Wall clock time and date at job start Tue Mar 31 2020 16:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00092 * 2 1 4 4 H 1.08001 * 119.99551 * 203.00015 * 3 2 1 5 5 C 1.38811 * 119.99997 * 22.99336 * 3 2 1 6 6 N 1.31620 * 119.99687 * 11.64270 * 5 3 2 7 7 Si 1.86796 * 120.00033 * 191.63551 * 5 3 2 8 8 H 1.48503 * 109.46905 * 60.00726 * 7 5 3 9 9 H 1.48502 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47276 * 300.00498 * 7 5 3 11 11 C 1.46500 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46006 * 60.02879 * 11 2 1 13 13 C 1.53192 * 109.31224 * 178.60114 * 12 11 2 14 14 N 1.46926 * 108.76874 * 54.65035 * 13 12 11 15 15 C 1.34775 * 120.63155 * 126.40170 * 14 13 12 16 16 O 1.21282 * 120.00100 * 179.97438 * 15 14 13 17 17 C 1.50693 * 120.00138 * 359.97438 * 15 14 13 18 18 H 1.09005 * 112.82853 * 311.10226 * 17 15 14 19 19 C 1.53517 * 113.58763 * 179.97438 * 17 15 14 20 20 C 1.51619 * 87.24991 * 245.40450 * 19 17 15 21 21 C 1.38397 * 147.49028 * 180.02562 * 20 19 17 22 22 C 1.38047 * 120.35506 * 179.97438 * 21 20 19 23 23 C 1.38463 * 119.93408 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05180 * 179.97438 * 23 22 21 25 25 C 1.38323 * 119.90385 * 359.97438 * 23 22 21 26 26 C 1.38335 * 120.29876 * 359.97438 * 25 23 22 27 27 C 1.46933 * 118.73751 * 306.38824 * 14 13 12 28 28 C 1.53030 * 109.46145 * 299.96906 * 11 2 1 29 29 H 1.09003 * 109.46837 * 273.84323 * 1 2 3 30 30 H 1.09003 * 109.47393 * 33.84183 * 1 2 3 31 31 H 1.09003 * 109.47261 * 153.84544 * 1 2 3 32 32 H 0.97004 * 119.99509 * 179.97438 * 6 5 3 33 33 H 1.09009 * 109.45971 * 179.97438 * 11 2 1 34 34 H 1.09008 * 109.49527 * 298.56050 * 12 11 2 35 35 H 1.08994 * 109.50212 * 58.66191 * 12 11 2 36 36 H 1.09001 * 109.59697 * 294.86480 * 13 12 11 37 37 H 1.09006 * 109.70259 * 174.49990 * 13 12 11 38 38 H 1.08996 * 113.58786 * 359.97438 * 19 17 15 39 39 H 1.09002 * 113.58651 * 130.73476 * 19 17 15 40 40 H 1.08003 * 119.81704 * 0.02562 * 21 20 19 41 41 H 1.08007 * 120.03313 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.85171 * 180.02562 * 25 23 22 43 43 H 1.09000 * 109.58247 * 293.81831 * 27 14 13 44 44 H 1.08999 * 109.58236 * 173.39417 * 27 14 13 45 45 H 1.09003 * 109.50038 * 301.33532 * 28 11 2 46 46 H 1.08998 * 109.50192 * 61.43603 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2230 -0.3655 5 6 1.5384 2.3403 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0045 0.1757 8 1 2.4682 4.2382 -1.2847 9 1 1.4891 5.0697 0.7725 10 1 3.6786 4.0285 0.8062 11 6 2.1974 -1.2688 -0.0006 12 6 1.8280 -2.0702 -1.2509 13 6 2.6219 -3.3803 -1.2659 14 7 2.3849 -4.0910 -0.0020 15 6 1.9586 -5.3696 -0.0026 16 8 1.7671 -5.9455 1.0474 17 6 1.7200 -6.0836 -1.3080 18 1 1.1156 -5.5018 -2.0040 19 6 1.2381 -7.5312 -1.1373 20 6 2.5449 -7.9640 -1.7727 21 6 3.3478 -9.0095 -2.1942 22 6 4.5783 -8.7572 -2.7668 23 6 5.0137 -7.4520 -2.9217 24 9 6.2178 -7.2023 -3.4812 25 6 4.2141 -6.4039 -2.5027 26 6 2.9800 -6.6535 -1.9296 27 6 2.6217 -3.3815 1.2627 28 6 1.8281 -2.0712 1.2490 29 1 -0.3633 0.0689 1.0254 30 1 -0.3634 0.8536 -0.5723 31 1 -0.3634 -0.9225 -0.4530 32 1 -0.0291 3.0690 1.4505 33 1 3.2691 -1.0694 -0.0009 34 1 0.7607 -2.2914 -1.2391 35 1 2.0696 -1.4885 -2.1405 36 1 3.6849 -3.1624 -1.3688 37 1 2.2932 -3.9996 -2.1005 38 1 1.1373 -7.8374 -0.0961 39 1 0.3597 -7.7720 -1.7361 40 1 3.0093 -10.0282 -2.0754 41 1 5.2008 -9.5771 -3.0935 42 1 4.5544 -5.3862 -2.6243 43 1 3.6848 -3.1638 1.3659 44 1 2.2907 -4.0006 2.0965 45 1 2.0698 -1.4903 2.1391 46 1 0.7609 -2.2925 1.2372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985598107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:26 Heat of formation + Delta-G solvation = -4.869399 kcal Electronic energy + Delta-G solvation = -28583.472398 eV Core-core repulsion = 24581.917690 eV Total energy + Delta-G solvation = -4001.554708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -49.91860 -42.15950 -40.46204 -38.90020 -36.73947 -35.99272 -33.94818 -32.30367 -31.78131 -31.46270 -28.63205 -28.02339 -26.89172 -25.79034 -24.15902 -23.93759 -23.12261 -21.93456 -20.88110 -19.74903 -18.76317 -18.66065 -18.17263 -17.59800 -17.12192 -16.88024 -16.57861 -16.19555 -16.12944 -15.73189 -15.42678 -15.14792 -15.06063 -14.88540 -14.62105 -14.54713 -14.11121 -13.85295 -13.69785 -13.54347 -13.22135 -13.08808 -12.84459 -12.73242 -12.71699 -12.60343 -12.33930 -12.27608 -12.22658 -12.07888 -11.82706 -11.69861 -11.54594 -11.24864 -10.99464 -10.60257 -9.98267 -9.71241 -9.47711 -8.75131 -7.80582 -5.28781 0.04195 0.18389 1.44456 1.47583 1.49182 1.55684 1.93592 2.51397 2.52746 2.83164 3.20327 3.32663 3.35421 3.49926 3.53985 3.63423 3.88198 3.98070 4.08671 4.16910 4.20755 4.31701 4.32668 4.37711 4.51035 4.55910 4.62912 4.70661 4.78523 4.81005 4.84954 4.92186 4.95055 4.98951 5.05244 5.09781 5.10292 5.20231 5.26047 5.36112 5.49153 5.58361 5.59884 5.67186 5.73937 5.85656 6.34586 6.37350 7.05834 7.17552 7.90606 8.34723 9.22459 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002673 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.329922 B =10473.724231 C =11331.602806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.073 0.927 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.277 1.277 9 H -0.298 1.298 10 H -0.276 1.276 11 C 0.173 3.827 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.601 5.601 15 C 0.528 3.472 16 O -0.576 6.576 17 C -0.063 4.063 18 H 0.150 0.850 19 C -0.049 4.049 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.141 4.141 23 C 0.078 3.922 24 F -0.145 7.145 25 C -0.129 4.129 26 C -0.108 4.108 27 C 0.123 3.877 28 C -0.131 4.131 29 H -0.004 1.004 30 H 0.015 0.985 31 H 0.028 0.972 32 H 0.246 0.754 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -23.501 -10.274 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.391 4.391 4 H 0.091 0.909 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.202 1.202 11 C 0.066 3.934 12 C -0.176 4.176 13 C -0.007 4.007 14 N -0.333 5.333 15 C 0.317 3.683 16 O -0.456 6.456 17 C -0.084 4.084 18 H 0.167 0.833 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.087 4.087 22 C -0.160 4.160 23 C 0.059 3.941 24 F -0.124 7.124 25 C -0.148 4.148 26 C -0.109 4.109 27 C 0.000 4.000 28 C -0.171 4.171 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.157 0.843 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.037 -23.627 -9.691 26.029 hybrid contribution 0.443 1.758 0.271 1.833 sum 5.480 -21.869 -9.419 24.434 Atomic orbital electron populations 1.20409 0.83219 0.95612 0.96968 1.44177 1.01824 1.01324 1.85981 1.19559 0.98507 0.86717 1.34288 0.90906 1.25791 0.98566 1.01873 0.98766 1.70239 1.20011 1.27497 1.41038 0.85336 0.77592 0.79634 0.77837 1.20332 1.22455 1.20217 1.20521 0.95398 0.84747 0.92720 1.22299 1.00310 0.95684 0.99266 1.21929 1.00941 0.92781 0.85038 1.48198 1.65126 1.11750 1.08213 1.20504 0.75666 0.81273 0.90896 1.90659 1.53657 1.66693 1.34631 1.21650 0.94484 0.98503 0.93748 0.83269 1.21851 0.94713 0.89475 1.02541 1.22526 0.98159 0.93961 0.98555 1.20431 0.91982 0.99999 0.96329 1.21321 0.97716 0.95349 1.01577 1.17558 0.82106 0.94497 0.99932 1.91496 1.42614 1.95236 1.83056 1.20346 0.93567 0.99880 1.00988 1.21528 0.93929 0.96820 0.98578 1.21508 0.99983 0.92178 0.86348 1.22278 0.99450 0.95374 1.00007 0.98616 0.96662 0.95409 0.94464 0.92129 0.92340 0.90411 0.89875 0.87267 0.88477 0.85249 0.82452 0.82073 0.84266 0.90395 0.90338 0.92997 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.97 8.03 127.77 1.03 9.99 16 2 N -0.61 -29.46 2.81 -702.63 -1.97 -31.43 16 3 C -0.26 -13.94 9.59 84.03 0.81 -13.13 16 4 H 0.07 3.73 7.82 -2.91 -0.02 3.71 16 5 C -0.06 -3.07 5.12 84.86 0.43 -2.63 16 6 N -0.94 -55.77 10.64 21.65 0.23 -55.54 16 7 Si 0.97 44.70 29.57 68.60 2.03 46.72 16 8 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.17 6.44 2.55 45.02 0.11 6.56 16 12 C -0.14 -3.88 5.32 30.67 0.16 -3.71 16 13 C 0.12 2.46 6.33 86.36 0.55 3.00 16 14 N -0.60 -15.43 2.97 -818.89 -2.43 -17.86 16 15 C 0.53 13.69 7.24 87.66 0.63 14.33 16 16 O -0.58 -19.06 15.12 -3.04 -0.05 -19.10 16 17 C -0.06 -1.13 2.94 -11.83 -0.03 -1.17 16 18 H 0.15 1.92 7.21 -2.38 -0.02 1.91 16 19 C -0.05 -0.75 7.77 30.30 0.24 -0.52 16 20 C -0.13 -2.18 7.49 -19.37 -0.14 -2.32 16 21 C -0.07 -0.94 10.02 22.26 0.22 -0.72 16 22 C -0.14 -2.03 10.02 22.28 0.22 -1.81 16 23 C 0.08 1.44 7.30 22.34 0.16 1.60 16 24 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 25 C -0.13 -2.39 10.01 22.31 0.22 -2.16 16 26 C -0.11 -1.97 6.79 -19.38 -0.13 -2.10 16 27 C 0.12 3.61 6.43 86.36 0.56 4.16 16 28 C -0.13 -4.66 5.34 30.67 0.16 -4.50 16 29 H 0.00 -0.25 7.42 -2.39 -0.02 -0.26 16 30 H 0.01 0.79 7.22 -2.39 -0.02 0.78 16 31 H 0.03 1.16 6.46 -2.39 -0.02 1.14 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.06 2.27 7.86 -2.38 -0.02 2.25 16 34 H 0.06 1.74 6.72 -2.38 -0.02 1.73 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 1.70 5.67 -2.38 -0.01 1.69 16 38 H 0.10 1.85 7.04 -2.39 -0.02 1.83 16 39 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.46 7.01 -2.39 -0.02 2.44 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.74 7.72 -2.39 -0.02 1.72 16 Total: -1.00 -69.31 369.32 4.77 -64.54 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.99 Total: 9.98 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.20 Total: 4.88 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.18 Total: -104.83 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.31 4.77 -64.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985598107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.666 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds