Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.48870 * 2 1 4 4 C 1.53054 * 109.48721 * 239.95910 * 2 1 3 5 5 N 1.46958 * 109.36517 * 181.62668 * 4 2 1 6 6 C 1.46895 * 111.00253 * 183.18950 * 5 4 2 7 7 C 1.53001 * 109.47175 * 170.00527 * 6 5 4 8 8 H 1.08997 * 109.47391 * 59.99754 * 7 6 5 9 9 O 1.42902 * 109.46994 * 299.99657 * 7 6 5 10 10 C 1.50701 * 109.46914 * 180.02562 * 7 6 5 11 11 H 1.07995 * 120.00089 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99715 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00001 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99849 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.47015 * 60.00111 * 14 12 10 16 16 H 1.48497 * 109.47024 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47388 * 300.00071 * 14 12 10 18 18 C 1.46955 * 110.87890 * 59.32164 * 5 4 2 19 19 C 1.53059 * 109.36609 * 300.68182 * 18 5 4 20 20 N 1.46953 * 109.36506 * 58.39743 * 19 18 5 21 21 C 1.38505 * 111.00169 * 176.81582 * 20 19 18 22 22 N 1.31819 * 120.27953 * 64.11074 * 21 20 19 23 23 C 1.33752 * 121.29917 * 180.02562 * 22 21 20 24 24 C 1.34760 * 121.43291 * 0.02562 * 23 22 21 25 25 N 1.36981 * 119.84232 * 359.97438 * 24 23 22 26 26 C 1.34778 * 134.71235 * 179.97438 * 25 24 23 27 27 N 1.31074 * 107.59995 * 180.02562 * 26 25 24 28 28 N 1.28793 * 110.14522 * 0.02562 * 27 26 25 29 29 C 1.31893 * 109.30957 * 359.72457 * 28 27 26 30 30 H 1.09001 * 109.46948 * 185.79620 * 1 2 3 31 31 H 1.09007 * 109.47316 * 305.79044 * 1 2 3 32 32 H 1.08997 * 109.47741 * 65.79433 * 1 2 3 33 33 H 1.09004 * 109.48501 * 61.66255 * 4 2 1 34 34 H 1.08996 * 109.48862 * 301.59682 * 4 2 1 35 35 H 1.08997 * 109.47162 * 50.00141 * 6 5 4 36 36 H 1.08997 * 109.46968 * 290.00369 * 6 5 4 37 37 H 0.96710 * 114.00024 * 300.00430 * 9 7 6 38 38 H 0.96999 * 119.99937 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.48971 * 60.64597 * 18 5 4 40 40 H 1.08999 * 109.49079 * 180.71353 * 18 5 4 41 41 H 1.09008 * 109.48500 * 298.43555 * 19 18 5 42 42 H 1.08999 * 109.50770 * 178.38016 * 19 18 5 43 43 H 1.07997 * 119.28386 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.07760 * 180.02562 * 24 23 22 45 45 H 1.07999 * 126.20121 * 0.03317 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 3.5096 -0.7549 -1.2268 6 6 4.0410 -1.3745 -2.4481 7 6 5.5560 -1.1690 -2.5065 8 1 6.0192 -1.6299 -1.6342 9 8 5.8468 0.2301 -2.5169 10 6 6.1011 -1.8041 -3.7598 11 1 5.4337 -2.3046 -4.4457 12 6 7.4517 -1.7461 -4.0307 13 7 8.2643 -1.1362 -3.1956 14 14 8.1275 -2.5339 -5.5838 15 1 7.4960 -1.9063 -6.7723 16 1 9.5977 -2.3333 -5.6412 17 1 7.8259 -3.9880 -5.5729 18 6 3.9999 -1.4490 -0.0279 19 6 3.4893 -0.7267 1.2212 20 7 2.0203 -0.6941 1.1989 21 6 1.5192 -0.1099 2.3504 22 7 1.7692 1.1569 2.6160 23 6 1.2961 1.7414 3.7221 24 6 0.5454 1.0608 4.6105 25 7 0.2533 -0.2586 4.3868 26 6 -0.4465 -1.2005 5.0498 27 7 -0.3845 -2.3067 4.3495 28 7 0.3137 -2.1184 3.2838 29 6 0.7300 -0.8674 3.2505 30 1 -0.3633 -1.0224 0.1038 31 1 -0.3634 0.6010 0.8336 32 1 -0.3634 0.4213 -0.9372 33 1 1.7020 -0.1924 -2.1394 34 1 1.6543 -1.7415 -1.2631 35 1 3.5778 -0.9135 -3.3205 36 1 3.8192 -2.4416 -2.4402 37 1 5.4651 0.7057 -3.2675 38 1 9.2145 -1.0957 -3.3860 39 1 3.6360 -2.4764 -0.0281 40 1 5.0899 -1.4490 -0.0279 41 1 3.8755 0.2925 1.2353 42 1 3.8278 -1.2562 2.1118 43 1 1.5206 2.7815 3.9072 44 1 0.1743 1.5547 5.4962 45 1 -0.9646 -1.0678 5.9881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930044183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = 83.158318 kcal Electronic energy + Delta-G solvation = -29038.003003 eV Core-core repulsion = 25092.478176 eV Total energy + Delta-G solvation = -3945.524827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.87059 -41.38913 -39.77943 -38.11071 -36.43812 -34.97488 -34.17289 -33.63427 -32.41535 -31.14933 -30.20326 -28.81593 -27.42584 -25.89296 -25.15059 -24.72589 -23.88421 -23.27219 -21.74055 -20.98928 -19.89412 -19.10945 -18.89712 -17.92582 -17.78531 -16.74132 -16.72175 -16.62790 -16.38099 -16.21004 -15.93230 -15.61690 -15.42635 -15.16572 -14.74719 -14.50055 -14.44522 -14.19062 -13.52085 -13.18907 -13.06446 -13.00018 -12.95918 -12.90027 -12.87243 -12.72578 -12.45119 -12.20128 -12.10499 -11.93972 -11.85409 -11.77286 -11.27344 -11.00790 -10.92634 -10.65427 -10.07255 -9.86363 -9.37977 -9.14451 -8.10156 -6.35741 -0.80286 -0.03601 1.06033 1.42383 1.43997 1.51957 1.60938 2.17153 2.20936 2.40432 2.89818 2.95372 3.16039 3.19674 3.22269 3.69087 3.73876 3.86113 4.02000 4.05062 4.13505 4.21275 4.27813 4.30552 4.41718 4.49616 4.50809 4.58113 4.61351 4.69241 4.69860 4.72213 4.86199 4.87768 4.90206 5.03450 5.07725 5.18062 5.62316 5.63738 5.65606 5.78807 5.89495 6.04909 6.21206 6.25110 6.47204 6.77362 7.31962 7.38295 7.67279 8.93987 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.002569 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.050779 B =10898.400131 C =11007.626521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.101 3.899 3 H 0.060 0.940 4 C 0.064 3.936 5 N -0.534 5.534 6 C 0.050 3.950 7 C 0.239 3.761 8 H 0.020 0.980 9 O -0.569 6.569 10 C -0.588 4.588 11 H 0.059 0.941 12 C 0.026 3.974 13 N -0.899 5.899 14 Si 0.959 3.041 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.065 3.935 19 C 0.084 3.916 20 N -0.487 5.487 21 C 0.383 3.617 22 N -0.493 5.493 23 C 0.038 3.962 24 C 0.033 3.967 25 N -0.382 5.382 26 C 0.153 3.847 27 N -0.299 5.299 28 N -0.283 5.283 29 C 0.142 3.858 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.221 0.779 44 H 0.240 0.760 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 8.366 18.381 28.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.006 4.006 3 H 0.078 0.922 4 C -0.064 4.064 5 N -0.258 5.258 6 C -0.078 4.078 7 C 0.181 3.819 8 H 0.038 0.962 9 O -0.372 6.372 10 C -0.626 4.626 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.536 5.536 14 Si 0.783 3.217 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.195 1.195 18 C -0.064 4.064 19 C -0.043 4.043 20 N -0.211 5.211 21 C 0.127 3.873 22 N -0.209 5.209 23 C -0.101 4.101 24 C -0.090 4.090 25 N -0.064 5.064 26 C -0.130 4.130 27 N -0.139 5.139 28 N -0.131 5.131 29 C -0.114 4.114 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.197 0.803 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.237 0.763 44 H 0.256 0.744 45 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -19.675 7.344 18.205 27.793 hybrid contribution 0.266 0.118 -0.401 0.496 sum -19.409 7.462 17.803 27.374 Atomic orbital electron populations 1.21732 0.92614 1.02076 1.02608 1.21724 0.95754 0.96056 0.87043 0.92189 1.22253 0.87228 0.99403 0.97561 1.62121 1.07912 1.53860 1.01933 1.22689 0.97841 0.95870 0.91407 1.19144 0.88322 0.79857 0.94563 0.96187 1.86505 1.78953 1.22180 1.49545 1.22031 0.93604 1.38218 1.08790 0.92299 1.25878 0.97441 0.94720 0.99576 1.70214 1.03848 1.41936 1.37571 0.85633 0.77032 0.79089 0.79919 1.19088 1.21090 1.19534 1.22026 0.99709 0.95231 0.89436 1.22021 0.83932 1.00407 0.97891 1.59888 1.09919 1.51616 0.99715 1.18962 0.91308 0.86302 0.90773 1.68578 1.21256 1.09655 1.21375 1.22929 0.95762 1.02958 0.88468 1.23591 1.00649 0.80052 1.04719 1.44135 1.33914 1.11672 1.16630 1.27465 0.99982 0.82794 1.02780 1.74454 1.14693 1.23417 1.01305 1.74907 1.12204 1.11663 1.14332 1.22882 1.04372 0.92379 0.91733 0.92461 0.93811 0.89239 0.88662 0.94639 0.90663 0.95778 0.80349 0.93060 0.94793 0.91308 0.92929 0.90288 0.76253 0.74358 0.69928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.88 71.98 0.64 -2.39 16 2 C 0.10 2.80 2.39 44.92 0.11 2.91 16 3 H 0.06 1.79 7.94 -2.38 -0.02 1.77 16 4 C 0.06 1.93 4.89 86.31 0.42 2.36 16 5 N -0.53 -19.84 4.58 -895.72 -4.10 -23.94 16 6 C 0.05 2.08 4.56 86.30 0.39 2.47 16 7 C 0.24 12.38 2.71 29.85 0.08 12.47 16 8 H 0.02 1.18 6.49 -2.39 -0.02 1.16 16 9 O -0.57 -30.21 12.59 -148.98 -1.88 -32.09 16 10 C -0.59 -32.59 8.76 25.60 0.22 -32.36 16 11 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 12 C 0.03 1.49 5.40 84.66 0.46 1.94 16 13 N -0.90 -54.38 12.84 21.45 0.28 -54.10 16 14 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C 0.06 2.39 5.41 86.31 0.47 2.86 16 19 C 0.08 2.71 5.46 86.31 0.47 3.18 16 20 N -0.49 -14.45 4.52 -675.85 -3.06 -17.51 16 21 C 0.38 10.02 3.95 134.03 0.53 10.55 16 22 N -0.49 -10.88 9.76 -193.22 -1.89 -12.76 16 23 C 0.04 0.44 11.06 83.60 0.92 1.36 16 24 C 0.03 0.24 11.06 83.09 0.92 1.16 16 25 N -0.38 -6.02 2.95 -356.36 -1.05 -7.07 16 26 C 0.15 2.13 12.97 180.18 2.34 4.47 16 27 N -0.30 -7.53 12.21 -60.12 -0.73 -8.27 16 28 N -0.28 -8.67 12.30 -54.99 -0.68 -9.34 16 29 C 0.14 3.63 7.90 134.37 1.06 4.69 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 0.99 7.37 -2.38 -0.02 0.97 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 36 H 0.02 1.02 8.12 -2.39 -0.02 1.00 16 37 H 0.35 16.70 9.04 -74.05 -0.67 16.03 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 2.89 6.34 -2.39 -0.02 2.88 16 41 H 0.05 1.79 8.01 -2.38 -0.02 1.77 16 42 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16 43 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.24 -1.18 8.06 -2.91 -0.02 -1.20 16 45 H 0.29 0.16 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -80.44 368.34 -1.70 -82.14 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.35 Total: 21.48 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 9.03 Total: 15.65 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -11.23 Total: -132.99 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.88 Total: -32.09 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.44 -1.70 -82.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930044183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.295 kcal (2) G-P(sol) polarization free energy of solvation -80.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds