Wall clock time and date at job start Tue Mar 31 2020 16:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99623 * 203.57920 * 3 2 1 5 5 C 1.38811 * 120.00039 * 23.57259 * 3 2 1 6 6 N 1.31619 * 120.00048 * 15.87211 * 5 3 2 7 7 Si 1.86800 * 120.00111 * 195.86695 * 5 3 2 8 8 H 1.48497 * 109.46868 * 59.99906 * 7 5 3 9 9 H 1.48497 * 109.47292 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47015 * 300.00151 * 7 5 3 11 11 C 1.46498 * 120.00033 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88698 * 183.88133 * 11 2 1 13 13 C 1.55153 * 111.04222 * 307.78813 * 11 2 1 14 14 C 1.54339 * 103.02115 * 153.39359 * 13 11 2 15 15 N 1.47023 * 107.26611 * 338.14435 * 14 13 11 16 16 C 1.34774 * 125.64814 * 178.85496 * 15 14 13 17 17 O 1.21285 * 119.99613 * 184.64375 * 16 15 14 18 18 C 1.50700 * 119.99919 * 4.63428 * 16 15 14 19 19 C 1.50698 * 115.55070 * 65.63168 * 18 16 15 20 20 C 1.38265 * 119.98810 * 218.79488 * 19 18 16 21 21 C 1.38222 * 120.04852 * 180.25075 * 20 19 18 22 22 C 1.38212 * 120.02893 * 359.49510 * 21 20 19 23 23 C 1.38441 * 119.97595 * 0.25288 * 22 21 20 24 24 F 1.35100 * 120.02872 * 179.97438 * 23 22 21 25 25 C 1.38182 * 119.98490 * 38.54238 * 19 18 16 26 26 C 1.52999 * 117.51847 * 211.33200 * 18 16 15 27 27 C 1.53000 * 60.00143 * 107.48110 * 26 18 16 28 28 C 1.47429 * 108.70105 * 358.57910 * 15 14 13 29 29 H 1.09000 * 109.47209 * 275.50010 * 1 2 3 30 30 H 1.08993 * 109.47151 * 35.50693 * 1 2 3 31 31 H 1.08998 * 109.46859 * 155.50648 * 1 2 3 32 32 H 0.96996 * 120.00537 * 180.02562 * 6 5 3 33 33 H 1.08999 * 110.72266 * 271.95426 * 13 11 2 34 34 H 1.09007 * 110.71974 * 35.22788 * 13 11 2 35 35 H 1.08999 * 109.99257 * 218.66807 * 14 13 11 36 36 H 1.08996 * 109.77928 * 97.49714 * 14 13 11 37 37 H 1.07996 * 119.97397 * 0.02953 * 20 19 18 38 38 H 1.08004 * 119.98704 * 179.76564 * 21 20 19 39 39 H 1.08003 * 120.01554 * 180.23021 * 22 21 20 40 40 H 1.07991 * 120.01326 * 359.97438 * 25 19 18 41 41 H 1.08996 * 117.50231 * 214.97534 * 26 18 16 42 42 H 1.09003 * 117.50038 * 359.97438 * 26 18 16 43 43 H 1.08999 * 117.49807 * 252.51270 * 27 26 18 44 44 H 1.08997 * 117.51383 * 107.48280 * 27 26 18 45 45 H 1.09004 * 110.36041 * 143.19188 * 28 15 14 46 46 H 1.08998 * 110.37144 * 265.40774 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1620 1.2249 -0.3741 5 6 1.5425 2.3379 0.4807 6 7 0.4527 2.2507 1.2136 7 14 2.2721 4.0120 0.0877 8 1 2.2979 4.2075 -1.3841 9 1 1.4429 5.0728 0.7140 10 1 3.6560 4.0865 0.6212 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.7077 -2.1943 1.1454 14 6 2.0205 -3.6070 0.6083 15 7 2.1187 -3.5057 -0.8551 16 6 2.4023 -4.5205 -1.6955 17 8 2.5409 -4.3053 -2.8810 18 6 2.5475 -5.9224 -1.1620 19 6 1.2943 -6.5330 -0.5896 20 6 1.3649 -7.3194 0.5455 21 6 0.2169 -7.8843 1.0686 22 6 -1.0044 -7.6552 0.4635 23 6 -1.0771 -6.8637 -0.6700 24 9 -2.2703 -6.6395 -1.2626 25 6 0.0744 -6.3025 -1.1963 26 6 3.5225 -6.8556 -1.8827 27 6 3.8782 -6.2939 -0.5047 28 6 1.8490 -2.1116 -1.2516 29 1 -0.3633 0.0985 1.0229 30 1 -0.3633 0.8365 -0.5968 31 1 -0.3633 -0.9352 -0.4261 32 1 0.0282 3.0556 1.5493 33 1 2.2604 -1.9972 2.0639 34 1 0.6360 -2.0753 1.3057 35 1 1.2194 -4.2946 0.8794 36 1 2.9672 -3.9568 1.0200 37 1 2.3181 -7.4952 1.0216 38 1 0.2737 -8.5015 1.9531 39 1 -1.9017 -8.0937 0.8746 40 1 0.0189 -5.6846 -2.0802 41 1 3.2575 -7.9111 -1.9429 42 1 4.0589 -6.4558 -2.7432 43 1 4.6488 -5.5244 -0.4585 44 1 3.8473 -6.9797 0.3419 45 1 2.4844 -1.8260 -2.0900 46 1 0.7982 -1.9881 -1.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972478899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:48 Heat of formation + Delta-G solvation = -10.289363 kcal Electronic energy + Delta-G solvation = -28993.144813 eV Core-core repulsion = 24991.355078 eV Total energy + Delta-G solvation = -4001.789735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.92 seconds Orbital eigenvalues (eV) -49.95933 -41.77205 -40.08022 -39.00914 -37.26633 -36.57919 -33.48247 -32.10778 -31.32269 -31.17577 -29.62360 -28.09005 -26.46251 -24.85420 -24.17630 -23.80492 -23.08405 -22.35481 -20.99427 -20.02742 -18.97895 -18.76749 -17.84157 -17.54691 -17.23923 -17.00474 -16.71020 -16.59120 -16.47495 -15.84152 -15.52259 -15.07203 -14.91540 -14.68744 -14.50144 -14.38521 -14.24622 -14.08008 -13.70508 -13.46911 -13.40584 -12.97425 -12.91312 -12.83307 -12.52053 -12.44923 -12.40325 -12.22752 -12.19099 -12.14887 -11.88111 -11.68636 -11.61268 -11.46411 -10.90163 -10.65939 -9.92230 -9.73599 -9.61435 -8.81747 -7.86305 -5.35950 0.11949 0.18904 1.41823 1.46068 1.49284 1.55254 1.83915 2.43892 2.49810 2.84991 3.15698 3.24353 3.39089 3.51223 3.52232 3.74175 3.86906 3.90424 3.92234 4.01087 4.09777 4.15434 4.18045 4.28593 4.40055 4.42123 4.61303 4.65593 4.71465 4.73781 4.84600 4.88460 4.94802 4.96333 5.07229 5.14986 5.15879 5.17836 5.19006 5.24417 5.37355 5.37619 5.45361 5.61828 5.64380 5.90126 6.28814 6.48553 7.02172 7.10432 7.80297 8.25515 9.16279 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003153 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.430944 B = 8877.992101 C = 9663.937667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.599 5.599 3 C -0.274 4.274 4 H 0.070 0.930 5 C -0.043 4.043 6 N -0.931 5.931 7 Si 0.966 3.034 8 H -0.283 1.283 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.170 3.830 12 H 0.077 0.923 13 C -0.140 4.140 14 C 0.116 3.884 15 N -0.603 5.603 16 C 0.559 3.441 17 O -0.589 6.589 18 C -0.139 4.139 19 C -0.013 4.013 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.154 4.154 23 C 0.077 3.923 24 F -0.156 7.156 25 C -0.168 4.168 26 C -0.133 4.133 27 C -0.125 4.125 28 C 0.095 3.905 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.025 0.975 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.154 0.846 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -25.876 3.979 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.321 5.321 3 C -0.404 4.404 4 H 0.088 0.912 5 C -0.239 4.239 6 N -0.576 5.576 7 Si 0.794 3.206 8 H -0.210 1.210 9 H -0.219 1.219 10 H -0.197 1.197 11 C 0.061 3.939 12 H 0.095 0.905 13 C -0.180 4.180 14 C -0.006 4.006 15 N -0.335 5.335 16 C 0.349 3.651 17 O -0.470 6.470 18 C -0.142 4.142 19 C -0.013 4.013 20 C -0.132 4.132 21 C -0.090 4.090 22 C -0.173 4.173 23 C 0.058 3.942 24 F -0.135 7.135 25 C -0.187 4.187 26 C -0.170 4.170 27 C -0.161 4.161 28 C -0.030 4.030 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.187 0.813 38 H 0.193 0.807 39 H 0.172 0.828 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.166 0.834 45 H 0.072 0.928 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.827 -25.641 3.373 26.144 hybrid contribution -0.700 1.908 -1.029 2.278 sum 3.127 -23.733 2.343 24.053 Atomic orbital electron populations 1.20484 0.82887 0.95397 0.98002 1.43940 1.01863 1.00931 1.85324 1.19472 0.99154 0.86637 1.35113 0.91207 1.25719 0.98768 1.01667 0.97752 1.70203 1.22867 1.27979 1.36557 0.85366 0.77942 0.79630 0.77646 1.20986 1.21903 1.19743 1.21501 0.95945 0.84788 0.91694 0.90462 1.23060 1.01874 0.93498 0.99579 1.22118 1.03018 0.97452 0.78016 1.48413 1.68032 1.08257 1.08806 1.19684 0.75194 0.85606 0.84653 1.90670 1.53255 1.85127 1.17911 1.19945 0.92752 0.91535 1.09965 1.18521 0.90157 0.97200 0.95437 1.21471 1.01171 0.96451 0.94062 1.21451 0.90023 0.97738 0.99824 1.21500 1.01612 0.99565 0.94609 1.17968 0.80003 1.00877 0.95306 1.91465 1.44710 1.93576 1.83715 1.20889 0.92839 1.03181 1.01772 1.23179 0.98114 0.99020 0.96726 1.23419 0.92065 1.03166 0.97467 1.22671 0.99632 0.81171 0.99575 0.96639 0.97128 0.95701 0.94099 0.89261 0.92065 0.90586 0.88389 0.81293 0.80666 0.82793 0.88393 0.85424 0.89127 0.87840 0.83362 0.92792 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.80 7.59 127.77 0.97 9.77 16 2 N -0.60 -29.74 2.95 -695.03 -2.05 -31.79 16 3 C -0.27 -14.94 9.58 84.03 0.81 -14.14 16 4 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 5 C -0.04 -2.38 5.04 84.86 0.43 -1.95 16 6 N -0.93 -54.29 10.91 21.65 0.24 -54.06 16 7 Si 0.97 44.82 29.58 68.60 2.03 46.85 16 8 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.17 6.74 3.53 46.38 0.16 6.90 16 12 H 0.08 3.07 7.96 -2.39 -0.02 3.05 16 13 C -0.14 -4.49 6.50 31.79 0.21 -4.28 16 14 C 0.12 2.90 6.32 86.73 0.55 3.44 16 15 N -0.60 -19.01 3.33 -811.74 -2.70 -21.71 16 16 C 0.56 17.73 6.22 87.66 0.55 18.27 16 17 O -0.59 -23.91 16.94 -3.04 -0.05 -23.97 16 18 C -0.14 -2.93 1.64 -53.67 -0.09 -3.01 16 19 C -0.01 -0.24 4.31 -19.87 -0.09 -0.33 16 20 C -0.11 -1.30 9.39 22.27 0.21 -1.09 16 21 C -0.07 -0.73 10.04 22.26 0.22 -0.51 16 22 C -0.15 -2.39 10.03 22.31 0.22 -2.16 16 23 C 0.08 1.81 7.30 22.38 0.16 1.97 16 24 F -0.16 -4.27 17.27 44.97 0.78 -3.49 16 25 C -0.17 -4.26 9.31 22.32 0.21 -4.05 16 26 C -0.13 -2.23 9.76 30.59 0.30 -1.94 16 27 C -0.12 -1.57 9.57 30.60 0.29 -1.27 16 28 C 0.09 3.65 6.49 86.86 0.56 4.21 16 29 H 0.02 0.82 7.30 -2.39 -0.02 0.81 16 30 H 0.01 0.55 7.48 -2.39 -0.02 0.53 16 31 H 0.02 1.09 6.37 -2.39 -0.02 1.08 16 32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.06 2.15 6.99 -2.38 -0.02 2.14 16 35 H 0.08 1.73 7.30 -2.39 -0.02 1.72 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.17 0.70 5.95 -2.91 -0.02 0.69 16 38 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.10 3.08 7.60 -2.92 -0.02 3.06 16 41 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.15 0.70 6.10 -2.39 -0.01 0.69 16 45 H 0.05 2.25 7.99 -2.39 -0.02 2.23 16 46 H 0.05 2.08 6.44 -2.39 -0.02 2.06 16 Total: -1.00 -73.33 375.27 4.90 -68.42 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.99 Total: 9.90 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.68 Total: 9.84 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.52 Total: -107.56 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.33 4.90 -68.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972478899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.132 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.92 seconds