Wall clock time and date at job start Tue Mar 31 2020 16:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00149 * 2 1 4 4 H 1.08005 * 120.00211 * 203.54030 * 3 2 1 5 5 C 1.38819 * 120.00086 * 23.53777 * 3 2 1 6 6 N 1.31613 * 119.99669 * 12.51970 * 5 3 2 7 7 Si 1.86798 * 119.99826 * 192.51979 * 5 3 2 8 8 H 1.48496 * 109.47182 * 90.00301 * 7 5 3 9 9 H 1.48504 * 109.46741 * 210.00063 * 7 5 3 10 10 H 1.48500 * 109.47091 * 329.99704 * 7 5 3 11 11 C 1.46501 * 119.99872 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88499 * 182.42773 * 11 2 1 13 13 C 1.55155 * 111.00522 * 58.54773 * 11 2 1 14 14 C 1.54324 * 102.94323 * 206.38465 * 13 11 2 15 15 N 1.47029 * 107.26917 * 22.19416 * 14 13 11 16 16 C 1.34773 * 125.64555 * 181.02306 * 15 14 13 17 17 O 1.21277 * 120.00000 * 175.11770 * 16 15 14 18 18 C 1.50699 * 120.00016 * 355.38848 * 16 15 14 19 19 C 1.50693 * 115.55121 * 293.26967 * 18 16 15 20 20 C 1.38250 * 119.97588 * 145.90536 * 19 18 16 21 21 C 1.38202 * 120.02769 * 179.76535 * 20 19 18 22 22 C 1.38461 * 119.97023 * 0.50857 * 21 20 19 23 23 F 1.35101 * 120.02074 * 179.76421 * 22 21 20 24 24 C 1.38456 * 119.94978 * 359.74760 * 22 21 20 25 25 C 1.38195 * 119.97496 * 359.97438 * 24 22 21 26 26 C 1.53004 * 117.49923 * 147.60057 * 18 16 15 27 27 C 1.53000 * 117.49759 * 78.94165 * 18 16 15 28 28 C 1.47419 * 108.70285 * 1.28571 * 15 14 13 29 29 H 1.09003 * 109.47524 * 275.17745 * 1 2 3 30 30 H 1.09005 * 109.47033 * 35.17364 * 1 2 3 31 31 H 1.09002 * 109.47546 * 155.17184 * 1 2 3 32 32 H 0.96998 * 119.99696 * 180.02562 * 6 5 3 33 33 H 1.08996 * 110.71796 * 88.02206 * 13 11 2 34 34 H 1.09005 * 110.87173 * 324.82184 * 13 11 2 35 35 H 1.08999 * 109.88501 * 262.77829 * 14 13 11 36 36 H 1.08998 * 109.88221 * 141.61048 * 14 13 11 37 37 H 1.08003 * 119.98322 * 0.02562 * 20 19 18 38 38 H 1.07993 * 120.01464 * 180.25893 * 21 20 19 39 39 H 1.07999 * 120.01374 * 180.02562 * 24 22 21 40 40 H 1.08000 * 119.98757 * 180.02562 * 25 24 22 41 41 H 1.09000 * 117.49609 * 359.97438 * 26 18 16 42 42 H 1.08997 * 117.50489 * 145.02129 * 26 18 16 43 43 H 1.09007 * 117.49625 * 214.97803 * 27 18 16 44 44 H 1.09000 * 117.49985 * 359.97438 * 27 18 16 45 45 H 1.09003 * 110.36565 * 94.48322 * 28 15 14 46 46 H 1.09000 * 110.36958 * 216.80715 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1623 1.2248 -0.3736 5 6 1.5422 2.3381 0.4801 6 7 0.4162 2.2554 1.1564 7 14 2.3231 4.0058 0.1662 8 1 1.8054 4.5626 -1.1093 9 1 1.9871 4.9273 1.2812 10 1 3.7976 3.8531 0.0776 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0965 0.0436 13 6 1.8210 -2.1288 -1.2347 14 6 2.0904 -3.5685 -0.7486 15 7 2.0433 -3.5491 0.7208 16 6 2.2484 -4.6092 1.5274 17 8 2.2725 -4.4599 2.7307 18 6 2.4539 -5.9790 0.9337 19 6 1.2591 -6.5680 0.2292 20 6 1.4388 -7.3719 -0.8810 21 6 0.3441 -7.9166 -1.5251 22 6 -0.9337 -7.6482 -1.0642 23 9 -2.0049 -8.1763 -1.6959 24 6 -1.1128 -6.8386 0.0446 25 6 -0.0163 -6.2997 0.6904 26 6 3.3784 -6.9417 1.6818 27 6 3.8381 -6.3035 0.3685 28 6 1.7282 -2.1793 1.1656 29 1 -0.3634 0.0927 1.0235 30 1 -0.3633 0.8401 -0.5920 31 1 -0.3634 -0.9327 -0.4315 32 1 -0.0084 3.0606 1.4915 33 1 2.4580 -1.8831 -2.0843 34 1 0.7698 -1.9992 -1.4924 35 1 3.0750 -3.8947 -1.0835 36 1 1.3238 -4.2399 -1.1352 37 1 2.4355 -7.5779 -1.2426 38 1 0.4850 -8.5480 -2.3898 39 1 -2.1090 -6.6289 0.4051 40 1 -0.1557 -5.6685 1.5555 41 1 3.8382 -6.5841 2.6030 42 1 3.1226 -8.0011 1.6640 43 1 3.8846 -6.9434 -0.5127 44 1 4.6001 -5.5261 0.4257 45 1 0.6557 -2.0702 1.3271 46 1 2.2762 -1.9409 2.0772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971639755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:40 Heat of formation + Delta-G solvation = -9.511638 kcal Electronic energy + Delta-G solvation = -28859.297021 eV Core-core repulsion = 24857.541011 eV Total energy + Delta-G solvation = -4001.756011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.89803 -41.76209 -40.07655 -38.98213 -37.24079 -36.56522 -33.47274 -32.18813 -31.35685 -31.11447 -29.56634 -28.08957 -26.38694 -24.76613 -24.14215 -23.82208 -23.15312 -22.35742 -20.97176 -19.90517 -18.98313 -18.83155 -18.24824 -17.54950 -17.15539 -17.02100 -16.61741 -16.53360 -16.04266 -15.74360 -15.49020 -15.00330 -14.89095 -14.62804 -14.49610 -14.31926 -14.23510 -14.12042 -13.77858 -13.57758 -13.42594 -13.14325 -13.07194 -12.78955 -12.51784 -12.41813 -12.40616 -12.20608 -12.06838 -12.02993 -11.84044 -11.64272 -11.61377 -11.41955 -10.86356 -10.65821 -10.11161 -9.70177 -9.48343 -8.80965 -7.84888 -5.36076 0.05365 0.23018 1.45088 1.47738 1.48048 1.57249 1.86370 2.40408 2.50348 2.90498 3.24660 3.26595 3.40202 3.42370 3.54691 3.71565 3.86869 3.91831 3.93205 3.97359 4.04079 4.18771 4.24526 4.32498 4.43187 4.43752 4.62970 4.68457 4.70712 4.77010 4.85283 4.88139 4.98006 4.98948 5.02219 5.13663 5.16591 5.19898 5.20869 5.25694 5.29561 5.40999 5.47231 5.63347 5.68276 5.86458 6.29937 6.52458 7.05841 7.11908 7.81863 8.26594 9.17750 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.003023 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.586794 B = 9260.428111 C =10107.362736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.600 5.600 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.972 3.028 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.266 1.266 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.114 3.886 15 N -0.603 5.603 16 C 0.558 3.442 17 O -0.590 6.590 18 C -0.133 4.133 19 C -0.047 4.047 20 C -0.074 4.074 21 C -0.138 4.138 22 C 0.080 3.920 23 F -0.148 7.148 24 C -0.154 4.154 25 C -0.097 4.097 26 C -0.135 4.135 27 C -0.128 4.128 28 C 0.097 3.903 29 H -0.001 1.001 30 H 0.017 0.983 31 H 0.032 0.968 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.102 0.898 45 H 0.047 0.953 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -24.406 -9.072 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.321 5.321 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.800 3.200 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.180 4.180 14 C -0.008 4.008 15 N -0.335 5.335 16 C 0.348 3.652 17 O -0.471 6.471 18 C -0.136 4.136 19 C -0.048 4.048 20 C -0.092 4.092 21 C -0.156 4.156 22 C 0.061 3.939 23 F -0.127 7.127 24 C -0.173 4.173 25 C -0.116 4.116 26 C -0.172 4.172 27 C -0.165 4.165 28 C -0.029 4.029 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.146 0.854 43 H 0.165 0.835 44 H 0.121 0.879 45 H 0.066 0.934 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.472 -24.245 -8.370 26.036 hybrid contribution -0.759 1.634 0.790 1.967 sum 3.713 -22.611 -7.580 24.135 Atomic orbital electron populations 1.20477 0.82800 0.95949 0.97372 1.44024 1.01968 1.00931 1.85175 1.19612 0.99194 0.86414 1.34579 0.90517 1.25865 0.98578 1.02151 0.98049 1.70244 1.20926 1.27793 1.39474 0.85200 0.78548 0.79546 0.76738 1.21023 1.22571 1.19062 1.21641 0.95763 0.84505 0.92163 0.90555 1.23080 1.02747 0.93161 0.98981 1.22151 1.03273 0.97578 0.77805 1.48448 1.68323 1.08019 1.08700 1.19710 0.75224 0.85076 0.85200 1.90679 1.53628 1.86079 1.16733 1.19908 0.93503 0.92331 1.07858 1.18778 0.91255 0.98570 0.96180 1.21166 1.00515 0.94770 0.92713 1.21422 0.89773 1.02137 1.02300 1.17939 0.84298 0.97795 0.93860 1.91486 1.55073 1.84812 1.81290 1.21163 1.00499 0.99320 0.96286 1.20771 0.92357 0.99161 0.99285 1.23196 0.98714 0.98564 0.96727 1.23430 0.91233 1.03052 0.98765 1.22726 0.99123 0.81724 0.99282 0.98242 0.96370 0.94926 0.94276 0.88445 0.91353 0.88490 0.90400 0.80944 0.81693 0.84494 0.87788 0.89279 0.85378 0.83483 0.87944 0.93443 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 7.59 127.77 0.97 9.74 16 2 N -0.60 -29.26 2.96 -694.57 -2.05 -31.31 16 3 C -0.27 -14.39 9.60 84.04 0.81 -13.58 16 4 H 0.08 3.93 7.86 -2.91 -0.02 3.91 16 5 C -0.05 -2.84 5.11 84.86 0.43 -2.40 16 6 N -0.94 -55.78 10.71 21.65 0.23 -55.55 16 7 Si 0.97 44.64 29.57 68.60 2.03 46.67 16 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.17 6.52 3.55 46.46 0.17 6.69 16 12 H 0.08 2.97 7.95 -2.39 -0.02 2.95 16 13 C -0.14 -4.02 6.48 31.78 0.21 -3.81 16 14 C 0.11 2.65 6.33 86.73 0.55 3.20 16 15 N -0.60 -18.72 3.32 -811.35 -2.70 -21.42 16 16 C 0.56 17.52 6.05 87.66 0.53 18.05 16 17 O -0.59 -24.19 16.95 -3.02 -0.05 -24.24 16 18 C -0.13 -2.72 1.64 -53.67 -0.09 -2.81 16 19 C -0.05 -0.87 4.45 -19.86 -0.09 -0.96 16 20 C -0.07 -0.87 9.39 22.26 0.21 -0.67 16 21 C -0.14 -1.78 10.03 22.31 0.22 -1.55 16 22 C 0.08 1.48 7.30 22.38 0.16 1.65 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 24 C -0.15 -3.19 10.03 22.31 0.22 -2.96 16 25 C -0.10 -2.22 9.32 22.26 0.21 -2.01 16 26 C -0.13 -2.23 9.76 30.62 0.30 -1.93 16 27 C -0.13 -1.59 9.58 30.62 0.29 -1.30 16 28 C 0.10 3.83 6.50 86.93 0.56 4.39 16 29 H 0.00 -0.04 7.33 -2.39 -0.02 -0.06 16 30 H 0.02 0.94 7.37 -2.38 -0.02 0.92 16 31 H 0.03 1.36 6.34 -2.39 -0.02 1.34 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.09 6.38 -2.38 -0.02 2.08 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.62 7.37 -2.39 -0.02 1.61 16 37 H 0.17 0.76 5.92 -2.91 -0.02 0.74 16 38 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.10 2.88 7.45 -2.91 -0.02 2.86 16 41 H 0.09 1.85 8.01 -2.39 -0.02 1.83 16 42 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.15 0.68 6.07 -2.38 -0.01 0.66 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 2.05 7.06 -2.39 -0.02 2.04 16 46 H 0.04 1.90 7.99 -2.39 -0.02 1.88 16 Total: -1.00 -72.31 374.90 4.89 -67.42 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.99 Total: 10.94 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.67 Total: 9.73 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.52 Total: -108.28 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.31 4.89 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971639755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.905 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds