Wall clock time and date at job start Tue Mar 31 2020 16:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00174 * 2 1 4 4 H 1.08003 * 120.00066 * 204.33825 * 3 2 1 5 5 C 1.38812 * 120.00235 * 24.33645 * 3 2 1 6 6 N 1.31618 * 119.99571 * 9.93276 * 5 3 2 7 7 Si 1.86800 * 120.00149 * 189.92912 * 5 3 2 8 8 H 1.48497 * 109.46825 * 90.00287 * 7 5 3 9 9 H 1.48499 * 109.47181 * 210.00307 * 7 5 3 10 10 H 1.48496 * 109.47132 * 330.00515 * 7 5 3 11 11 C 1.46503 * 119.99748 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.89005 * 183.88009 * 11 2 1 13 13 C 1.55159 * 111.00287 * 307.80393 * 11 2 1 14 14 C 1.54337 * 103.02023 * 153.37979 * 13 11 2 15 15 N 1.47025 * 107.26617 * 338.14076 * 14 13 11 16 16 C 1.34775 * 125.64566 * 178.84795 * 15 14 13 17 17 O 1.21285 * 119.99514 * 184.61120 * 16 15 14 18 18 C 1.50694 * 120.00107 * 4.61298 * 16 15 14 19 19 H 1.09002 * 110.27085 * 28.30651 * 18 16 15 20 20 C 1.54346 * 110.30311 * 266.23172 * 18 16 15 21 21 C 1.54345 * 102.39397 * 267.33500 * 20 18 16 22 22 C 1.51381 * 105.17148 * 333.64569 * 21 20 18 23 23 C 1.38454 * 130.36589 * 197.15810 * 22 21 20 24 24 C 1.38329 * 120.19522 * 180.02562 * 23 22 21 25 25 F 1.35101 * 120.06099 * 179.97438 * 24 23 22 26 26 C 1.38475 * 119.88025 * 359.97438 * 24 23 22 27 27 C 1.38065 * 119.90864 * 0.02562 * 26 24 23 28 28 C 1.38238 * 109.75458 * 17.18918 * 22 21 20 29 29 C 1.47424 * 108.70142 * 358.58386 * 15 14 13 30 30 H 1.08997 * 109.47136 * 266.05800 * 1 2 3 31 31 H 1.08999 * 109.47041 * 26.05269 * 1 2 3 32 32 H 1.08995 * 109.47355 * 146.05280 * 1 2 3 33 33 H 0.97006 * 119.99829 * 179.97438 * 6 5 3 34 34 H 1.08997 * 110.71695 * 271.94027 * 13 11 2 35 35 H 1.08999 * 110.71840 * 35.03724 * 13 11 2 36 36 H 1.09001 * 109.99114 * 218.66092 * 14 13 11 37 37 H 1.09002 * 109.77635 * 97.49836 * 14 13 11 38 38 H 1.08997 * 110.82518 * 149.11103 * 20 18 16 39 39 H 1.08997 * 110.99173 * 25.63633 * 20 18 16 40 40 H 1.08998 * 110.30625 * 214.71784 * 21 20 18 41 41 H 1.08997 * 110.38486 * 92.60814 * 21 20 18 42 42 H 1.08003 * 119.90631 * 0.05654 * 23 22 21 43 43 H 1.07997 * 120.05057 * 179.73144 * 26 24 23 44 44 H 1.07996 * 119.87518 * 179.97438 * 27 26 24 45 45 H 1.08996 * 110.36286 * 143.19660 * 29 15 14 46 46 H 1.09000 * 110.36945 * 265.40848 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1578 1.2274 -0.3855 5 6 1.5483 2.3346 0.4954 6 7 0.4041 2.2524 1.1407 7 14 2.3627 3.9971 0.2462 8 1 1.8865 4.5958 -1.0266 9 1 2.0127 4.8942 1.3767 10 1 3.8364 3.8230 0.1904 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0975 0.0684 13 6 1.7066 -2.1948 1.1435 14 6 2.0187 -3.6074 0.6057 15 7 2.1174 -3.5052 -0.8577 16 6 2.4008 -4.5196 -1.6985 17 8 2.5392 -4.3039 -2.8840 18 6 2.5455 -5.9218 -1.1658 19 1 1.9392 -6.0496 -0.2691 20 6 4.0269 -6.2278 -0.8587 21 6 4.5118 -6.8719 -2.1749 22 6 3.2728 -7.4766 -2.8001 23 6 3.1450 -8.4283 -3.7975 24 6 1.8902 -8.8343 -4.2150 25 9 1.7686 -9.7628 -5.1888 26 6 0.7590 -8.2874 -3.6330 27 6 0.8869 -7.3383 -2.6384 28 6 2.1429 -6.9306 -2.2202 29 6 1.8488 -2.1107 -1.2533 30 1 -0.3633 -0.0706 1.0252 31 1 -0.3633 0.9232 -0.4513 32 1 -0.3634 -0.8524 -0.5738 33 1 -0.0161 3.0551 1.4873 34 1 2.2591 -1.9986 2.0623 35 1 0.6356 -2.0729 1.3056 36 1 1.2171 -4.2947 0.8761 37 1 2.9651 -3.9580 1.0175 38 1 4.1137 -6.9293 -0.0291 39 1 4.5794 -5.3120 -0.6491 40 1 5.2481 -7.6484 -1.9672 41 1 4.9370 -6.1150 -2.8339 42 1 4.0275 -8.8554 -4.2506 43 1 -0.2219 -8.5991 -3.9598 44 1 0.0043 -6.9118 -2.1852 45 1 2.4846 -1.8250 -2.0913 46 1 0.7981 -1.9864 -1.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971953355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:40 Heat of formation + Delta-G solvation = -24.455997 kcal Electronic energy + Delta-G solvation = -28356.354500 eV Core-core repulsion = 24353.950453 eV Total energy + Delta-G solvation = -4002.404047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.08322 -40.92800 -39.22007 -37.38318 -35.46528 -34.84941 -31.99521 -31.51564 -29.83352 -29.07912 -28.59189 -27.26196 -26.08505 -23.91203 -23.24222 -22.40113 -21.58649 -21.36545 -19.36529 -18.95706 -17.40443 -17.22202 -17.00190 -16.68791 -16.02732 -15.81306 -15.77538 -15.23909 -14.76529 -14.38383 -14.18940 -14.03172 -13.77772 -13.42354 -13.35492 -13.11062 -12.74622 -12.62229 -12.53728 -12.32754 -12.19600 -12.03186 -11.79492 -11.49512 -11.40379 -11.34285 -11.05945 -10.95832 -10.84333 -10.53817 -10.46387 -10.27878 -9.96210 -9.90976 -9.67457 -9.14161 -8.64315 -8.60602 -8.37231 -6.83680 -5.82713 -3.29579 0.90561 1.01717 2.70208 3.06076 3.34444 3.40713 3.41729 3.44428 3.84923 4.11954 4.26704 4.42251 4.54660 4.67015 4.71970 4.83262 4.97183 4.98420 4.99382 5.20722 5.30918 5.32628 5.37182 5.47158 5.48014 5.54260 5.56257 5.69134 5.72817 5.80582 5.82912 5.88533 5.91577 5.98421 6.03115 6.26521 6.31125 6.34471 6.50226 6.60159 6.66823 6.77773 6.83786 7.31428 7.62759 7.73794 7.74324 8.29714 8.34148 9.14847 9.76129 10.25272 11.23519 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002356 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.513238 B =11882.594994 C =12022.425688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.534 3.466 17 O -0.537 6.537 18 C -0.067 4.067 19 H 0.102 0.898 20 C -0.105 4.105 21 C -0.082 4.082 22 C -0.050 4.050 23 C -0.145 4.145 24 C 0.100 3.900 25 F -0.141 7.141 26 C -0.155 4.155 27 C -0.067 4.067 28 C -0.085 4.085 29 C 0.084 3.916 30 H 0.020 0.980 31 H 0.060 0.940 32 H -0.004 1.004 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -22.065 -2.265 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.022 4.022 15 N -0.346 5.346 16 C 0.321 3.679 17 O -0.413 6.413 18 C -0.088 4.088 19 H 0.120 0.880 20 C -0.143 4.143 21 C -0.119 4.119 22 C -0.051 4.051 23 C -0.164 4.164 24 C 0.081 3.919 25 F -0.119 7.119 26 C -0.174 4.174 27 C -0.085 4.085 28 C -0.086 4.086 29 C -0.040 4.040 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.948 -21.841 -2.905 22.385 hybrid contribution 0.086 0.763 -0.194 0.792 sum 4.034 -21.078 -3.099 21.683 Atomic orbital electron populations 1.20813 0.82432 0.97438 0.97797 1.43805 1.01892 0.99849 1.84966 1.19240 0.99208 0.85607 1.34874 0.91272 1.25067 0.97707 0.98769 0.97833 1.70057 1.18301 1.27642 1.39078 0.86200 0.78923 0.83764 0.77307 1.21378 1.21666 1.20410 1.21412 0.96391 0.85891 0.90033 0.90400 1.23188 1.02939 0.92542 1.00453 1.22091 1.00594 0.99468 0.80040 1.48506 1.68857 1.09745 1.07476 1.19874 0.76916 0.85225 0.85848 1.90708 1.50483 1.84309 1.15847 1.20754 0.99119 0.91057 0.97901 0.87990 1.22241 0.92554 1.01766 0.97734 1.21100 0.94812 0.99886 0.96097 1.20329 0.96199 0.94171 0.94351 1.20474 0.96348 1.00121 0.99455 1.17485 0.94309 0.90769 0.89325 1.91493 1.96862 1.63309 1.60283 1.20968 0.98043 0.99613 0.98763 1.20456 0.96761 0.95582 0.95740 1.20079 0.93397 0.96932 0.98172 1.23016 1.01224 0.79182 1.00585 0.96145 0.92114 0.98578 0.93596 0.90457 0.90485 0.92065 0.91750 0.89540 0.89711 0.90021 0.89180 0.84898 0.84524 0.85186 0.90992 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 7.71 59.85 0.46 4.21 16 2 N -0.58 -13.91 2.96 -171.03 -0.51 -14.41 16 3 C -0.26 -6.86 9.61 -15.06 -0.14 -7.01 16 4 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 5 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 6 N -0.91 -25.46 10.67 55.49 0.59 -24.87 16 7 Si 0.91 21.30 29.57 -169.99 -5.03 16.27 16 8 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.17 3.32 3.55 -65.78 -0.23 3.09 16 12 H 0.08 1.51 7.96 -51.93 -0.41 1.10 16 13 C -0.15 -2.37 6.50 -24.89 -0.16 -2.53 16 14 C 0.10 1.25 6.20 -3.06 -0.02 1.23 16 15 N -0.61 -9.18 3.33 -170.51 -0.57 -9.75 16 16 C 0.53 8.01 6.82 -10.99 -0.07 7.93 16 17 O -0.54 -10.17 16.63 5.55 0.09 -10.08 16 18 C -0.07 -0.73 2.82 -91.89 -0.26 -0.99 16 19 H 0.10 0.91 7.13 -51.93 -0.37 0.54 16 20 C -0.11 -0.91 6.58 -25.32 -0.17 -1.08 16 21 C -0.08 -0.75 6.76 -26.84 -0.18 -0.93 16 22 C -0.05 -0.56 6.14 -104.21 -0.64 -1.19 16 23 C -0.15 -1.55 10.02 -39.47 -0.40 -1.95 16 24 C 0.10 1.13 7.30 -39.46 -0.29 0.84 16 25 F -0.14 -1.61 17.27 2.25 0.04 -1.58 16 26 C -0.16 -1.63 10.03 -39.56 -0.40 -2.02 16 27 C -0.07 -0.74 10.04 -39.54 -0.40 -1.13 16 28 C -0.09 -0.99 4.93 -104.19 -0.51 -1.51 16 29 C 0.08 1.51 6.51 -2.53 -0.02 1.50 16 30 H 0.02 0.50 7.62 -51.93 -0.40 0.11 16 31 H 0.06 1.58 6.72 -51.93 -0.35 1.23 16 32 H 0.00 -0.09 6.37 -51.93 -0.33 -0.42 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 36 H 0.06 0.64 7.76 -51.93 -0.40 0.24 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.07 1.40 7.99 -51.93 -0.42 0.98 16 46 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -31.15 372.13 -9.99 -41.14 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.71 Total: -0.83 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.52 Total: -1.51 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.48 Total: -49.03 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -9.99 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971953355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.687 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds