Wall clock time and date at job start Tue Mar 31 2020 16:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00149 * 2 1 4 4 H 1.08005 * 120.00211 * 203.54030 * 3 2 1 5 5 C 1.38819 * 120.00086 * 23.53777 * 3 2 1 6 6 N 1.31613 * 119.99669 * 12.51970 * 5 3 2 7 7 Si 1.86798 * 119.99826 * 192.51979 * 5 3 2 8 8 H 1.48496 * 109.47182 * 90.00301 * 7 5 3 9 9 H 1.48504 * 109.46741 * 210.00063 * 7 5 3 10 10 H 1.48500 * 109.47091 * 329.99704 * 7 5 3 11 11 C 1.46501 * 119.99872 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88499 * 182.42773 * 11 2 1 13 13 C 1.55155 * 111.00522 * 58.54773 * 11 2 1 14 14 C 1.54324 * 102.94323 * 206.38465 * 13 11 2 15 15 N 1.47029 * 107.26917 * 22.19416 * 14 13 11 16 16 C 1.34773 * 125.64555 * 181.02306 * 15 14 13 17 17 O 1.21277 * 120.00000 * 175.11770 * 16 15 14 18 18 C 1.50699 * 120.00016 * 355.38848 * 16 15 14 19 19 C 1.50693 * 115.55121 * 293.26967 * 18 16 15 20 20 C 1.38250 * 119.97588 * 145.90536 * 19 18 16 21 21 C 1.38202 * 120.02769 * 179.76535 * 20 19 18 22 22 C 1.38461 * 119.97023 * 0.50857 * 21 20 19 23 23 F 1.35101 * 120.02074 * 179.76421 * 22 21 20 24 24 C 1.38456 * 119.94978 * 359.74760 * 22 21 20 25 25 C 1.38195 * 119.97496 * 359.97438 * 24 22 21 26 26 C 1.53004 * 117.49923 * 147.60057 * 18 16 15 27 27 C 1.53000 * 117.49759 * 78.94165 * 18 16 15 28 28 C 1.47419 * 108.70285 * 1.28571 * 15 14 13 29 29 H 1.09003 * 109.47524 * 275.17745 * 1 2 3 30 30 H 1.09005 * 109.47033 * 35.17364 * 1 2 3 31 31 H 1.09002 * 109.47546 * 155.17184 * 1 2 3 32 32 H 0.96998 * 119.99696 * 180.02562 * 6 5 3 33 33 H 1.08996 * 110.71796 * 88.02206 * 13 11 2 34 34 H 1.09005 * 110.87173 * 324.82184 * 13 11 2 35 35 H 1.08999 * 109.88501 * 262.77829 * 14 13 11 36 36 H 1.08998 * 109.88221 * 141.61048 * 14 13 11 37 37 H 1.08003 * 119.98322 * 0.02562 * 20 19 18 38 38 H 1.07993 * 120.01464 * 180.25893 * 21 20 19 39 39 H 1.07999 * 120.01374 * 180.02562 * 24 22 21 40 40 H 1.08000 * 119.98757 * 180.02562 * 25 24 22 41 41 H 1.09000 * 117.49609 * 359.97438 * 26 18 16 42 42 H 1.08997 * 117.50489 * 145.02129 * 26 18 16 43 43 H 1.09007 * 117.49625 * 214.97803 * 27 18 16 44 44 H 1.09000 * 117.49985 * 359.97438 * 27 18 16 45 45 H 1.09003 * 110.36565 * 94.48322 * 28 15 14 46 46 H 1.09000 * 110.36958 * 216.80715 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1623 1.2248 -0.3736 5 6 1.5422 2.3381 0.4801 6 7 0.4162 2.2554 1.1564 7 14 2.3231 4.0058 0.1662 8 1 1.8054 4.5626 -1.1093 9 1 1.9871 4.9273 1.2812 10 1 3.7976 3.8531 0.0776 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0965 0.0436 13 6 1.8210 -2.1288 -1.2347 14 6 2.0904 -3.5685 -0.7486 15 7 2.0433 -3.5491 0.7208 16 6 2.2484 -4.6092 1.5274 17 8 2.2725 -4.4599 2.7307 18 6 2.4539 -5.9790 0.9337 19 6 1.2591 -6.5680 0.2292 20 6 1.4388 -7.3719 -0.8810 21 6 0.3441 -7.9166 -1.5251 22 6 -0.9337 -7.6482 -1.0642 23 9 -2.0049 -8.1763 -1.6959 24 6 -1.1128 -6.8386 0.0446 25 6 -0.0163 -6.2997 0.6904 26 6 3.3784 -6.9417 1.6818 27 6 3.8381 -6.3035 0.3685 28 6 1.7282 -2.1793 1.1656 29 1 -0.3634 0.0927 1.0235 30 1 -0.3633 0.8401 -0.5920 31 1 -0.3634 -0.9327 -0.4315 32 1 -0.0084 3.0606 1.4915 33 1 2.4580 -1.8831 -2.0843 34 1 0.7698 -1.9992 -1.4924 35 1 3.0750 -3.8947 -1.0835 36 1 1.3238 -4.2399 -1.1352 37 1 2.4355 -7.5779 -1.2426 38 1 0.4850 -8.5480 -2.3898 39 1 -2.1090 -6.6289 0.4051 40 1 -0.1557 -5.6685 1.5555 41 1 3.8382 -6.5841 2.6030 42 1 3.1226 -8.0011 1.6640 43 1 3.8846 -6.9434 -0.5127 44 1 4.6001 -5.5261 0.4257 45 1 0.6557 -2.0702 1.3271 46 1 2.2762 -1.9409 2.0772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971639755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:41 Heat of formation + Delta-G solvation = 6.959116 kcal Electronic energy + Delta-G solvation = -28858.582796 eV Core-core repulsion = 24857.541011 eV Total energy + Delta-G solvation = -4001.041785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -49.10458 -40.72705 -39.01811 -37.66422 -36.26972 -34.81346 -31.70172 -31.41182 -30.43777 -29.76112 -28.07011 -26.09555 -25.18541 -23.52669 -23.32198 -22.42009 -22.38201 -21.36839 -19.34117 -18.83417 -18.03770 -17.20758 -17.06168 -16.44846 -15.92058 -15.85593 -15.75564 -15.26199 -14.99823 -14.51202 -14.16726 -13.76481 -13.62474 -13.45085 -13.34564 -13.25523 -12.94017 -12.72485 -12.45162 -12.44360 -12.18142 -11.90937 -11.73755 -11.48698 -11.31084 -10.92405 -10.88315 -10.85281 -10.76132 -10.52260 -10.49480 -10.28641 -9.91553 -9.86223 -9.63867 -9.38948 -8.71042 -8.62357 -8.33839 -6.82951 -5.78718 -3.27436 0.81490 0.95463 2.63289 3.05938 3.17219 3.35513 3.41902 3.43267 3.70093 3.99136 4.20572 4.36522 4.43538 4.49371 4.60267 4.66691 4.74539 4.94110 5.00994 5.16632 5.20877 5.31479 5.34412 5.37489 5.51461 5.59031 5.63198 5.64236 5.75384 5.80700 5.83775 5.88064 5.88854 5.99216 6.00268 6.21065 6.28781 6.36427 6.51503 6.59306 6.60844 6.74854 6.85114 7.30458 7.67448 7.75379 7.76716 8.30046 8.34196 9.16014 9.78064 10.27053 11.25442 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.003023 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.586794 B = 9260.428111 C =10107.362736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.108 3.892 15 N -0.604 5.604 16 C 0.562 3.438 17 O -0.540 6.540 18 C -0.117 4.117 19 C -0.046 4.046 20 C -0.088 4.088 21 C -0.150 4.150 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.145 4.145 25 C -0.076 4.076 26 C -0.133 4.133 27 C -0.157 4.157 28 C 0.086 3.914 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.002 0.998 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 -21.720 -5.848 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.064 3.936 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.016 4.016 15 N -0.336 5.336 16 C 0.349 3.651 17 O -0.417 6.417 18 C -0.121 4.121 19 C -0.046 4.046 20 C -0.106 4.106 21 C -0.168 4.168 22 C 0.075 3.925 23 F -0.120 7.120 24 C -0.164 4.164 25 C -0.094 4.094 26 C -0.171 4.171 27 C -0.194 4.194 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.204 -21.512 -5.103 22.219 hybrid contribution -0.071 0.875 -0.268 0.918 sum 2.134 -20.637 -5.372 21.431 Atomic orbital electron populations 1.20814 0.82453 0.95576 0.99662 1.43847 1.01873 0.99855 1.84851 1.19224 0.98931 0.85300 1.35746 0.91199 1.25076 0.97836 0.98714 0.97668 1.70062 1.19345 1.27488 1.37842 0.86215 0.78816 0.83880 0.77365 1.21413 1.21697 1.20409 1.21491 0.96344 0.85697 0.90109 0.90382 1.23227 1.02828 0.92873 1.00510 1.22013 1.00769 0.98870 0.79943 1.48417 1.68461 1.09419 1.07335 1.18860 0.76814 0.83613 0.85788 1.90710 1.51590 1.85104 1.14317 1.20070 0.91410 0.94893 1.05694 1.18788 0.92491 0.97926 0.95427 1.20872 0.98916 0.96454 0.94391 1.21081 0.90858 1.02875 1.02015 1.17736 0.83536 0.97450 0.93782 1.91502 1.54509 1.84705 1.81237 1.21143 1.00597 0.98903 0.95779 1.20901 0.91035 0.98182 0.99311 1.23096 0.99592 0.97773 0.96601 1.23204 0.94346 1.03583 0.98222 1.23178 1.00994 0.79126 1.00485 0.94883 0.93895 0.97992 0.93589 0.90635 0.90563 0.91874 0.92146 0.84631 0.84575 0.84486 0.85041 0.87303 0.87735 0.87456 0.87719 0.91339 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 7.59 59.84 0.45 4.22 16 2 N -0.58 -13.99 2.96 -170.89 -0.51 -14.49 16 3 C -0.26 -6.98 9.60 -15.06 -0.14 -7.12 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 5 C 0.01 0.17 5.11 -17.43 -0.09 0.08 16 6 N -0.90 -25.83 10.71 55.49 0.59 -25.23 16 7 Si 0.91 21.41 29.57 -169.99 -5.03 16.39 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.17 3.39 3.55 -65.66 -0.23 3.16 16 12 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 13 C -0.15 -2.40 6.48 -24.90 -0.16 -2.56 16 14 C 0.11 1.42 6.33 -3.06 -0.02 1.40 16 15 N -0.60 -9.51 3.32 -170.38 -0.57 -10.08 16 16 C 0.56 8.83 6.05 -10.99 -0.07 8.76 16 17 O -0.54 -10.52 16.95 5.56 0.09 -10.43 16 18 C -0.12 -1.34 1.64 -156.81 -0.26 -1.60 16 19 C -0.05 -0.49 4.45 -104.62 -0.47 -0.95 16 20 C -0.09 -0.75 9.39 -39.59 -0.37 -1.12 16 21 C -0.15 -1.30 10.03 -39.51 -0.40 -1.70 16 22 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 23 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 24 C -0.15 -1.54 10.03 -39.52 -0.40 -1.94 16 25 C -0.08 -0.88 9.32 -39.60 -0.37 -1.25 16 26 C -0.13 -1.28 9.76 -26.69 -0.26 -1.54 16 27 C -0.16 -1.34 9.58 -26.69 -0.26 -1.60 16 28 C 0.09 1.64 6.50 -2.41 -0.02 1.62 16 29 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 30 H 0.04 1.09 7.37 -51.93 -0.38 0.71 16 31 H 0.00 0.03 6.34 -51.93 -0.33 -0.30 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.25 6.38 -51.93 -0.33 0.92 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.75 7.37 -51.93 -0.38 0.37 16 37 H 0.14 0.82 5.92 -52.48 -0.31 0.51 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.68 7.45 -52.49 -0.39 1.29 16 41 H 0.11 1.17 8.01 -51.93 -0.42 0.75 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.65 6.07 -51.92 -0.32 0.34 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 46 H 0.07 1.54 7.99 -51.93 -0.41 1.13 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -30.86 374.90 -9.57 -40.44 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.52 Total: 0.71 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.34 Total: -1.44 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.48 Total: -49.80 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.86 -9.57 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971639755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.397 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds