Wall clock time and date at job start Tue Mar 31 2020 17:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47094 * 269.99761 * 3 2 1 5 5 H 1.48509 * 109.47242 * 29.99841 * 3 2 1 6 6 H 1.48503 * 109.47533 * 149.99886 * 3 2 1 7 7 C 1.38808 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00571 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49248 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11697 * 155.35857 * 10 9 7 12 12 N 1.46904 * 113.73994 * 137.95433 * 11 10 9 13 13 C 1.46891 * 110.99987 * 301.22725 * 12 11 10 14 14 C 1.53241 * 109.34199 * 172.74806 * 13 12 11 15 15 N 1.47079 * 108.52206 * 53.82607 * 14 13 12 16 16 C 1.34779 * 120.88168 * 128.79611 * 15 14 13 17 17 O 1.21568 * 120.00097 * 175.01251 * 16 15 14 18 18 C 1.47733 * 119.99799 * 355.00909 * 16 15 14 19 19 N 1.33025 * 120.15509 * 76.11263 * 18 16 15 20 20 C 1.31732 * 120.00303 * 180.02562 * 19 18 16 21 21 C 1.38800 * 120.34546 * 359.97438 * 20 19 18 22 22 N 1.32031 * 120.32548 * 359.97438 * 21 20 19 23 23 C 1.32834 * 119.98310 * 359.75044 * 22 21 20 24 24 N 1.38268 * 120.16933 * 180.25571 * 23 22 21 25 25 C 1.47080 * 118.23855 * 308.81846 * 15 14 13 26 26 C 1.46900 * 110.99915 * 176.92041 * 12 11 10 27 27 C 1.47810 * 134.45944 * 359.86727 * 9 7 2 28 28 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.76964 * 41.05720 * 10 9 7 30 30 H 1.08998 * 113.87219 * 269.67465 * 10 9 7 31 31 H 1.09001 * 113.74095 * 269.15279 * 11 10 9 32 32 H 1.09004 * 109.49233 * 292.70391 * 13 12 11 33 33 H 1.09002 * 109.49401 * 52.78671 * 13 12 11 34 34 H 1.09005 * 109.62499 * 294.11963 * 14 13 12 35 35 H 1.09000 * 109.63284 * 173.54294 * 14 13 12 36 36 H 1.07998 * 119.82509 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.83897 * 180.02562 * 21 20 19 38 38 H 0.97006 * 120.00128 * 185.32799 * 24 23 22 39 39 H 0.97003 * 119.99925 * 5.32572 * 24 23 22 40 40 H 1.08997 * 109.63192 * 291.47433 * 25 15 14 41 41 H 1.09001 * 109.62990 * 170.88895 * 25 15 14 42 42 H 1.08996 * 109.49825 * 307.21442 * 26 12 11 43 43 H 1.09007 * 109.48789 * 67.29739 * 26 12 11 44 44 H 1.08999 * 113.77476 * 90.37981 * 27 9 7 45 45 H 1.09003 * 113.83396 * 318.91410 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3471 -4.0828 0.6409 12 7 -0.3351 -5.2645 0.0965 13 6 -0.5448 -5.1309 -1.3512 14 6 -1.0906 -6.4498 -1.9088 15 7 -2.2869 -6.8232 -1.1389 16 6 -3.4404 -7.1363 -1.7617 17 8 -4.3923 -7.5299 -1.1161 18 6 -3.5480 -7.0012 -3.2289 19 7 -2.9834 -7.9041 -4.0262 20 6 -3.0808 -7.7804 -5.3341 21 6 -3.7712 -6.7112 -5.8879 22 7 -4.3375 -5.8080 -5.1090 23 6 -4.2521 -5.9229 -3.7884 24 7 -4.8482 -4.9822 -2.9690 25 6 -2.1912 -6.8452 0.3286 26 6 -1.6021 -5.5107 0.7981 27 6 -0.1057 -2.7570 0.0025 28 1 -0.4850 0.8401 -0.0004 29 1 2.5625 -4.0323 0.6558 30 1 1.8326 -4.2366 -0.9962 31 1 0.3595 -4.0638 1.7307 32 1 -1.2604 -4.3313 -1.5428 33 1 0.4028 -4.8956 -1.8358 34 1 -0.3346 -7.2291 -1.8115 35 1 -1.3556 -6.3220 -2.9583 36 1 -2.6217 -8.5153 -5.9788 37 1 -3.8463 -6.6181 -6.9613 38 1 -4.7198 -5.0246 -2.0084 39 1 -5.3947 -4.2797 -3.3548 40 1 -1.5411 -7.6624 0.6409 41 1 -3.1840 -6.9786 0.7583 42 1 -1.4213 -5.5508 1.8722 43 1 -2.3029 -4.7057 0.5765 44 1 -0.5312 -2.8722 -0.9944 45 1 -0.7188 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941351091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:50 Heat of formation + Delta-G solvation = 77.502940 kcal Electronic energy + Delta-G solvation = -29176.653599 eV Core-core repulsion = 25230.883536 eV Total energy + Delta-G solvation = -3945.770063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.40793 -41.17988 -40.15287 -38.02549 -36.60813 -35.32658 -34.77610 -33.78398 -32.33061 -30.90440 -29.76320 -28.04382 -26.65732 -26.36294 -24.96404 -24.68388 -24.35224 -22.76691 -20.99974 -20.08109 -19.51180 -18.78544 -18.67622 -18.60184 -17.75791 -16.97567 -16.87108 -16.63259 -16.28481 -16.20860 -15.95480 -15.75088 -15.61068 -15.49420 -15.15872 -14.51874 -14.21287 -13.84782 -13.79996 -13.48264 -13.42384 -13.20676 -12.92191 -12.82827 -12.70380 -12.66238 -12.28429 -12.26232 -12.13729 -11.91175 -11.79132 -11.71406 -11.42461 -11.39727 -10.86157 -10.16820 -9.93767 -9.28168 -9.17768 -8.87693 -7.92682 -5.26386 -0.30010 0.22875 1.20115 1.43788 1.45209 1.54060 1.70381 2.20839 2.43198 2.66718 2.77739 3.03405 3.27523 3.32739 3.47730 3.55657 3.77138 3.81444 3.92314 3.99599 4.10363 4.16034 4.20009 4.34116 4.42930 4.43441 4.47586 4.63723 4.67691 4.77298 4.84533 4.89956 4.96840 5.04293 5.20937 5.26432 5.30076 5.36009 5.47499 5.73716 5.88861 5.99278 6.07936 6.15321 6.17547 6.44563 6.82623 6.85546 6.89013 7.58555 8.53625 9.23369 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.003151 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.351970 B = 8885.057341 C = 9721.288388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.232 4.232 8 H 0.085 0.915 9 N -0.639 5.639 10 C 0.128 3.872 11 C 0.066 3.934 12 N -0.514 5.514 13 C 0.043 3.957 14 C 0.131 3.869 15 N -0.593 5.593 16 C 0.586 3.414 17 O -0.563 6.563 18 C -0.057 4.057 19 N -0.393 5.393 20 C -0.012 4.012 21 C 0.134 3.866 22 N -0.518 5.518 23 C 0.382 3.618 24 N -0.824 5.824 25 C 0.121 3.879 26 C 0.044 3.956 27 C 0.134 3.866 28 H 0.247 0.753 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.213 0.787 37 H 0.219 0.781 38 H 0.412 0.588 39 H 0.417 0.583 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.025 0.975 44 H 0.019 0.981 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -17.058 -8.783 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.103 0.897 9 N -0.366 5.366 10 C 0.003 3.997 11 C -0.043 4.043 12 N -0.238 5.238 13 C -0.086 4.086 14 C 0.009 3.991 15 N -0.324 5.324 16 C 0.373 3.627 17 O -0.441 6.441 18 C -0.205 4.205 19 N -0.109 5.109 20 C -0.178 4.178 21 C -0.030 4.030 22 N -0.242 5.242 23 C 0.141 3.859 24 N -0.366 5.366 25 C -0.001 4.001 26 C -0.085 4.085 27 C 0.007 3.993 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.229 0.771 37 H 0.235 0.765 38 H 0.243 0.757 39 H 0.249 0.751 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.043 0.957 44 H 0.037 0.963 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.616 -17.327 -8.233 20.292 hybrid contribution -0.472 2.410 -0.081 2.457 sum -7.088 -14.917 -8.314 18.490 Atomic orbital electron populations 1.70021 1.06510 1.25451 1.58407 1.25605 0.96501 1.00850 1.03005 0.85095 0.77820 0.79108 0.77434 1.21447 1.22175 1.19056 1.19431 0.90890 0.83286 1.42489 0.89692 1.46193 1.03448 1.00793 1.86192 1.22798 0.95889 0.82873 0.98116 1.23859 0.94796 0.86391 0.99266 1.62051 1.21809 1.37113 1.02836 1.22512 1.00789 0.95840 0.89433 1.21798 0.86298 0.96407 0.94644 1.48200 1.10373 1.65757 1.08113 1.17824 0.82316 0.76627 0.85981 1.90780 1.38842 1.47439 1.67062 1.20904 1.07787 0.97062 0.94709 1.68224 1.13039 1.22919 1.06677 1.24176 1.01958 1.01104 0.90552 1.24578 0.87986 0.87797 1.02668 1.68217 1.23984 1.30120 1.01833 1.19086 0.89344 0.87841 0.89597 1.42135 1.54564 1.31024 1.08827 1.21875 1.02645 0.97785 0.77761 1.22509 0.89680 0.95976 1.00329 1.22851 0.87375 0.92645 0.96473 0.94452 0.92281 0.93222 0.87470 0.95886 0.89426 0.88547 0.90222 0.77065 0.76483 0.75745 0.75064 0.88659 0.88592 0.87461 0.95701 0.96332 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 11.39 21.65 0.25 -57.40 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.23 -12.95 10.70 84.03 0.90 -12.05 16 8 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.64 -32.23 3.70 -716.66 -2.65 -34.89 16 10 C 0.13 4.93 8.42 86.48 0.73 5.66 16 11 C 0.07 2.32 4.03 46.67 0.19 2.51 16 12 N -0.51 -14.35 4.76 -875.97 -4.17 -18.52 16 13 C 0.04 1.21 4.47 86.39 0.39 1.59 16 14 C 0.13 3.07 6.51 86.35 0.56 3.64 16 15 N -0.59 -14.71 3.01 -821.45 -2.47 -17.18 16 16 C 0.59 16.47 6.09 86.75 0.53 17.00 16 17 O -0.56 -18.72 16.58 -3.93 -0.07 -18.79 16 18 C -0.06 -1.47 4.68 42.00 0.20 -1.27 16 19 N -0.39 -8.91 10.09 -183.94 -1.86 -10.77 16 20 C -0.01 -0.18 11.21 84.84 0.95 0.77 16 21 C 0.13 1.87 11.22 84.80 0.95 2.82 16 22 N -0.52 -11.07 10.52 -191.87 -2.02 -13.09 16 23 C 0.38 9.31 7.77 133.50 1.04 10.35 16 24 N -0.82 -18.03 8.97 -54.84 -0.49 -18.52 16 25 C 0.12 2.70 6.58 86.35 0.57 3.27 16 26 C 0.04 1.07 5.61 86.38 0.49 1.55 16 27 C 0.13 6.20 6.81 86.45 0.59 6.79 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 1.81 6.22 -2.39 -0.01 1.80 16 31 H 0.11 3.68 8.04 -2.39 -0.02 3.66 16 32 H 0.02 0.76 6.45 -2.38 -0.02 0.75 16 33 H 0.09 2.58 6.06 -2.39 -0.01 2.56 16 34 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.08 1.88 6.13 -2.39 -0.01 1.86 16 36 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.41 9.31 7.67 -92.70 -0.71 8.59 16 39 H 0.42 7.61 8.95 -92.71 -0.83 6.78 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.10 2.17 7.10 -2.39 -0.02 2.16 16 42 H 0.11 2.27 8.04 -2.39 -0.02 2.25 16 43 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.02 0.91 5.64 -2.39 -0.01 0.90 16 45 H 0.03 1.68 7.16 -2.39 -0.02 1.66 16 Total: -1.00 -75.46 361.81 -3.40 -78.86 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.48 Total: 23.41 kcal Atomic # 6 Polarization: 30.75 SS G_CDS: 8.54 Total: 39.29 kcal Atomic # 7 Polarization: -156.94 SS G_CDS: -13.41 Total: -170.36 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.07 Total: -18.79 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.46 -3.40 -78.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941351091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.361 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds