Wall clock time and date at job start Tue Mar 31 2020 16:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99623 * 203.57920 * 3 2 1 5 5 C 1.38811 * 120.00039 * 23.57259 * 3 2 1 6 6 N 1.31619 * 120.00048 * 15.87211 * 5 3 2 7 7 Si 1.86800 * 120.00111 * 195.86695 * 5 3 2 8 8 H 1.48497 * 109.46868 * 59.99906 * 7 5 3 9 9 H 1.48497 * 109.47292 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47015 * 300.00151 * 7 5 3 11 11 C 1.46498 * 120.00033 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88698 * 183.88133 * 11 2 1 13 13 C 1.55153 * 111.04222 * 307.78813 * 11 2 1 14 14 C 1.54339 * 103.02115 * 153.39359 * 13 11 2 15 15 N 1.47023 * 107.26611 * 338.14435 * 14 13 11 16 16 C 1.34774 * 125.64814 * 178.85496 * 15 14 13 17 17 O 1.21285 * 119.99613 * 184.64375 * 16 15 14 18 18 C 1.50700 * 119.99919 * 4.63428 * 16 15 14 19 19 C 1.50698 * 115.55070 * 65.63168 * 18 16 15 20 20 C 1.38265 * 119.98810 * 218.79488 * 19 18 16 21 21 C 1.38222 * 120.04852 * 180.25075 * 20 19 18 22 22 C 1.38212 * 120.02893 * 359.49510 * 21 20 19 23 23 C 1.38441 * 119.97595 * 0.25288 * 22 21 20 24 24 F 1.35100 * 120.02872 * 179.97438 * 23 22 21 25 25 C 1.38182 * 119.98490 * 38.54238 * 19 18 16 26 26 C 1.52999 * 117.51847 * 211.33200 * 18 16 15 27 27 C 1.53000 * 60.00143 * 107.48110 * 26 18 16 28 28 C 1.47429 * 108.70105 * 358.57910 * 15 14 13 29 29 H 1.09000 * 109.47209 * 275.50010 * 1 2 3 30 30 H 1.08993 * 109.47151 * 35.50693 * 1 2 3 31 31 H 1.08998 * 109.46859 * 155.50648 * 1 2 3 32 32 H 0.96996 * 120.00537 * 180.02562 * 6 5 3 33 33 H 1.08999 * 110.72266 * 271.95426 * 13 11 2 34 34 H 1.09007 * 110.71974 * 35.22788 * 13 11 2 35 35 H 1.08999 * 109.99257 * 218.66807 * 14 13 11 36 36 H 1.08996 * 109.77928 * 97.49714 * 14 13 11 37 37 H 1.07996 * 119.97397 * 0.02953 * 20 19 18 38 38 H 1.08004 * 119.98704 * 179.76564 * 21 20 19 39 39 H 1.08003 * 120.01554 * 180.23021 * 22 21 20 40 40 H 1.07991 * 120.01326 * 359.97438 * 25 19 18 41 41 H 1.08996 * 117.50231 * 214.97534 * 26 18 16 42 42 H 1.09003 * 117.50038 * 359.97438 * 26 18 16 43 43 H 1.08999 * 117.49807 * 252.51270 * 27 26 18 44 44 H 1.08997 * 117.51383 * 107.48280 * 27 26 18 45 45 H 1.09004 * 110.36041 * 143.19188 * 28 15 14 46 46 H 1.08998 * 110.37144 * 265.40774 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1620 1.2249 -0.3741 5 6 1.5425 2.3379 0.4807 6 7 0.4527 2.2507 1.2136 7 14 2.2721 4.0120 0.0877 8 1 2.2979 4.2075 -1.3841 9 1 1.4429 5.0728 0.7140 10 1 3.6560 4.0865 0.6212 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.7077 -2.1943 1.1454 14 6 2.0205 -3.6070 0.6083 15 7 2.1187 -3.5057 -0.8551 16 6 2.4023 -4.5205 -1.6955 17 8 2.5409 -4.3053 -2.8810 18 6 2.5475 -5.9224 -1.1620 19 6 1.2943 -6.5330 -0.5896 20 6 1.3649 -7.3194 0.5455 21 6 0.2169 -7.8843 1.0686 22 6 -1.0044 -7.6552 0.4635 23 6 -1.0771 -6.8637 -0.6700 24 9 -2.2703 -6.6395 -1.2626 25 6 0.0744 -6.3025 -1.1963 26 6 3.5225 -6.8556 -1.8827 27 6 3.8782 -6.2939 -0.5047 28 6 1.8490 -2.1116 -1.2516 29 1 -0.3633 0.0985 1.0229 30 1 -0.3633 0.8365 -0.5968 31 1 -0.3633 -0.9352 -0.4261 32 1 0.0282 3.0556 1.5493 33 1 2.2604 -1.9972 2.0639 34 1 0.6360 -2.0753 1.3057 35 1 1.2194 -4.2946 0.8794 36 1 2.9672 -3.9568 1.0200 37 1 2.3181 -7.4952 1.0216 38 1 0.2737 -8.5015 1.9531 39 1 -1.9017 -8.0937 0.8746 40 1 0.0189 -5.6846 -2.0802 41 1 3.2575 -7.9111 -1.9429 42 1 4.0589 -6.4558 -2.7432 43 1 4.6488 -5.5244 -0.4585 44 1 3.8473 -6.9797 0.3419 45 1 2.4844 -1.8260 -2.0900 46 1 0.7982 -1.9881 -1.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972478899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:55 Heat of formation + Delta-G solvation = 6.593961 kcal Electronic energy + Delta-G solvation = -28992.412697 eV Core-core repulsion = 24991.355078 eV Total energy + Delta-G solvation = -4001.057619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -49.04659 -40.73256 -39.03253 -37.68833 -36.30032 -34.80907 -31.69837 -31.30742 -30.45299 -29.78359 -28.11559 -26.07667 -25.27833 -23.59330 -23.35141 -22.40587 -22.27021 -21.36885 -19.34197 -18.97287 -17.77815 -17.05520 -16.88042 -16.46116 -16.11838 -15.87647 -15.72551 -15.57732 -15.04321 -14.48280 -14.19775 -13.98631 -13.46421 -13.42937 -13.30130 -13.29369 -12.80025 -12.56812 -12.49429 -12.34873 -12.28609 -11.92256 -11.61583 -11.53431 -11.32890 -10.98624 -10.90430 -10.84008 -10.76441 -10.53193 -10.51718 -10.28587 -9.90656 -9.89423 -9.67277 -9.15481 -8.87661 -8.60983 -8.36374 -6.82009 -5.78605 -3.26106 0.84334 0.93418 2.59875 3.03990 3.17500 3.36969 3.42805 3.44555 3.64230 3.93240 4.26844 4.38964 4.45857 4.50064 4.63019 4.69347 4.78776 4.83426 5.03290 5.13023 5.20100 5.32594 5.34335 5.38024 5.53553 5.54016 5.61292 5.65699 5.76891 5.77248 5.84967 5.87949 5.90366 6.01038 6.02640 6.16816 6.27416 6.37688 6.52838 6.60692 6.61953 6.73731 6.85937 7.28621 7.65466 7.73811 7.76108 8.27337 8.33998 9.16069 9.78973 10.28010 11.25718 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003153 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.430944 B = 8877.992101 C = 9663.937667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.069 0.931 5 C 0.008 3.992 6 N -0.902 5.902 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.175 3.825 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.106 3.894 15 N -0.602 5.602 16 C 0.563 3.437 17 O -0.541 6.541 18 C -0.121 4.121 19 C -0.007 4.007 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.157 4.157 23 C 0.106 3.894 24 F -0.138 7.138 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.154 4.154 28 C 0.084 3.916 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.003 0.997 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -22.833 1.371 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.546 5.546 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.064 3.936 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.018 4.018 15 N -0.335 5.335 16 C 0.350 3.650 17 O -0.419 6.419 18 C -0.124 4.124 19 C -0.008 4.008 20 C -0.145 4.145 21 C -0.104 4.104 22 C -0.176 4.176 23 C 0.086 3.914 24 F -0.116 7.116 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.191 4.191 28 C -0.041 4.041 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.962 -22.555 0.751 22.653 hybrid contribution -0.144 1.033 -0.156 1.055 sum 1.818 -21.522 0.595 21.607 Atomic orbital electron populations 1.20804 0.82556 0.95593 0.99726 1.43795 1.01779 0.99860 1.84920 1.19156 0.98991 0.85329 1.35855 0.91324 1.25005 0.98117 0.98561 0.97478 1.70061 1.21562 1.27617 1.35334 0.86336 0.78355 0.83688 0.78167 1.20969 1.21610 1.20847 1.21392 0.96404 0.85833 0.89965 0.90355 1.23223 1.02816 0.92611 1.00445 1.22060 1.00685 0.99216 0.79814 1.48359 1.68043 1.09460 1.07611 1.18833 0.76786 0.84043 0.85306 1.90703 1.51307 1.84114 1.15731 1.20075 0.90755 0.94248 1.07352 1.18524 0.91622 0.96223 0.94420 1.21096 0.99297 0.98337 0.95803 1.20958 0.91319 0.98733 0.99420 1.21172 0.99736 1.00737 0.95931 1.17639 0.80789 0.99138 0.93798 1.91519 1.43782 1.93205 1.83131 1.20996 0.91136 1.01993 1.01888 1.23080 0.99174 0.98355 0.96306 1.23192 0.95204 1.03553 0.97135 1.23074 1.01232 0.79063 1.00682 0.94651 0.94222 0.97880 0.93591 0.90443 0.90592 0.92132 0.91832 0.84894 0.84738 0.84678 0.84840 0.87683 0.87243 0.87664 0.87317 0.90866 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 7.59 59.85 0.45 4.22 16 2 N -0.58 -14.13 2.95 -171.04 -0.51 -14.64 16 3 C -0.26 -7.08 9.58 -15.06 -0.14 -7.23 16 4 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 5 C 0.01 0.21 5.04 -17.43 -0.09 0.12 16 6 N -0.90 -25.69 10.91 55.49 0.61 -25.09 16 7 Si 0.90 21.52 29.58 -169.99 -5.03 16.50 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.17 3.45 3.53 -65.78 -0.23 3.21 16 12 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 13 C -0.15 -2.51 6.50 -24.89 -0.16 -2.67 16 14 C 0.11 1.45 6.32 -3.05 -0.02 1.43 16 15 N -0.60 -9.58 3.33 -170.50 -0.57 -10.15 16 16 C 0.56 8.89 6.22 -10.99 -0.07 8.83 16 17 O -0.54 -10.46 16.94 5.55 0.09 -10.37 16 18 C -0.12 -1.40 1.64 -156.81 -0.26 -1.66 16 19 C -0.01 -0.08 4.31 -104.63 -0.45 -0.53 16 20 C -0.13 -1.06 9.39 -39.58 -0.37 -1.44 16 21 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 22 C -0.16 -1.44 10.03 -39.52 -0.40 -1.84 16 23 C 0.11 1.25 7.30 -39.42 -0.29 0.96 16 24 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 25 C -0.14 -1.77 9.31 -39.51 -0.37 -2.14 16 26 C -0.13 -1.26 9.76 -26.73 -0.26 -1.52 16 27 C -0.15 -1.32 9.57 -26.73 -0.26 -1.57 16 28 C 0.08 1.55 6.49 -2.52 -0.02 1.54 16 29 H 0.04 0.91 7.30 -51.93 -0.38 0.53 16 30 H 0.04 1.02 7.48 -51.93 -0.39 0.64 16 31 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.36 6.99 -51.92 -0.36 1.00 16 35 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.13 0.80 5.95 -52.49 -0.31 0.49 16 38 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.13 1.89 7.60 -52.49 -0.40 1.49 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.11 1.16 8.00 -51.93 -0.42 0.75 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.11 0.66 6.10 -51.93 -0.32 0.34 16 45 H 0.07 1.44 7.99 -51.93 -0.41 1.03 16 46 H 0.07 1.34 6.44 -51.93 -0.33 1.00 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.22 375.27 -9.56 -40.79 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.53 Total: 0.41 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.32 Total: -1.35 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.47 Total: -49.87 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -9.56 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972478899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.379 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds