Wall clock time and date at job start Tue Mar 31 2020 16:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 119.99705 * 2 1 4 4 O 1.21273 * 119.99793 * 184.87059 * 3 2 1 5 5 C 1.50706 * 119.99973 * 4.59452 * 3 2 1 6 6 C 1.50698 * 115.54668 * 280.48451 * 5 3 2 7 7 C 1.38246 * 119.97023 * 113.92790 * 6 5 3 8 8 C 1.38204 * 120.02380 * 179.76692 * 7 6 5 9 9 C 1.38457 * 119.97154 * 0.50035 * 8 7 6 10 10 F 1.35102 * 120.02557 * 179.76967 * 9 8 7 11 11 C 1.38454 * 119.94993 * 359.75496 * 9 8 7 12 12 C 1.38204 * 119.97759 * 359.97438 * 11 9 8 13 13 C 1.52999 * 117.49831 * 134.77842 * 5 3 2 14 14 C 1.52997 * 117.49753 * 66.15256 * 5 3 2 15 15 C 1.46490 * 120.00235 * 180.02562 * 2 1 3 16 16 C 1.53779 * 113.61876 * 39.13409 * 15 2 1 17 17 C 1.53951 * 87.02355 * 220.05017 * 16 15 2 18 18 N 1.46502 * 113.53501 * 270.81157 * 17 16 15 19 19 C 1.36938 * 119.99462 * 252.49223 * 18 17 16 20 20 H 1.07994 * 120.00513 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99702 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47011 * 59.99940 * 23 21 19 25 25 H 1.48500 * 109.47047 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47128 * 299.99793 * 23 21 19 27 27 C 1.53781 * 87.11027 * 25.35963 * 17 16 15 28 28 H 1.09000 * 109.47200 * 84.80077 * 1 2 3 29 29 H 1.09005 * 109.46924 * 204.80103 * 1 2 3 30 30 H 1.08996 * 109.47450 * 324.79167 * 1 2 3 31 31 H 1.08001 * 119.99220 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.01407 * 180.25550 * 8 7 6 33 33 H 1.08004 * 120.01585 * 179.97438 * 11 9 8 34 34 H 1.07994 * 119.99161 * 180.02562 * 12 11 9 35 35 H 1.09005 * 117.49701 * 359.97438 * 13 5 3 36 36 H 1.08992 * 117.49956 * 145.01929 * 13 5 3 37 37 H 1.08995 * 117.50210 * 214.97917 * 14 5 3 38 38 H 1.08999 * 117.50079 * 359.97438 * 14 5 3 39 39 H 1.08997 * 112.85061 * 170.33107 * 15 2 1 40 40 H 1.09006 * 113.61039 * 334.56828 * 16 15 2 41 41 H 1.08998 * 113.61454 * 105.46544 * 16 15 2 42 42 H 1.09002 * 113.74392 * 139.94364 * 17 16 15 43 43 H 0.97000 * 120.00519 * 72.49289 * 18 17 16 44 44 H 0.96999 * 119.99671 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.61715 * 220.09001 * 27 17 16 46 46 H 1.09002 * 113.68776 * 89.19979 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3483 1.1692 -0.0892 5 6 1.3889 2.4703 0.1045 6 6 0.7588 2.9618 -1.1731 7 6 -0.6176 3.0297 -1.2828 8 6 -1.1965 3.4848 -2.4523 9 6 -0.3976 3.8631 -3.5180 10 9 -0.9625 4.3038 -4.6634 11 6 0.9807 3.7896 -3.4088 12 6 1.5575 3.3395 -2.2363 13 6 1.9307 3.5213 1.0755 14 6 0.6491 2.7565 1.4128 15 6 2.1975 -1.2686 -0.0006 16 6 1.5592 -2.3483 -0.8903 17 6 1.9075 -3.3557 0.2204 18 7 3.2380 -3.9513 0.0738 19 6 3.3641 -5.2573 -0.3181 20 1 2.4828 -5.8482 -0.5195 21 6 4.6247 -5.8217 -0.4566 22 7 5.6988 -5.1017 -0.2107 23 14 4.7968 -7.6031 -0.9919 24 1 4.1755 -7.7804 -2.3290 25 1 6.2361 -7.9618 -1.0627 26 1 4.1156 -8.4834 -0.0089 27 6 1.8675 -2.1711 1.2001 28 1 -0.3633 0.0931 -1.0234 29 1 -0.3633 -0.9329 0.4311 30 1 -0.3634 0.8396 0.5925 31 1 -1.2407 2.7309 -0.4528 32 1 -2.2717 3.5417 -2.5363 33 1 1.6049 4.0840 -4.2396 34 1 2.6326 3.2825 -2.1508 35 1 2.8293 3.2701 1.6390 36 1 1.8316 4.5685 0.7903 37 1 -0.2932 3.3007 1.3495 38 1 0.7044 2.0023 2.1977 39 1 3.2667 -1.1400 -0.1692 40 1 0.4875 -2.2146 -1.0381 41 1 2.0977 -2.5207 -1.8222 42 1 1.1293 -4.0975 0.4001 43 1 4.0296 -3.4205 0.2543 44 1 6.5796 -5.4963 -0.3071 45 1 2.6547 -2.2006 1.9535 46 1 0.8809 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998867139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:51 Heat of formation + Delta-G solvation = 14.296717 kcal Electronic energy + Delta-G solvation = -28343.746578 eV Core-core repulsion = 24343.022975 eV Total energy + Delta-G solvation = -4000.723603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.17347 -40.87580 -39.32814 -38.11377 -36.40156 -34.75842 -32.90702 -31.49196 -30.53788 -29.79620 -27.08895 -25.62791 -25.11075 -24.02278 -23.66624 -22.98297 -22.34028 -21.49660 -19.15257 -18.27040 -18.05792 -17.51471 -17.12375 -16.51557 -16.31493 -15.92178 -15.81361 -15.12635 -14.90470 -14.73788 -14.59320 -13.95277 -13.89386 -13.64504 -13.55906 -13.08433 -13.00019 -12.76660 -12.63288 -12.35928 -12.18598 -12.02091 -11.97132 -11.80452 -11.53061 -11.44088 -10.95118 -10.85049 -10.81028 -10.62221 -10.25186 -10.19705 -9.83141 -9.68713 -9.59352 -9.44357 -8.91749 -8.80348 -8.40855 -7.01743 -5.79373 -3.09823 0.75019 0.89634 2.58990 2.96562 3.14156 3.43019 3.46403 3.47252 3.48708 3.93576 4.16167 4.33393 4.40783 4.52827 4.55647 4.56676 4.73259 4.93949 5.08168 5.11191 5.12728 5.14881 5.26510 5.28949 5.39158 5.42526 5.51207 5.54842 5.56866 5.66819 5.69720 5.77895 5.80616 5.85969 5.92436 5.98322 6.07369 6.15434 6.21631 6.39837 6.53178 6.56873 6.69878 6.78576 7.01718 7.52906 7.68127 8.24745 8.38672 9.49277 10.05651 10.39672 11.42634 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002612 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.230376 B =10717.354972 C =11341.333050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.593 5.593 3 C 0.550 3.450 4 O -0.531 6.531 5 C -0.119 4.119 6 C -0.052 4.052 7 C -0.081 4.081 8 C -0.153 4.153 9 C 0.097 3.903 10 F -0.141 7.141 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.134 4.134 14 C -0.160 4.160 15 C 0.124 3.876 16 C -0.182 4.182 17 C 0.173 3.827 18 N -0.705 5.705 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.168 4.168 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.070 0.930 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 21.212 0.483 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.324 5.324 3 C 0.337 3.663 4 O -0.407 6.407 5 C -0.122 4.122 6 C -0.052 4.052 7 C -0.099 4.099 8 C -0.172 4.172 9 C 0.078 3.922 10 F -0.119 7.119 11 C -0.169 4.169 12 C -0.090 4.090 13 C -0.171 4.171 14 C -0.197 4.197 15 C 0.021 3.979 16 C -0.224 4.224 17 C 0.060 3.940 18 N -0.344 5.344 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.208 4.208 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.881 20.997 0.340 26.329 hybrid contribution 0.202 -0.680 -0.633 0.950 sum -15.678 20.318 -0.293 25.665 Atomic orbital electron populations 1.21829 0.80105 1.03132 1.01713 1.47865 1.06752 1.05851 1.71949 1.19317 0.87038 0.83701 0.76280 1.90724 1.13877 1.86872 1.49206 1.20007 1.05154 0.96459 0.90563 1.18781 0.92941 1.00032 0.93487 1.20884 0.93876 0.97860 0.97290 1.21101 1.00531 1.02576 0.92949 1.17763 0.91596 0.99996 0.82859 1.91505 1.85466 1.87049 1.47913 1.21167 0.93059 1.03034 0.99627 1.20967 1.00916 0.95725 0.91405 1.23071 0.98101 0.96502 0.99462 1.23184 0.97144 1.03397 0.95961 1.22795 0.97812 0.79509 0.97743 1.24334 0.99478 0.97766 1.00787 1.20932 0.89891 0.91272 0.91921 1.42209 1.00988 1.11093 1.80093 1.19219 0.92338 0.87706 1.38513 0.90988 1.24791 0.95416 0.98354 1.02157 1.69663 0.97229 1.35940 1.54890 0.86240 0.76660 0.84610 0.78482 1.21178 1.21655 1.21187 1.23966 1.01354 0.97745 0.97749 0.92768 0.90482 0.91168 0.84718 0.84528 0.84493 0.84532 0.87518 0.87721 0.87562 0.87708 0.86423 0.91028 0.90972 0.91393 0.77934 0.93291 0.91092 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.45 59.85 0.51 1.24 16 2 N -0.59 -8.18 3.08 -173.01 -0.53 -8.72 16 3 C 0.55 8.06 6.75 -10.98 -0.07 7.99 16 4 O -0.53 -10.08 16.47 5.56 0.09 -9.99 16 5 C -0.12 -1.22 1.04 -156.81 -0.16 -1.39 16 6 C -0.05 -0.50 4.87 -104.62 -0.51 -1.01 16 7 C -0.08 -0.62 8.92 -39.59 -0.35 -0.98 16 8 C -0.15 -1.23 10.03 -39.51 -0.40 -1.62 16 9 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 10 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 11 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 12 C -0.07 -0.75 9.66 -39.59 -0.38 -1.13 16 13 C -0.13 -1.19 9.86 -26.73 -0.26 -1.45 16 14 C -0.16 -1.18 7.55 -26.73 -0.20 -1.38 16 15 C 0.12 2.09 4.10 -67.12 -0.28 1.81 16 16 C -0.18 -3.12 7.31 -25.83 -0.19 -3.31 16 17 C 0.17 3.36 4.57 -67.03 -0.31 3.06 16 18 N -0.71 -17.68 5.31 -52.55 -0.28 -17.96 16 19 C -0.25 -6.82 9.97 -15.06 -0.15 -6.97 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 C -0.17 -2.74 7.34 -25.92 -0.19 -2.93 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.71 6.14 -51.93 -0.32 0.39 16 30 H 0.07 0.52 5.16 -51.93 -0.27 0.25 16 31 H 0.14 0.71 6.79 -52.49 -0.36 0.36 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 0.55 7.16 -51.93 -0.37 0.18 16 38 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 39 H 0.12 2.42 7.20 -51.93 -0.37 2.04 16 40 H 0.07 1.03 6.70 -51.93 -0.35 0.68 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 43 H 0.39 10.43 7.90 -40.82 -0.32 10.11 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.04 6.89 -51.93 -0.36 0.68 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -32.80 380.46 -9.46 -42.27 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.49 Total: 10.00 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.73 Total: -9.66 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.09 Total: -54.23 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.80 -9.46 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998867139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.562 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds