1.03637 1.40237 1.35489 0.86748 0.77870 0.79921 0.83873 1.20173 1.21244 1.20216 1.22158 1.01316 0.95085 0.88333 1.22301 0.82441 1.01682 0.99233 1.60061 1.11191 1.50629 0.98619 1.19270 0.88448 0.85445 0.90331 1.68693 1.21751 1.10286 1.19585 1.22236 0.94793 1.01231 0.89120 1.22606 1.04164 0.81918 1.04248 1.43821 1.34103 1.10417 1.17595 1.26445 1.02129 0.84429 1.02545 1.74585 1.13494 1.20865 1.00761 1.75007 1.10056 1.10029 1.12621 1.22968 1.04227 0.92519 0.90555 0.91364 0.93931 0.91127 0.90139 0.94250 0.91752 0.95302 0.81473 0.92982 0.94248 0.88542 0.91677 0.90596 0.79900 0.80287 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.88 37.15 0.33 -1.39 16 2 C 0.09 1.30 2.39 -67.66 -0.16 1.14 16 3 H 0.07 1.06 7.94 -51.93 -0.41 0.64 16 4 C 0.06 0.93 4.89 -3.76 -0.02 0.91 16 5 N -0.53 -9.46 4.58 -234.47 -1.07 -10.53 16 6 C 0.03 0.65 4.56 -3.83 -0.02 0.63 16 7 C 0.24 5.92 2.71 -27.88 -0.08 5.84 16 8 H 0.05 1.47 6.49 -51.93 -0.34 1.13 16 9 O -0.55 -14.25 12.59 -35.23 -0.44 -14.70 16 10 C -0.57 -15.64 8.76 -34.44 -0.30 -15.94 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 12 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 13 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 14 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.06 1.03 5.41 -3.76 -0.02 1.01 16 19 C 0.07 1.05 5.46 -3.76 -0.02 1.03 16 20 N -0.48 -6.90 4.52 -164.97 -0.75 -7.65 16 21 C 0.42 5.55 3.95 -155.02 -0.61 4.93 16 22 N -0.49 -5.68 9.76 -12.42 -0.12 -5.80 16 23 C 0.07 0.49 11.06 -17.95 -0.20 0.30 16 24 C -0.01 -0.04 11.06 -16.48 -0.18 -0.22 16 25 N -0.38 -3.57 2.95 -63.99 -0.19 -3.76 16 26 C 0.13 1.10 12.97 -90.14 -1.17 -0.07 16 27 N -0.26 -3.31 12.21 29.64 0.36 -2.95 16 28 N -0.23 -3.43 12.30 31.27 0.38 -3.05 16 29 C 0.15 1.98 7.90 -155.98 -1.23 0.75 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.50 7.37 -51.92 -0.38 0.12 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 36 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.34 7.95 9.04 45.56 0.41 8.36 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.85 6.34 -51.93 -0.33 1.52 16 41 H 0.06 1.05 8.01 -51.92 -0.42 0.63 16 42 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 43 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 45 H 0.23 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -34.48 368.34 -10.01 -44.49 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.65 Total: 5.79 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.78 Total: 1.06 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.67 Total: -58.34 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.44 Total: -14.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.48 -10.01 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930044183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.971 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds