Wall clock time and date at job start Tue Mar 31 2020 16:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00092 * 2 1 4 4 H 1.08001 * 119.99551 * 203.00015 * 3 2 1 5 5 C 1.38811 * 119.99997 * 22.99336 * 3 2 1 6 6 N 1.31620 * 119.99687 * 11.64270 * 5 3 2 7 7 Si 1.86796 * 120.00033 * 191.63551 * 5 3 2 8 8 H 1.48503 * 109.46905 * 60.00726 * 7 5 3 9 9 H 1.48502 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47276 * 300.00498 * 7 5 3 11 11 C 1.46500 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46006 * 60.02879 * 11 2 1 13 13 C 1.53192 * 109.31224 * 178.60114 * 12 11 2 14 14 N 1.46926 * 108.76874 * 54.65035 * 13 12 11 15 15 C 1.34775 * 120.63155 * 126.40170 * 14 13 12 16 16 O 1.21282 * 120.00100 * 179.97438 * 15 14 13 17 17 C 1.50693 * 120.00138 * 359.97438 * 15 14 13 18 18 H 1.09005 * 112.82853 * 311.10226 * 17 15 14 19 19 C 1.53517 * 113.58763 * 179.97438 * 17 15 14 20 20 C 1.51619 * 87.24991 * 245.40450 * 19 17 15 21 21 C 1.38397 * 147.49028 * 180.02562 * 20 19 17 22 22 C 1.38047 * 120.35506 * 179.97438 * 21 20 19 23 23 C 1.38463 * 119.93408 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05180 * 179.97438 * 23 22 21 25 25 C 1.38323 * 119.90385 * 359.97438 * 23 22 21 26 26 C 1.38335 * 120.29876 * 359.97438 * 25 23 22 27 27 C 1.46933 * 118.73751 * 306.38824 * 14 13 12 28 28 C 1.53030 * 109.46145 * 299.96906 * 11 2 1 29 29 H 1.09003 * 109.46837 * 273.84323 * 1 2 3 30 30 H 1.09003 * 109.47393 * 33.84183 * 1 2 3 31 31 H 1.09003 * 109.47261 * 153.84544 * 1 2 3 32 32 H 0.97004 * 119.99509 * 179.97438 * 6 5 3 33 33 H 1.09009 * 109.45971 * 179.97438 * 11 2 1 34 34 H 1.09008 * 109.49527 * 298.56050 * 12 11 2 35 35 H 1.08994 * 109.50212 * 58.66191 * 12 11 2 36 36 H 1.09001 * 109.59697 * 294.86480 * 13 12 11 37 37 H 1.09006 * 109.70259 * 174.49990 * 13 12 11 38 38 H 1.08996 * 113.58786 * 359.97438 * 19 17 15 39 39 H 1.09002 * 113.58651 * 130.73476 * 19 17 15 40 40 H 1.08003 * 119.81704 * 0.02562 * 21 20 19 41 41 H 1.08007 * 120.03313 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.85171 * 180.02562 * 25 23 22 43 43 H 1.09000 * 109.58247 * 293.81831 * 27 14 13 44 44 H 1.08999 * 109.58236 * 173.39417 * 27 14 13 45 45 H 1.09003 * 109.50038 * 301.33532 * 28 11 2 46 46 H 1.08998 * 109.50192 * 61.43603 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2230 -0.3655 5 6 1.5384 2.3403 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0045 0.1757 8 1 2.4682 4.2382 -1.2847 9 1 1.4891 5.0697 0.7725 10 1 3.6786 4.0285 0.8062 11 6 2.1974 -1.2688 -0.0006 12 6 1.8280 -2.0702 -1.2509 13 6 2.6219 -3.3803 -1.2659 14 7 2.3849 -4.0910 -0.0020 15 6 1.9586 -5.3696 -0.0026 16 8 1.7671 -5.9455 1.0474 17 6 1.7200 -6.0836 -1.3080 18 1 1.1156 -5.5018 -2.0040 19 6 1.2381 -7.5312 -1.1373 20 6 2.5449 -7.9640 -1.7727 21 6 3.3478 -9.0095 -2.1942 22 6 4.5783 -8.7572 -2.7668 23 6 5.0137 -7.4520 -2.9217 24 9 6.2178 -7.2023 -3.4812 25 6 4.2141 -6.4039 -2.5027 26 6 2.9800 -6.6535 -1.9296 27 6 2.6217 -3.3815 1.2627 28 6 1.8281 -2.0712 1.2490 29 1 -0.3633 0.0689 1.0254 30 1 -0.3634 0.8536 -0.5723 31 1 -0.3634 -0.9225 -0.4530 32 1 -0.0291 3.0690 1.4505 33 1 3.2691 -1.0694 -0.0009 34 1 0.7607 -2.2914 -1.2391 35 1 2.0696 -1.4885 -2.1405 36 1 3.6849 -3.1624 -1.3688 37 1 2.2932 -3.9996 -2.1005 38 1 1.1373 -7.8374 -0.0961 39 1 0.3597 -7.7720 -1.7361 40 1 3.0093 -10.0282 -2.0754 41 1 5.2008 -9.5771 -3.0935 42 1 4.5544 -5.3862 -2.6243 43 1 3.6848 -3.1638 1.3659 44 1 2.2907 -4.0006 2.0965 45 1 2.0698 -1.4903 2.1391 46 1 0.7609 -2.2925 1.2372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985598107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:31 Heat of formation + Delta-G solvation = 10.947715 kcal Electronic energy + Delta-G solvation = -28582.786516 eV Core-core repulsion = 24581.917690 eV Total energy + Delta-G solvation = -4000.868827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -49.15778 -41.30223 -39.42647 -37.56152 -35.27097 -35.08584 -32.25148 -31.27455 -30.83059 -29.78994 -27.83326 -26.03943 -25.82574 -24.54460 -23.09367 -22.63947 -21.96118 -21.02337 -19.63177 -18.59212 -17.77218 -17.26542 -16.84239 -16.76790 -16.00990 -15.77003 -15.46172 -15.15620 -15.04908 -14.38388 -14.26716 -13.96842 -13.84289 -13.64849 -13.58650 -13.19245 -12.87750 -12.69791 -12.48336 -12.28771 -12.09247 -11.97530 -11.72975 -11.57069 -11.46125 -11.00666 -10.90519 -10.87595 -10.77998 -10.41293 -10.28091 -10.17237 -9.97481 -9.86632 -9.62539 -9.25777 -8.75624 -8.59589 -8.50105 -6.76683 -5.73616 -3.20194 0.74468 0.86869 2.47439 2.97715 3.23606 3.37137 3.42845 3.43291 3.59572 3.88830 4.10658 4.20403 4.43730 4.47179 4.61092 4.83884 4.96792 5.06301 5.17113 5.21477 5.30051 5.33986 5.38248 5.44366 5.47570 5.57536 5.60584 5.72223 5.75562 5.78310 5.85364 5.86832 5.99226 6.12305 6.21893 6.28156 6.33612 6.49953 6.53083 6.57361 6.77003 6.94828 6.98069 7.37953 7.44623 7.72184 7.79142 8.13827 8.38942 9.22633 9.85920 10.35288 11.31151 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002673 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.329922 B =10473.724231 C =11331.602806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.180 3.820 12 C -0.148 4.148 13 C 0.108 3.892 14 N -0.599 5.599 15 C 0.531 3.469 16 O -0.541 6.541 17 C -0.067 4.067 18 H 0.126 0.874 19 C -0.054 4.054 20 C -0.126 4.126 21 C -0.069 4.069 22 C -0.146 4.146 23 C 0.098 3.902 24 F -0.137 7.137 25 C -0.120 4.120 26 C -0.093 4.093 27 C 0.113 3.887 28 C -0.144 4.144 29 H 0.027 0.973 30 H 0.042 0.958 31 H -0.003 1.003 32 H 0.253 0.747 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -21.530 -8.341 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.188 4.188 13 C -0.015 4.015 14 N -0.331 5.331 15 C 0.318 3.682 16 O -0.419 6.419 17 C -0.088 4.088 18 H 0.144 0.856 19 C -0.091 4.091 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.164 4.164 23 C 0.078 3.922 24 F -0.116 7.116 25 C -0.139 4.139 26 C -0.094 4.094 27 C -0.009 4.009 28 C -0.184 4.184 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.077 -21.624 -7.726 23.322 hybrid contribution 0.695 1.237 -0.344 1.460 sum 4.772 -20.387 -8.070 22.439 Atomic orbital electron populations 1.20737 0.82754 0.95401 0.99112 1.43938 1.01771 1.00134 1.85877 1.19174 0.98269 0.85550 1.35596 0.91512 1.25031 0.97785 0.98522 0.98266 1.70059 1.18487 1.27279 1.39418 0.86338 0.78506 0.83842 0.77843 1.21111 1.21664 1.20969 1.20272 0.96013 0.86081 0.90544 1.22494 1.00139 0.94643 1.01559 1.21865 1.00542 0.94215 0.84866 1.48128 1.65184 1.11469 1.08320 1.19867 0.76861 0.81549 0.89942 1.90673 1.52338 1.65961 1.32909 1.21602 0.93798 0.97868 0.95487 0.85631 1.21833 0.93741 0.90599 1.02943 1.22307 0.97850 0.93785 0.98644 1.20110 0.92441 0.98895 0.97282 1.21008 0.97481 0.95343 1.02599 1.17315 0.82127 0.93638 0.99075 1.91519 1.42117 1.95115 1.82802 1.20229 0.93455 0.99408 1.00822 1.21521 0.93788 0.96350 0.97726 1.21742 0.99918 0.93832 0.85446 1.22504 0.99984 0.94335 1.01609 0.95482 0.93926 0.98490 0.93709 0.91935 0.91829 0.90675 0.91321 0.90456 0.86947 0.88129 0.85106 0.84267 0.84777 0.91671 0.89559 0.90547 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.03 59.84 0.48 4.43 16 2 N -0.60 -14.26 2.81 -173.44 -0.49 -14.74 16 3 C -0.26 -6.83 9.59 -15.06 -0.14 -6.97 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.91 -26.11 10.64 55.49 0.59 -25.52 16 7 Si 0.90 21.52 29.57 -169.99 -5.03 16.50 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.22 16 12 C -0.15 -2.27 5.32 -26.61 -0.14 -2.41 16 13 C 0.11 1.31 6.33 -3.71 -0.02 1.29 16 14 N -0.60 -8.24 2.97 -172.76 -0.51 -8.75 16 15 C 0.53 7.35 7.24 -10.99 -0.08 7.27 16 16 O -0.54 -9.14 15.12 5.56 0.08 -9.05 16 17 C -0.07 -0.69 2.94 -92.22 -0.27 -0.96 16 18 H 0.13 1.06 7.21 -51.93 -0.37 0.68 16 19 C -0.05 -0.49 7.77 -27.18 -0.21 -0.70 16 20 C -0.13 -1.21 7.49 -103.86 -0.78 -1.99 16 21 C -0.07 -0.58 10.02 -39.59 -0.40 -0.97 16 22 C -0.15 -1.24 10.02 -39.57 -0.40 -1.64 16 23 C 0.10 1.00 7.30 -39.47 -0.29 0.71 16 24 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 25 C -0.12 -1.24 10.01 -39.51 -0.40 -1.64 16 26 C -0.09 -0.97 6.79 -103.88 -0.71 -1.68 16 27 C 0.11 1.69 6.43 -3.71 -0.02 1.67 16 28 C -0.14 -2.54 5.34 -26.62 -0.14 -2.69 16 29 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 30 H 0.04 1.11 7.22 -51.93 -0.37 0.73 16 31 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.20 7.86 -51.92 -0.41 0.79 16 34 H 0.06 1.02 6.72 -51.92 -0.35 0.67 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.76 5.67 -51.93 -0.29 0.47 16 38 H 0.11 1.16 7.04 -51.93 -0.37 0.79 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -31.24 369.32 -10.11 -41.35 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.58 Total: -0.80 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.78 Total: -3.08 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.41 Total: -49.02 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.24 -10.11 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985598107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.294 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds