Wall clock time and date at job start Tue Mar 31 2020 17:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47094 * 269.99761 * 3 2 1 5 5 H 1.48509 * 109.47242 * 29.99841 * 3 2 1 6 6 H 1.48503 * 109.47533 * 149.99886 * 3 2 1 7 7 C 1.38808 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00571 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49248 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11697 * 155.35857 * 10 9 7 12 12 N 1.46904 * 113.73994 * 137.95433 * 11 10 9 13 13 C 1.46891 * 110.99987 * 301.22725 * 12 11 10 14 14 C 1.53241 * 109.34199 * 172.74806 * 13 12 11 15 15 N 1.47079 * 108.52206 * 53.82607 * 14 13 12 16 16 C 1.34779 * 120.88168 * 128.79611 * 15 14 13 17 17 O 1.21568 * 120.00097 * 175.01251 * 16 15 14 18 18 C 1.47733 * 119.99799 * 355.00909 * 16 15 14 19 19 N 1.33025 * 120.15509 * 76.11263 * 18 16 15 20 20 C 1.31732 * 120.00303 * 180.02562 * 19 18 16 21 21 C 1.38800 * 120.34546 * 359.97438 * 20 19 18 22 22 N 1.32031 * 120.32548 * 359.97438 * 21 20 19 23 23 C 1.32834 * 119.98310 * 359.75044 * 22 21 20 24 24 N 1.38268 * 120.16933 * 180.25571 * 23 22 21 25 25 C 1.47080 * 118.23855 * 308.81846 * 15 14 13 26 26 C 1.46900 * 110.99915 * 176.92041 * 12 11 10 27 27 C 1.47810 * 134.45944 * 359.86727 * 9 7 2 28 28 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.76964 * 41.05720 * 10 9 7 30 30 H 1.08998 * 113.87219 * 269.67465 * 10 9 7 31 31 H 1.09001 * 113.74095 * 269.15279 * 11 10 9 32 32 H 1.09004 * 109.49233 * 292.70391 * 13 12 11 33 33 H 1.09002 * 109.49401 * 52.78671 * 13 12 11 34 34 H 1.09005 * 109.62499 * 294.11963 * 14 13 12 35 35 H 1.09000 * 109.63284 * 173.54294 * 14 13 12 36 36 H 1.07998 * 119.82509 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.83897 * 180.02562 * 21 20 19 38 38 H 0.97006 * 120.00128 * 185.32799 * 24 23 22 39 39 H 0.97003 * 119.99925 * 5.32572 * 24 23 22 40 40 H 1.08997 * 109.63192 * 291.47433 * 25 15 14 41 41 H 1.09001 * 109.62990 * 170.88895 * 25 15 14 42 42 H 1.08996 * 109.49825 * 307.21442 * 26 12 11 43 43 H 1.09007 * 109.48789 * 67.29739 * 26 12 11 44 44 H 1.08999 * 113.77476 * 90.37981 * 27 9 7 45 45 H 1.09003 * 113.83396 * 318.91410 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3471 -4.0828 0.6409 12 7 -0.3351 -5.2645 0.0965 13 6 -0.5448 -5.1309 -1.3512 14 6 -1.0906 -6.4498 -1.9088 15 7 -2.2869 -6.8232 -1.1389 16 6 -3.4404 -7.1363 -1.7617 17 8 -4.3923 -7.5299 -1.1161 18 6 -3.5480 -7.0012 -3.2289 19 7 -2.9834 -7.9041 -4.0262 20 6 -3.0808 -7.7804 -5.3341 21 6 -3.7712 -6.7112 -5.8879 22 7 -4.3375 -5.8080 -5.1090 23 6 -4.2521 -5.9229 -3.7884 24 7 -4.8482 -4.9822 -2.9690 25 6 -2.1912 -6.8452 0.3286 26 6 -1.6021 -5.5107 0.7981 27 6 -0.1057 -2.7570 0.0025 28 1 -0.4850 0.8401 -0.0004 29 1 2.5625 -4.0323 0.6558 30 1 1.8326 -4.2366 -0.9962 31 1 0.3595 -4.0638 1.7307 32 1 -1.2604 -4.3313 -1.5428 33 1 0.4028 -4.8956 -1.8358 34 1 -0.3346 -7.2291 -1.8115 35 1 -1.3556 -6.3220 -2.9583 36 1 -2.6217 -8.5153 -5.9788 37 1 -3.8463 -6.6181 -6.9613 38 1 -4.7198 -5.0246 -2.0084 39 1 -5.3947 -4.2797 -3.3548 40 1 -1.5411 -7.6624 0.6409 41 1 -3.1840 -6.9786 0.7583 42 1 -1.4213 -5.5508 1.8722 43 1 -2.3029 -4.7057 0.5765 44 1 -0.5312 -2.8722 -0.9944 45 1 -0.7188 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941351091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:58 Heat of formation + Delta-G solvation = 104.595539 kcal Electronic energy + Delta-G solvation = -29175.478775 eV Core-core repulsion = 25230.883536 eV Total energy + Delta-G solvation = -3944.595239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.55039 -40.02584 -38.82540 -36.69263 -35.79349 -34.18050 -33.66398 -31.95175 -31.22151 -30.05711 -28.18071 -26.63882 -25.39502 -24.89248 -23.97763 -23.71792 -22.72654 -21.57283 -19.79191 -18.75530 -18.65758 -17.88914 -17.51873 -16.93141 -16.61245 -15.83357 -15.60470 -15.28866 -15.15551 -14.96306 -14.90317 -14.77784 -14.38007 -14.17580 -13.80098 -13.46638 -13.00285 -12.48407 -12.30672 -12.20765 -12.01902 -11.84991 -11.84478 -11.64372 -11.26241 -11.05419 -10.92366 -10.91099 -10.75904 -10.60750 -10.41442 -10.21323 -9.94765 -9.55297 -9.34622 -8.89216 -8.79223 -8.37803 -7.89425 -6.90930 -5.82009 -3.14538 0.48401 1.01150 2.22449 2.66815 3.00946 3.35141 3.40202 3.42142 3.44316 3.88876 4.04993 4.06968 4.32158 4.44722 4.73073 4.86883 4.89387 4.97418 5.01714 5.12287 5.22012 5.27681 5.34799 5.44726 5.47030 5.62010 5.69030 5.79955 5.89506 5.92143 6.02859 6.09611 6.26344 6.31689 6.50388 6.55334 6.58259 6.90518 6.92003 7.13480 7.14979 7.24059 7.31189 7.46570 7.55795 7.63813 7.86054 7.92553 8.98972 9.65732 10.53953 11.34738 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.003151 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.351970 B = 8885.057341 C = 9721.288388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.126 3.874 11 C 0.035 3.965 12 N -0.528 5.528 13 C 0.037 3.963 14 C 0.118 3.882 15 N -0.593 5.593 16 C 0.584 3.416 17 O -0.532 6.532 18 C -0.026 4.026 19 N -0.372 5.372 20 C -0.020 4.020 21 C 0.124 3.876 22 N -0.501 5.501 23 C 0.397 3.603 24 N -0.824 5.824 25 C 0.117 3.883 26 C 0.042 3.958 27 C 0.133 3.867 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.415 0.585 39 H 0.412 0.588 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -15.462 -7.550 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.074 4.074 12 N -0.252 5.252 13 C -0.092 4.092 14 C -0.005 4.005 15 N -0.326 5.326 16 C 0.369 3.631 17 O -0.407 6.407 18 C -0.176 4.176 19 N -0.088 5.088 20 C -0.184 4.184 21 C -0.039 4.039 22 N -0.224 5.224 23 C 0.155 3.845 24 N -0.366 5.366 25 C -0.005 4.005 26 C -0.087 4.087 27 C 0.006 3.994 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.191 0.809 37 H 0.192 0.808 38 H 0.246 0.754 39 H 0.242 0.758 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.749 -15.709 -7.031 18.875 hybrid contribution -0.128 2.001 -0.309 2.029 sum -7.878 -13.708 -7.341 17.431 Atomic orbital electron populations 1.69822 1.05065 1.25294 1.56769 1.24776 0.95660 0.97547 1.02420 0.86125 0.78683 0.83399 0.77598 1.21618 1.21623 1.20535 1.19018 0.90282 0.81881 1.43766 0.90160 1.45812 1.02192 0.99439 1.86083 1.22653 0.94591 0.85739 0.97049 1.24310 0.96123 0.87599 0.99355 1.62016 1.20837 1.39760 1.02588 1.22591 1.01660 0.95235 0.89680 1.21905 0.86354 0.97462 0.94749 1.48127 1.10466 1.66293 1.07690 1.17617 0.82701 0.77379 0.85357 1.90814 1.37898 1.45870 1.66146 1.21111 1.05523 0.95742 0.95225 1.68240 1.12435 1.22870 1.05231 1.23449 1.03075 1.00595 0.91319 1.23771 0.90094 0.89112 1.00953 1.68124 1.23185 1.28947 1.02142 1.18954 0.88954 0.87603 0.88978 1.42140 1.54502 1.30925 1.09006 1.21856 1.02300 0.98182 0.78208 1.22431 0.91044 0.95828 0.99402 1.22937 0.88676 0.90513 0.97294 0.93715 0.93586 0.94616 0.88152 0.93573 0.88846 0.89993 0.90456 0.80933 0.80806 0.75378 0.75756 0.90260 0.88742 0.89303 0.94185 0.95344 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 11.39 55.49 0.63 -26.39 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.24 3.70 -177.87 -0.66 -15.90 16 10 C 0.13 2.50 8.42 -2.97 -0.02 2.47 16 11 C 0.03 0.62 4.03 -69.91 -0.28 0.34 16 12 N -0.53 -7.67 4.76 -228.23 -1.09 -8.76 16 13 C 0.04 0.53 4.47 -3.70 -0.02 0.51 16 14 C 0.12 1.45 6.51 -3.60 -0.02 1.43 16 15 N -0.59 -7.55 3.01 -173.61 -0.52 -8.07 16 16 C 0.58 8.20 6.09 -12.38 -0.08 8.13 16 17 O -0.53 -8.70 16.58 5.31 0.09 -8.61 16 18 C -0.03 -0.34 4.68 -82.65 -0.39 -0.72 16 19 N -0.37 -4.51 10.09 -9.49 -0.10 -4.61 16 20 C -0.02 -0.18 11.21 -17.39 -0.19 -0.37 16 21 C 0.12 1.05 11.22 -17.26 -0.19 0.86 16 22 N -0.50 -5.68 10.52 -12.00 -0.13 -5.80 16 23 C 0.40 4.86 7.77 -154.88 -1.20 3.66 16 24 N -0.82 -8.67 8.97 31.31 0.28 -8.39 16 25 C 0.12 1.37 6.58 -3.60 -0.02 1.35 16 26 C 0.04 0.53 5.61 -3.70 -0.02 0.51 16 27 C 0.13 2.99 6.81 -2.83 -0.02 2.97 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.69 6.22 -51.93 -0.32 0.36 16 31 H 0.10 1.79 8.04 -51.93 -0.42 1.37 16 32 H 0.05 0.74 6.45 -51.93 -0.33 0.41 16 33 H 0.09 1.41 6.06 -51.93 -0.31 1.10 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.95 6.13 -51.93 -0.32 0.63 16 36 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.41 4.39 7.67 -40.82 -0.31 4.08 16 39 H 0.41 3.58 8.95 -40.82 -0.37 3.21 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 42 H 0.09 1.02 8.04 -51.93 -0.42 0.61 16 43 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.03 0.66 5.64 -51.93 -0.29 0.37 16 45 H 0.07 1.76 7.16 -51.93 -0.37 1.39 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -34.00 361.81 -9.70 -43.70 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.92 Total: 5.96 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -2.72 Total: 14.51 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.58 Total: -77.92 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.00 -9.70 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941351091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.298 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds