Wall clock time and date at job start Tue Mar 31 2020 16:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00174 * 2 1 4 4 H 1.08003 * 120.00066 * 204.33825 * 3 2 1 5 5 C 1.38812 * 120.00235 * 24.33645 * 3 2 1 6 6 N 1.31618 * 119.99571 * 9.93276 * 5 3 2 7 7 Si 1.86800 * 120.00149 * 189.92912 * 5 3 2 8 8 H 1.48497 * 109.46825 * 90.00287 * 7 5 3 9 9 H 1.48499 * 109.47181 * 210.00307 * 7 5 3 10 10 H 1.48496 * 109.47132 * 330.00515 * 7 5 3 11 11 C 1.46503 * 119.99748 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.89005 * 183.88009 * 11 2 1 13 13 C 1.55159 * 111.00287 * 307.80393 * 11 2 1 14 14 C 1.54337 * 103.02023 * 153.37979 * 13 11 2 15 15 N 1.47025 * 107.26617 * 338.14076 * 14 13 11 16 16 C 1.34775 * 125.64566 * 178.84795 * 15 14 13 17 17 O 1.21285 * 119.99514 * 184.61120 * 16 15 14 18 18 C 1.50694 * 120.00107 * 4.61298 * 16 15 14 19 19 H 1.09002 * 110.27085 * 28.30651 * 18 16 15 20 20 C 1.54346 * 110.30311 * 266.23172 * 18 16 15 21 21 C 1.54345 * 102.39397 * 267.33500 * 20 18 16 22 22 C 1.51381 * 105.17148 * 333.64569 * 21 20 18 23 23 C 1.38454 * 130.36589 * 197.15810 * 22 21 20 24 24 C 1.38329 * 120.19522 * 180.02562 * 23 22 21 25 25 F 1.35101 * 120.06099 * 179.97438 * 24 23 22 26 26 C 1.38475 * 119.88025 * 359.97438 * 24 23 22 27 27 C 1.38065 * 119.90864 * 0.02562 * 26 24 23 28 28 C 1.38238 * 109.75458 * 17.18918 * 22 21 20 29 29 C 1.47424 * 108.70142 * 358.58386 * 15 14 13 30 30 H 1.08997 * 109.47136 * 266.05800 * 1 2 3 31 31 H 1.08999 * 109.47041 * 26.05269 * 1 2 3 32 32 H 1.08995 * 109.47355 * 146.05280 * 1 2 3 33 33 H 0.97006 * 119.99829 * 179.97438 * 6 5 3 34 34 H 1.08997 * 110.71695 * 271.94027 * 13 11 2 35 35 H 1.08999 * 110.71840 * 35.03724 * 13 11 2 36 36 H 1.09001 * 109.99114 * 218.66092 * 14 13 11 37 37 H 1.09002 * 109.77635 * 97.49836 * 14 13 11 38 38 H 1.08997 * 110.82518 * 149.11103 * 20 18 16 39 39 H 1.08997 * 110.99173 * 25.63633 * 20 18 16 40 40 H 1.08998 * 110.30625 * 214.71784 * 21 20 18 41 41 H 1.08997 * 110.38486 * 92.60814 * 21 20 18 42 42 H 1.08003 * 119.90631 * 0.05654 * 23 22 21 43 43 H 1.07997 * 120.05057 * 179.73144 * 26 24 23 44 44 H 1.07996 * 119.87518 * 179.97438 * 27 26 24 45 45 H 1.08996 * 110.36286 * 143.19660 * 29 15 14 46 46 H 1.09000 * 110.36945 * 265.40848 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1578 1.2274 -0.3855 5 6 1.5483 2.3346 0.4954 6 7 0.4041 2.2524 1.1407 7 14 2.3627 3.9971 0.2462 8 1 1.8865 4.5958 -1.0266 9 1 2.0127 4.8942 1.3767 10 1 3.8364 3.8230 0.1904 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0975 0.0684 13 6 1.7066 -2.1948 1.1435 14 6 2.0187 -3.6074 0.6057 15 7 2.1174 -3.5052 -0.8577 16 6 2.4008 -4.5196 -1.6985 17 8 2.5392 -4.3039 -2.8840 18 6 2.5455 -5.9218 -1.1658 19 1 1.9392 -6.0496 -0.2691 20 6 4.0269 -6.2278 -0.8587 21 6 4.5118 -6.8719 -2.1749 22 6 3.2728 -7.4766 -2.8001 23 6 3.1450 -8.4283 -3.7975 24 6 1.8902 -8.8343 -4.2150 25 9 1.7686 -9.7628 -5.1888 26 6 0.7590 -8.2874 -3.6330 27 6 0.8869 -7.3383 -2.6384 28 6 2.1429 -6.9306 -2.2202 29 6 1.8488 -2.1107 -1.2533 30 1 -0.3633 -0.0706 1.0252 31 1 -0.3633 0.9232 -0.4513 32 1 -0.3634 -0.8524 -0.5738 33 1 -0.0161 3.0551 1.4873 34 1 2.2591 -1.9986 2.0623 35 1 0.6356 -2.0729 1.3056 36 1 1.2171 -4.2947 0.8761 37 1 2.9651 -3.9580 1.0175 38 1 4.1137 -6.9293 -0.0291 39 1 4.5794 -5.3120 -0.6491 40 1 5.2481 -7.6484 -1.9672 41 1 4.9370 -6.1150 -2.8339 42 1 4.0275 -8.8554 -4.2506 43 1 -0.2219 -8.5991 -3.9598 44 1 0.0043 -6.9118 -2.1852 45 1 2.4846 -1.8250 -2.0913 46 1 0.7981 -1.9864 -1.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971953355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:39 Heat of formation + Delta-G solvation = -40.723848 kcal Electronic energy + Delta-G solvation = -28357.059926 eV Core-core repulsion = 24353.950453 eV Total energy + Delta-G solvation = -4003.109474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.93989 -41.87162 -40.33994 -38.73786 -36.54749 -36.28984 -33.51072 -32.59101 -31.28731 -29.95808 -29.66096 -28.38356 -28.04167 -25.36464 -24.08761 -23.84354 -22.53184 -22.13041 -20.94446 -20.02391 -18.94745 -18.40277 -18.05586 -17.56416 -17.39220 -17.00141 -16.63916 -16.43505 -16.05574 -15.59796 -15.34358 -15.04454 -14.88382 -14.84778 -14.56121 -14.39254 -14.18962 -13.89943 -13.65268 -13.45273 -13.26761 -12.98408 -12.97632 -12.81980 -12.63406 -12.47393 -12.36370 -12.22159 -12.15365 -12.11707 -12.06290 -11.84149 -11.81660 -11.41746 -10.86067 -10.62407 -9.93123 -9.65186 -9.47136 -8.76681 -7.86479 -5.34534 0.06738 0.22851 1.47151 1.48931 1.56853 1.57547 1.93947 2.49725 2.57557 3.06617 3.28001 3.33357 3.47715 3.55771 3.61562 3.93102 3.94369 3.98710 4.07127 4.11992 4.22600 4.24352 4.27179 4.36947 4.47015 4.59389 4.66007 4.71687 4.76136 4.80880 4.87377 4.92269 5.01027 5.03452 5.06030 5.10412 5.18160 5.23473 5.24868 5.27709 5.34069 5.43724 5.51498 5.62185 5.71247 5.87832 6.32827 6.57995 7.12574 7.15309 7.83405 8.27732 9.18184 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002356 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.513238 B =11882.594994 C =12022.425688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.069 0.931 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.107 3.893 15 N -0.612 5.612 16 C 0.532 3.468 17 O -0.584 6.584 18 C -0.059 4.059 19 H 0.130 0.870 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.060 4.060 23 C -0.152 4.152 24 C 0.085 3.915 25 F -0.146 7.146 26 C -0.160 4.160 27 C -0.077 4.077 28 C -0.103 4.103 29 C 0.097 3.903 30 H 0.004 0.996 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.144 0.856 45 H 0.049 0.951 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -24.106 -1.044 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.324 5.324 3 C -0.397 4.397 4 H 0.087 0.913 5 C -0.243 4.243 6 N -0.581 5.581 7 Si 0.797 3.203 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.193 1.193 11 C 0.057 3.943 12 H 0.091 0.909 13 C -0.181 4.181 14 C -0.014 4.014 15 N -0.345 5.345 16 C 0.322 3.678 17 O -0.464 6.464 18 C -0.080 4.080 19 H 0.148 0.852 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.060 4.060 23 C -0.171 4.171 24 C 0.066 3.934 25 F -0.124 7.124 26 C -0.178 4.178 27 C -0.095 4.095 28 C -0.104 4.104 29 C -0.029 4.029 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.067 0.933 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.021 -23.931 -1.666 24.509 hybrid contribution -0.230 1.341 -0.661 1.513 sum 4.791 -22.589 -2.327 23.209 Atomic orbital electron populations 1.20502 0.82700 0.96693 0.96788 1.43961 1.02035 1.00921 1.85463 1.19526 0.99230 0.86959 1.33969 0.91319 1.25763 0.98459 1.01810 0.98238 1.70199 1.19552 1.27968 1.40349 0.85252 0.78515 0.79890 0.76674 1.21628 1.21936 1.19324 1.21534 0.95772 0.84874 0.92095 0.90857 1.23028 1.02065 0.93705 0.99323 1.22247 1.03615 0.97698 0.77884 1.48558 1.68717 1.08343 1.08851 1.20685 0.75410 0.86544 0.85153 1.90690 1.52482 1.85172 1.18078 1.20811 1.01335 0.87460 0.98404 0.85176 1.22344 0.90524 1.02494 0.98384 1.21163 0.94678 1.00121 0.96044 1.20622 0.96997 0.94098 0.94314 1.20709 0.96801 1.00142 0.99449 1.17719 0.94986 0.91106 0.89603 1.91477 1.96920 1.63527 1.60525 1.21209 0.98724 0.99375 0.98523 1.20711 0.97284 0.95652 0.95860 1.20339 0.93850 0.97342 0.98856 1.22589 0.99726 0.81352 0.99209 0.97736 0.95329 0.96181 0.94129 0.89651 0.91715 0.88869 0.88363 0.86141 0.89790 0.87377 0.90946 0.83409 0.82867 0.83852 0.93259 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.52 7.71 127.77 0.99 9.51 16 2 N -0.60 -28.97 2.96 -695.02 -2.06 -31.03 16 3 C -0.27 -14.25 9.61 84.03 0.81 -13.45 16 4 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 5 C -0.05 -2.58 5.10 84.86 0.43 -2.14 16 6 N -0.93 -53.61 10.67 21.65 0.23 -53.38 16 7 Si 0.97 44.25 29.57 68.60 2.03 46.28 16 8 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 C 0.17 6.28 3.55 46.38 0.16 6.44 16 12 H 0.07 2.81 7.96 -2.39 -0.02 2.80 16 13 C -0.14 -4.13 6.50 31.79 0.21 -3.92 16 14 C 0.11 2.23 6.20 86.73 0.54 2.76 16 15 N -0.61 -17.08 3.33 -811.76 -2.70 -19.78 16 16 C 0.53 15.01 6.82 87.66 0.60 15.60 16 17 O -0.58 -22.08 16.63 -3.04 -0.05 -22.13 16 18 C -0.06 -1.10 2.82 -11.62 -0.03 -1.13 16 19 H 0.13 1.67 7.13 -2.39 -0.02 1.65 16 20 C -0.10 -1.34 6.58 31.51 0.21 -1.14 16 21 C -0.08 -1.32 6.76 30.52 0.21 -1.12 16 22 C -0.06 -1.22 6.14 -19.60 -0.12 -1.34 16 23 C -0.15 -3.07 10.02 22.34 0.22 -2.84 16 24 C 0.08 1.83 7.30 22.35 0.16 1.99 16 25 F -0.15 -3.24 17.27 44.97 0.78 -2.47 16 26 C -0.16 -3.16 10.03 22.29 0.22 -2.93 16 27 C -0.08 -1.55 10.04 22.29 0.22 -1.33 16 28 C -0.10 -2.18 4.93 -19.58 -0.10 -2.28 16 29 C 0.10 3.46 6.51 86.86 0.57 4.03 16 30 H 0.00 0.22 7.62 -2.39 -0.02 0.20 16 31 H 0.03 1.52 6.72 -2.39 -0.02 1.50 16 32 H 0.02 0.84 6.37 -2.39 -0.02 0.83 16 33 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 2.07 6.91 -2.39 -0.02 2.06 16 36 H 0.09 1.45 7.76 -2.39 -0.02 1.43 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.18 7.90 -2.39 -0.02 1.16 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.05 1.96 7.99 -2.39 -0.02 1.94 16 46 H 0.05 2.05 6.34 -2.39 -0.02 2.04 16 Total: -1.00 -69.99 372.13 4.51 -65.47 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.99 Total: 10.32 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.30 Total: 6.71 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -4.52 Total: -104.19 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.99 4.51 -65.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971953355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.749 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds