Wall clock time and date at job start Tue Mar 31 2020 16:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 119.99705 * 2 1 4 4 O 1.21273 * 119.99793 * 184.87059 * 3 2 1 5 5 C 1.50706 * 119.99973 * 4.59452 * 3 2 1 6 6 C 1.50698 * 115.54668 * 280.48451 * 5 3 2 7 7 C 1.38246 * 119.97023 * 113.92790 * 6 5 3 8 8 C 1.38204 * 120.02380 * 179.76692 * 7 6 5 9 9 C 1.38457 * 119.97154 * 0.50035 * 8 7 6 10 10 F 1.35102 * 120.02557 * 179.76967 * 9 8 7 11 11 C 1.38454 * 119.94993 * 359.75496 * 9 8 7 12 12 C 1.38204 * 119.97759 * 359.97438 * 11 9 8 13 13 C 1.52999 * 117.49831 * 134.77842 * 5 3 2 14 14 C 1.52997 * 117.49753 * 66.15256 * 5 3 2 15 15 C 1.46490 * 120.00235 * 180.02562 * 2 1 3 16 16 C 1.53779 * 113.61876 * 39.13409 * 15 2 1 17 17 C 1.53951 * 87.02355 * 220.05017 * 16 15 2 18 18 N 1.46502 * 113.53501 * 270.81157 * 17 16 15 19 19 C 1.36938 * 119.99462 * 252.49223 * 18 17 16 20 20 H 1.07994 * 120.00513 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99702 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47011 * 59.99940 * 23 21 19 25 25 H 1.48500 * 109.47047 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47128 * 299.99793 * 23 21 19 27 27 C 1.53781 * 87.11027 * 25.35963 * 17 16 15 28 28 H 1.09000 * 109.47200 * 84.80077 * 1 2 3 29 29 H 1.09005 * 109.46924 * 204.80103 * 1 2 3 30 30 H 1.08996 * 109.47450 * 324.79167 * 1 2 3 31 31 H 1.08001 * 119.99220 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.01407 * 180.25550 * 8 7 6 33 33 H 1.08004 * 120.01585 * 179.97438 * 11 9 8 34 34 H 1.07994 * 119.99161 * 180.02562 * 12 11 9 35 35 H 1.09005 * 117.49701 * 359.97438 * 13 5 3 36 36 H 1.08992 * 117.49956 * 145.01929 * 13 5 3 37 37 H 1.08995 * 117.50210 * 214.97917 * 14 5 3 38 38 H 1.08999 * 117.50079 * 359.97438 * 14 5 3 39 39 H 1.08997 * 112.85061 * 170.33107 * 15 2 1 40 40 H 1.09006 * 113.61039 * 334.56828 * 16 15 2 41 41 H 1.08998 * 113.61454 * 105.46544 * 16 15 2 42 42 H 1.09002 * 113.74392 * 139.94364 * 17 16 15 43 43 H 0.97000 * 120.00519 * 72.49289 * 18 17 16 44 44 H 0.96999 * 119.99671 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.61715 * 220.09001 * 27 17 16 46 46 H 1.09002 * 113.68776 * 89.19979 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3483 1.1692 -0.0892 5 6 1.3889 2.4703 0.1045 6 6 0.7588 2.9618 -1.1731 7 6 -0.6176 3.0297 -1.2828 8 6 -1.1965 3.4848 -2.4523 9 6 -0.3976 3.8631 -3.5180 10 9 -0.9625 4.3038 -4.6634 11 6 0.9807 3.7896 -3.4088 12 6 1.5575 3.3395 -2.2363 13 6 1.9307 3.5213 1.0755 14 6 0.6491 2.7565 1.4128 15 6 2.1975 -1.2686 -0.0006 16 6 1.5592 -2.3483 -0.8903 17 6 1.9075 -3.3557 0.2204 18 7 3.2380 -3.9513 0.0738 19 6 3.3641 -5.2573 -0.3181 20 1 2.4828 -5.8482 -0.5195 21 6 4.6247 -5.8217 -0.4566 22 7 5.6988 -5.1017 -0.2107 23 14 4.7968 -7.6031 -0.9919 24 1 4.1755 -7.7804 -2.3290 25 1 6.2361 -7.9618 -1.0627 26 1 4.1156 -8.4834 -0.0089 27 6 1.8675 -2.1711 1.2001 28 1 -0.3633 0.0931 -1.0234 29 1 -0.3633 -0.9329 0.4311 30 1 -0.3634 0.8396 0.5925 31 1 -1.2407 2.7309 -0.4528 32 1 -2.2717 3.5417 -2.5363 33 1 1.6049 4.0840 -4.2396 34 1 2.6326 3.2825 -2.1508 35 1 2.8293 3.2701 1.6390 36 1 1.8316 4.5685 0.7903 37 1 -0.2932 3.3007 1.3495 38 1 0.7044 2.0023 2.1977 39 1 3.2667 -1.1400 -0.1692 40 1 0.4875 -2.2146 -1.0381 41 1 2.0977 -2.5207 -1.8222 42 1 1.1293 -4.0975 0.4001 43 1 4.0296 -3.4205 0.2543 44 1 6.5796 -5.4963 -0.3071 45 1 2.6547 -2.2006 1.9535 46 1 0.8809 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998867139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:50 Heat of formation + Delta-G solvation = -5.052552 kcal Electronic energy + Delta-G solvation = -28344.585625 eV Core-core repulsion = 24343.022975 eV Total energy + Delta-G solvation = -4001.562650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.91783 -41.85205 -40.38079 -39.28406 -37.27800 -36.19465 -34.69041 -32.15401 -31.77766 -31.20388 -28.01777 -26.93300 -26.49616 -25.62712 -24.40415 -24.13291 -23.01651 -22.57082 -20.19827 -19.69115 -19.32655 -18.79005 -18.16426 -17.63025 -17.20762 -16.77813 -16.68798 -16.60212 -15.97863 -15.89944 -15.61452 -15.47318 -15.03533 -14.58042 -14.36929 -14.32203 -14.27517 -13.99854 -13.47679 -13.36479 -13.33519 -13.23339 -13.12617 -13.01902 -12.74286 -12.53515 -12.40531 -12.21876 -12.12003 -11.85126 -11.74758 -11.58758 -11.44849 -11.14688 -10.91236 -10.73755 -10.10286 -9.58759 -9.55070 -9.05659 -7.96516 -5.27059 0.04081 0.23557 1.46383 1.49956 1.50889 1.56229 1.94795 2.44881 2.54566 2.72654 3.24826 3.35109 3.42768 3.48791 3.66120 3.77531 3.83936 3.85185 3.88179 3.92521 4.01041 4.25938 4.29248 4.31256 4.35124 4.44709 4.62862 4.69998 4.70661 4.76894 4.78944 4.90746 4.91739 4.95224 5.01941 5.05896 5.10426 5.13046 5.18637 5.22603 5.23903 5.32005 5.47590 5.51067 5.70427 5.86574 6.25075 6.44146 7.14122 7.29553 8.05500 8.27164 9.26928 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002612 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.230376 B =10717.354972 C =11341.333050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.590 5.590 3 C 0.541 3.459 4 O -0.591 6.591 5 C -0.129 4.129 6 C -0.055 4.055 7 C -0.069 4.069 8 C -0.144 4.144 9 C 0.081 3.919 10 F -0.148 7.148 11 C -0.159 4.159 12 C -0.093 4.093 13 C -0.144 4.144 14 C -0.127 4.127 15 C 0.126 3.874 16 C -0.162 4.162 17 C 0.154 3.846 18 N -0.725 5.725 19 C -0.244 4.244 20 H 0.084 0.916 21 C -0.080 4.080 22 N -0.974 5.974 23 Si 0.978 3.022 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.273 1.273 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.370 0.630 44 H 0.251 0.749 45 H 0.049 0.951 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.407 21.691 1.426 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C 0.330 3.670 4 O -0.472 6.472 5 C -0.132 4.132 6 C -0.056 4.056 7 C -0.086 4.086 8 C -0.162 4.162 9 C 0.062 3.938 10 F -0.127 7.127 11 C -0.178 4.178 12 C -0.111 4.111 13 C -0.182 4.182 14 C -0.164 4.164 15 C 0.022 3.978 16 C -0.204 4.204 17 C 0.043 3.957 18 N -0.362 5.362 19 C -0.375 4.375 20 H 0.102 0.898 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.199 1.199 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.201 0.799 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.857 21.490 1.284 29.974 hybrid contribution 1.663 -0.748 -0.939 2.051 sum -19.193 20.742 0.345 28.262 Atomic orbital electron populations 1.22205 0.76903 1.05377 1.03139 1.47906 1.08528 1.04344 1.71192 1.20156 0.86646 0.85314 0.74871 1.90695 1.16835 1.87864 1.51790 1.19794 1.06688 0.94348 0.92348 1.18804 0.93914 1.00243 0.92643 1.21199 0.92897 0.96412 0.98100 1.21434 1.01748 1.00952 0.92085 1.17996 0.91679 1.00754 0.83347 1.91486 1.85460 1.87266 1.48488 1.21219 0.93679 1.03304 0.99579 1.20929 1.00298 0.97314 0.92562 1.23133 0.98691 0.97209 0.99129 1.23403 0.97588 1.02283 0.93114 1.22313 0.95783 0.81515 0.98179 1.24155 1.01413 0.96509 0.98306 1.21266 0.87599 0.92616 0.94191 1.42430 1.02740 1.10549 1.80480 1.19696 0.92632 0.88763 1.36453 0.89772 1.25675 0.95284 1.02698 1.03513 1.69851 0.97427 1.37773 1.57345 0.85147 0.76044 0.79723 0.78457 1.20276 1.22549 1.19871 1.23818 1.02989 0.95243 0.96359 0.91910 0.88965 0.88054 0.81028 0.81793 0.84269 0.86596 0.89633 0.86127 0.83799 0.87350 0.91483 0.86875 0.94296 0.90053 0.79874 0.94070 0.93176 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 8.45 127.77 1.08 2.05 16 2 N -0.59 -15.45 3.08 -819.66 -2.53 -17.98 16 3 C 0.54 15.95 6.75 87.66 0.59 16.54 16 4 O -0.59 -24.22 16.47 -3.01 -0.05 -24.27 16 5 C -0.13 -2.42 1.04 -53.67 -0.06 -2.48 16 6 C -0.06 -0.95 4.87 -19.86 -0.10 -1.05 16 7 C -0.07 -0.74 8.92 22.26 0.20 -0.54 16 8 C -0.14 -1.74 10.03 22.31 0.22 -1.52 16 9 C 0.08 1.43 7.30 22.37 0.16 1.59 16 10 F -0.15 -2.90 17.27 44.97 0.78 -2.12 16 11 C -0.16 -3.06 10.03 22.31 0.22 -2.83 16 12 C -0.09 -1.95 9.66 22.26 0.21 -1.73 16 13 C -0.14 -2.37 9.86 30.60 0.30 -2.07 16 14 C -0.13 -1.34 7.55 30.60 0.23 -1.11 16 15 C 0.13 4.30 4.10 45.52 0.19 4.48 16 16 C -0.16 -5.43 7.31 31.18 0.23 -5.20 16 17 C 0.15 5.87 4.57 45.58 0.21 6.07 16 18 N -0.72 -37.37 5.31 -320.17 -1.70 -39.07 16 19 C -0.24 -13.62 9.97 84.03 0.84 -12.79 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 23 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 C -0.14 -4.53 7.34 31.12 0.23 -4.30 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.14 6.14 -2.38 -0.01 1.12 16 30 H 0.10 0.89 5.16 -2.39 -0.01 0.88 16 31 H 0.17 0.57 6.79 -2.91 -0.02 0.55 16 32 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.14 0.50 7.16 -2.39 -0.02 0.48 16 38 H 0.11 1.14 8.11 -2.39 -0.02 1.12 16 39 H 0.07 3.00 7.20 -2.39 -0.02 2.98 16 40 H 0.11 2.83 6.70 -2.38 -0.02 2.81 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 43 H 0.37 21.18 7.90 -92.71 -0.73 20.44 16 44 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.12 2.75 6.89 -2.39 -0.02 2.73 16 Total: -1.00 -78.21 380.46 4.32 -73.89 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.28 Total: 31.38 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.23 Total: -9.07 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -3.94 Total: -118.48 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.21 4.32 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998867139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.841 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds